EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000013525 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 20118 bases
Position: chrLWHD01000219.1:611664-631781
Accession: 108246490
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000018222	RRM_1	PF00076.22	3.6e-13	1	1
ENSKMAP00000018218	RRM_1	PF00076.22	4.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000018470	-	1335	XM_025010060	ENSKMAP00000018218	444 (aa)	XP_024865828	-
ENSKMAT00000018474	-	1227	-	ENSKMAP00000018222	408 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000013525's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000013525's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000013525	-	68	58.033	ENSKMAG00000002798	nono	85	51.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000013525	-	84	53.978	ENSG00000121390	PSPC1	88	55.724	Homo_sapiens
ENSKMAG00000013525	-	98	72.316	ENSAPOG00000015946	pspc1	100	61.597	Acanthochromis_polyacanthus
ENSKMAG00000013525	-	96	51.434	ENSAMEG00000017420	PSPC1	88	55.724	Ailuropoda_melanoleuca
ENSKMAG00000013525	-	100	65.191	ENSACIG00000018695	pspc1	100	65.996	Amphilophus_citrinellus
ENSKMAG00000013525	-	98	72.316	ENSAOCG00000005279	pspc1	100	61.742	Amphiprion_ocellaris
ENSKMAG00000013525	-	98	72.316	ENSAPEG00000015927	pspc1	100	62.095	Amphiprion_percula
ENSKMAG00000013525	-	100	60.000	ENSATEG00000004878	pspc1	100	59.020	Anabas_testudineus
ENSKMAG00000013525	-	71	52.941	ENSAPLG00000006246	PSPC1	100	51.100	Anas_platyrhynchos
ENSKMAG00000013525	-	71	58.599	ENSAPLG00000003643	SFPQ	59	59.539	Anas_platyrhynchos
ENSKMAG00000013525	-	67	69.521	ENSACAG00000002093	PSPC1	89	55.789	Anolis_carolinensis
ENSKMAG00000013525	-	96	50.860	ENSANAG00000000059	PSPC1	88	55.724	Aotus_nancymaae
ENSKMAG00000013525	-	100	65.139	ENSACLG00000027220	pspc1	100	65.737	Astatotilapia_calliptera
ENSKMAG00000013525	-	88	67.463	ENSAMXG00000036881	pspc1	89	57.660	Astyanax_mexicanus
ENSKMAG00000013525	-	96	52.039	ENSBTAG00000003934	PSPC1	89	55.292	Bos_taurus
ENSKMAG00000013525	-	96	50.962	ENSCJAG00000004554	PSPC1	88	55.724	Callithrix_jacchus
ENSKMAG00000013525	-	84	54.409	ENSCAFG00020002009	PSPC1	88	55.724	Canis_lupus_dingo
ENSKMAG00000013525	-	96	52.039	ENSCHIG00000016708	PSPC1	89	55.292	Capra_hircus
ENSKMAG00000013525	-	70	50.513	ENSTSYG00000032882	PSPC1	88	50.513	Carlito_syrichta
ENSKMAG00000013525	-	84	53.978	ENSCPOG00000000395	PSPC1	89	55.292	Cavia_porcellus
ENSKMAG00000013525	-	96	50.860	ENSCCAG00000033498	PSPC1	88	55.724	Cebus_capucinus
ENSKMAG00000013525	-	84	54.194	ENSCATG00000036434	PSPC1	80	69.204	Cercocebus_atys
ENSKMAG00000013525	-	73	51.084	ENSCLAG00000005241	PSPC1	92	52.785	Chinchilla_lanigera
ENSKMAG00000013525	-	66	69.097	ENSCHOG00000008913	PSPC1	88	55.195	Choloepus_hoffmanni
ENSKMAG00000013525	-	99	50.844	ENSCPBG00000020859	PSPC1	88	53.277	Chrysemys_picta_bellii
ENSKMAG00000013525	-	64	51.429	ENSCSAVG00000003533	-	64	48.083	Ciona_savignyi
ENSKMAG00000013525	-	51	69.912	ENSCANG00000018948	PSPC1	75	70.044	Colobus_angolensis_palliatus
ENSKMAG00000013525	-	96	50.382	ENSCGRG00001018368	Pspc1	88	55.508	Cricetulus_griseus_chok1gshd
ENSKMAG00000013525	-	96	50.382	ENSCGRG00000011724	Pspc1	88	55.508	Cricetulus_griseus_crigri
ENSKMAG00000013525	-	98	70.986	ENSCVAG00000007679	-	100	64.272	Cyprinodon_variegatus
ENSKMAG00000013525	-	98	60.615	ENSDARG00000006621	pspc1	100	52.239	Danio_rerio
ENSKMAG00000013525	-	84	54.624	ENSDNOG00000011078	PSPC1	88	55.508	Dasypus_novemcinctus
ENSKMAG00000013525	-	90	51.129	ENSDORG00000016050	Pspc1	88	52.484	Dipodomys_ordii
ENSKMAG00000013525	-	72	37.101	ENSEBUG00000010133	pspc1	76	38.796	Eptatretus_burgeri
ENSKMAG00000013525	-	67	60.137	ENSEBUG00000003964	-	52	61.246	Eptatretus_burgeri
ENSKMAG00000013525	-	84	54.624	ENSEASG00005000119	PSPC1	89	55.508	Equus_asinus_asinus
ENSKMAG00000013525	-	84	54.624	ENSECAG00000017286	PSPC1	89	55.508	Equus_caballus
ENSKMAG00000013525	-	60	57.692	ENSEEUG00000011288	-	51	57.692	Erinaceus_europaeus
ENSKMAG00000013525	-	98	61.667	ENSELUG00000003746	pspc1	87	57.051	Esox_lucius
ENSKMAG00000013525	-	84	54.409	ENSFCAG00000027841	PSPC1	88	55.724	Felis_catus
ENSKMAG00000013525	-	84	54.936	ENSFALG00000008750	PSPC1	88	53.319	Ficedula_albicollis
ENSKMAG00000013525	-	89	53.388	ENSFDAG00000002617	PSPC1	90	55.508	Fukomys_damarensis
ENSKMAG00000013525	-	98	63.215	ENSGMOG00000015074	pspc1	100	55.067	Gadus_morhua
ENSKMAG00000013525	-	84	54.936	ENSGALG00000017142	PSPC1	88	53.319	Gallus_gallus
ENSKMAG00000013525	-	83	71.549	ENSGAFG00000006327	pspc1	73	70.950	Gambusia_affinis
ENSKMAG00000013525	-	99	65.352	ENSGACG00000014901	pspc1	99	57.447	Gasterosteus_aculeatus
ENSKMAG00000013525	-	99	50.844	ENSGAGG00000019164	PSPC1	88	53.277	Gopherus_agassizii
ENSKMAG00000013525	-	84	53.978	ENSGGOG00000003414	PSPC1	88	55.724	Gorilla_gorilla
ENSKMAG00000013525	-	98	75.211	ENSHBUG00000001139	pspc1	100	65.769	Haplochromis_burtoni
ENSKMAG00000013525	-	96	51.638	ENSHGLG00000018811	PSPC1	89	55.508	Heterocephalus_glaber_female
ENSKMAG00000013525	-	71	65.815	ENSHGLG00100007962	PSPC1	88	69.097	Heterocephalus_glaber_male
ENSKMAG00000013525	-	76	69.018	ENSHCOG00000013251	pspc1	79	65.193	Hippocampus_comes
ENSKMAG00000013525	-	100	58.532	ENSIPUG00000013192	pspc1	89	63.409	Ictalurus_punctatus
ENSKMAG00000013525	-	96	50.857	ENSSTOG00000026833	PSPC1	88	55.292	Ictidomys_tridecemlineatus
ENSKMAG00000013525	-	84	54.409	ENSJJAG00000018334	Pspc1	88	55.724	Jaculus_jaculus
ENSKMAG00000013525	-	95	62.203	ENSLBEG00000004474	pspc1	96	61.504	Labrus_bergylta
ENSKMAG00000013525	-	100	49.534	ENSLACG00000010762	PSPC1	88	51.277	Latimeria_chalumnae
ENSKMAG00000013525	-	100	52.897	ENSLOCG00000010832	pspc1	99	52.897	Lepisosteus_oculatus
ENSKMAG00000013525	-	69	67.667	ENSLAFG00000010968	PSPC1	88	55.724	Loxodonta_africana
ENSKMAG00000013525	-	84	54.194	ENSMFAG00000032728	PSPC1	81	69.204	Macaca_fascicularis
ENSKMAG00000013525	-	84	54.194	ENSMMUG00000020262	PSPC1	78	69.204	Macaca_mulatta
ENSKMAG00000013525	-	84	54.194	ENSMNEG00000027401	PSPC1	88	55.940	Macaca_nemestrina
ENSKMAG00000013525	-	70	52.357	ENSMLEG00000039043	PSPC1	94	54.364	Mandrillus_leucophaeus
ENSKMAG00000013525	-	98	70.986	ENSMAMG00000004333	pspc1	100	62.664	Mastacembelus_armatus
ENSKMAG00000013525	-	100	65.139	ENSMZEG00005005726	pspc1	100	65.737	Maylandia_zebra
ENSKMAG00000013525	-	72	52.927	ENSMGAG00000015134	PSPC1	100	51.095	Meleagris_gallopavo
ENSKMAG00000013525	-	91	52.048	ENSMAUG00000021067	Pspc1	86	52.956	Mesocricetus_auratus
ENSKMAG00000013525	-	84	55.724	ENSMICG00000013970	PSPC1	88	55.508	Microcebus_murinus
ENSKMAG00000013525	-	84	52.688	ENSMOCG00000006060	Pspc1	88	55.292	Microtus_ochrogaster
ENSKMAG00000013525	-	72	85.714	ENSMMOG00000004352	pspc1	61	85.714	Mola_mola
ENSKMAG00000013525	-	72	66.026	ENSMODG00000008029	PSPC1	66	56.829	Monodelphis_domestica
ENSKMAG00000013525	-	98	80.328	ENSMALG00000008914	pspc1	100	62.173	Monopterus_albus
ENSKMAG00000013525	-	79	61.671	MGP_CAROLIEiJ_G0019341	Pspc1	84	63.265	Mus_caroli
ENSKMAG00000013525	-	96	49.524	ENSMUSG00000021938	Pspc1	83	63.265	Mus_musculus
ENSKMAG00000013525	-	96	49.714	MGP_PahariEiJ_G0030359	Pspc1	84	63.265	Mus_pahari
ENSKMAG00000013525	-	96	49.524	MGP_SPRETEiJ_G0020232	Pspc1	84	63.265	Mus_spretus
ENSKMAG00000013525	-	84	54.409	ENSMPUG00000013347	PSPC1	88	55.724	Mustela_putorius_furo
ENSKMAG00000013525	-	84	53.648	ENSMLUG00000017663	PSPC1	89	52.331	Myotis_lucifugus
ENSKMAG00000013525	-	91	51.626	ENSNGAG00000011271	Pspc1	88	55.076	Nannospalax_galili
ENSKMAG00000013525	-	77	72.892	ENSNBRG00000014059	pspc1	79	71.084	Neolamprologus_brichardi
ENSKMAG00000013525	-	84	53.978	ENSNLEG00000001294	PSPC1	88	55.724	Nomascus_leucogenys
ENSKMAG00000013525	-	84	52.392	ENSODEG00000007817	-	88	52.847	Octodon_degus
ENSKMAG00000013525	-	84	50.109	ENSODEG00000019012	-	88	52.527	Octodon_degus
ENSKMAG00000013525	-	98	75.493	ENSONIG00000012010	pspc1	99	66.027	Oreochromis_niloticus
ENSKMAG00000013525	-	70	51.861	ENSOANG00000009017	-	100	53.713	Ornithorhynchus_anatinus
ENSKMAG00000013525	-	71	55.700	ENSOANG00000011381	-	92	45.861	Ornithorhynchus_anatinus
ENSKMAG00000013525	-	84	54.526	ENSOCUG00000006153	PSPC1	88	55.844	Oryctolagus_cuniculus
ENSKMAG00000013525	-	98	73.770	ENSORLG00000004232	-	100	66.339	Oryzias_latipes
ENSKMAG00000013525	-	98	75.410	ENSORLG00020000578	PSPC1	100	66.142	Oryzias_latipes_hni
ENSKMAG00000013525	-	98	75.410	ENSORLG00015017480	pspc1	100	66.339	Oryzias_latipes_hsok
ENSKMAG00000013525	-	88	53.527	ENSOGAG00000012643	PSPC1	88	55.724	Otolemur_garnettii
ENSKMAG00000013525	-	84	54.212	ENSOARG00000014163	PSPC1	95	55.315	Ovis_aries
ENSKMAG00000013525	-	84	52.874	ENSPPAG00000009836	PSPC1	97	54.734	Pan_paniscus
ENSKMAG00000013525	-	84	54.409	ENSPPRG00000008833	PSPC1	88	55.724	Panthera_pardus
ENSKMAG00000013525	-	70	52.357	ENSPTIG00000016917	PSPC1	84	53.865	Panthera_tigris_altaica
ENSKMAG00000013525	-	66	69.097	ENSPTRG00000005677	PSPC1	74	69.204	Pan_troglodytes
ENSKMAG00000013525	-	84	54.194	ENSPANG00000001992	PSPC1	79	69.204	Papio_anubis
ENSKMAG00000013525	-	100	52.030	ENSPKIG00000003578	pspc1	89	59.477	Paramormyrops_kingsleyae
ENSKMAG00000013525	-	99	50.094	ENSPSIG00000005168	PSPC1	88	52.248	Pelodiscus_sinensis
ENSKMAG00000013525	-	84	62.983	ENSPMGG00000015135	pspc1	99	61.389	Periophthalmus_magnuspinnatus
ENSKMAG00000013525	-	91	50.810	ENSPEMG00000015214	Pspc1	88	55.292	Peromyscus_maniculatus_bairdii
ENSKMAG00000013525	-	66	37.710	ENSPMAG00000004618	pspc1	82	37.918	Petromyzon_marinus
ENSKMAG00000013525	-	90	52.965	ENSPCIG00000017680	PSPC1	88	55.508	Phascolarctos_cinereus
ENSKMAG00000013525	-	96	75.410	ENSPFOG00000003362	pspc1	99	62.062	Poecilia_formosa
ENSKMAG00000013525	-	98	75.410	ENSPLAG00000011540	pspc1	100	62.308	Poecilia_latipinna
ENSKMAG00000013525	-	98	75.410	ENSPMEG00000008322	pspc1	100	62.308	Poecilia_mexicana
ENSKMAG00000013525	-	98	73.770	ENSPREG00000007786	pspc1	100	61.731	Poecilia_reticulata
ENSKMAG00000013525	-	84	53.548	ENSPPYG00000005186	PSPC1	88	55.292	Pongo_abelii
ENSKMAG00000013525	-	92	54.947	ENSPCOG00000014364	PSPC1	88	57.788	Propithecus_coquereli
ENSKMAG00000013525	-	84	52.916	ENSPVAG00000005036	PSPC1	89	54.428	Pteropus_vampyrus
ENSKMAG00000013525	-	100	65.139	ENSPNYG00000008893	pspc1	100	65.737	Pundamilia_nyererei
ENSKMAG00000013525	-	90	66.372	ENSPNAG00000016511	pspc1	89	59.870	Pygocentrus_nattereri
ENSKMAG00000013525	-	96	50.192	ENSRNOG00000020782	Pspc1	88	55.292	Rattus_norvegicus
ENSKMAG00000013525	-	91	52.236	ENSRBIG00000036057	PSPC1	95	55.724	Rhinopithecus_bieti
ENSKMAG00000013525	-	91	52.236	ENSRROG00000036334	PSPC1	88	55.724	Rhinopithecus_roxellana
ENSKMAG00000013525	-	74	49.741	ENSSBOG00000028172	PSPC1	76	68.670	Saimiri_boliviensis_boliviensis
ENSKMAG00000013525	-	90	49.797	ENSSHAG00000004696	PSPC1	88	51.398	Sarcophilus_harrisii
ENSKMAG00000013525	-	66	73.776	ENSSFOG00015001395	pspc1	99	59.871	Scleropages_formosus
ENSKMAG00000013525	-	98	70.588	ENSSMAG00000001761	pspc1	100	59.699	Scophthalmus_maximus
ENSKMAG00000013525	-	98	72.113	ENSSDUG00000010651	pspc1	100	61.624	Seriola_dumerili
ENSKMAG00000013525	-	100	63.636	ENSSLDG00000004284	pspc1	100	66.053	Seriola_lalandi_dorsalis
ENSKMAG00000013525	-	76	51.756	ENSSARG00000000888	PSPC1	89	48.164	Sorex_araneus
ENSKMAG00000013525	-	87	52.088	ENSSPUG00000008550	PSPC1	88	53.547	Sphenodon_punctatus
ENSKMAG00000013525	-	98	73.521	ENSSPAG00000001921	pspc1	100	62.172	Stegastes_partitus
ENSKMAG00000013525	-	84	54.194	ENSSSCG00000009569	PSPC1	88	55.508	Sus_scrofa
ENSKMAG00000013525	-	84	54.936	ENSTGUG00000011295	PSPC1	99	53.319	Taeniopygia_guttata
ENSKMAG00000013525	-	98	67.188	ENSTRUG00000011335	pspc1	100	58.317	Takifugu_rubripes
ENSKMAG00000013525	-	98	72.131	ENSTNIG00000010358	pspc1	100	57.864	Tetraodon_nigroviridis
ENSKMAG00000013525	-	84	47.046	ENSTBEG00000002361	PSPC1	56	61.806	Tupaia_belangeri
ENSKMAG00000013525	-	96	52.039	ENSTTRG00000003343	PSPC1	89	55.508	Tursiops_truncatus
ENSKMAG00000013525	-	79	62.248	ENSUAMG00000012309	PSPC1	83	69.204	Ursus_americanus
ENSKMAG00000013525	-	92	52.096	ENSUMAG00000013993	PSPC1	95	55.508	Ursus_maritimus
ENSKMAG00000013525	-	70	52.357	ENSVPAG00000010029	PSPC1	100	53.616	Vicugna_pacos
ENSKMAG00000013525	-	84	54.409	ENSVVUG00000006414	PSPC1	75	69.204	Vulpes_vulpes
ENSKMAG00000013525	-	83	71.549	ENSXCOG00000017438	pspc1	84	71.229	Xiphophorus_couchianus
ENSKMAG00000013525	-	83	72.113	ENSXMAG00000007929	pspc1	84	71.788	Xiphophorus_maculatus