EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSKMAG00000013597 (Gene tree)
Gene ID
108236706
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
polyadenylate-binding protein 4
Gene Type
protein_coding
Species
Kryptolebias_marmoratus
Status
putative
Strand
Minus strand
Length
9091 bases
Position
chrLWHD01000002.1:783628-792718
Accession
108236706
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSKMAP00000018306PABPPF00658.185.4e-3111
ENSKMAP00000018282PABPPF00658.185.9e-3111
ENSKMAP00000018306RRM_5PF13893.62e-0811
ENSKMAP00000018282RRM_5PF13893.62.5e-0811
ENSKMAP00000018306RRM_1PF00076.221.1e-9014
ENSKMAP00000018306RRM_1PF00076.221.1e-9024
ENSKMAP00000018306RRM_1PF00076.221.1e-9034
ENSKMAP00000018306RRM_1PF00076.221.1e-9044
ENSKMAP00000018282RRM_1PF00076.221.4e-9014
ENSKMAP00000018282RRM_1PF00076.221.4e-9024
ENSKMAP00000018282RRM_1PF00076.221.4e-9034
ENSKMAP00000018282RRM_1PF00076.221.4e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSKMAT00000018535-3246XM_017417572ENSKMAP00000018282627 (aa)XP_017273061UPI0007F928E8
ENSKMAT00000018559-1809-ENSKMAP00000018306602 (aa)--
Gene Model
Click here to download ENSKMAG00000013597's gene model file
Pathways
Pathway IDPathway NameSource
kmr03013RNA transportKEGG
kmr03015mRNA surveillance pathwayKEGG
kmr03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000013597's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSKMAG00000013597pabpc46032.450ENSKMAG00000006259-9632.450
ENSKMAG00000013597pabpc46234.940ENSKMAG00000022289elavl48134.940
ENSKMAG00000013597pabpc49978.477ENSKMAG00000008049pabpc1b9978.691
ENSKMAG00000013597pabpc45137.500ENSKMAG00000003744celf5a5737.500
ENSKMAG00000013597pabpc46938.889ENSKMAG00000016811rbm39b5237.349
ENSKMAG00000013597pabpc46236.145ENSKMAG00000006299ELAVL28536.145
ENSKMAG00000013597pabpc49976.378ENSKMAG00000000605pabpc1a9975.906
ENSKMAG00000013597pabpc46036.111ENSKMAG00000014566-6736.111
ENSKMAG00000013597pabpc49767.255ENSKMAG00000016847pabpc1l9966.667
ENSKMAG00000013597pabpc46331.522ENSKMAG00000008111ncl5033.714
ENSKMAG00000013597pabpc45531.447ENSKMAG00000001230trnau1apa5631.056
ENSKMAG00000013597pabpc45933.333ENSKMAG00000014807rbm197333.333
ENSKMAG00000013597pabpc45338.636ENSKMAG00000014795-5838.636
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSKMAG00000013597pabpc49985.072ENSG00000090621PABPC49996.396Homo_sapiens
ENSKMAG00000013597pabpc49995.477ENSAPOG00000001161pabpc49994.737Acanthochromis_polyacanthus
ENSKMAG00000013597pabpc49849.753ENSAMEG00000015083-9949.010Ailuropoda_melanoleuca
ENSKMAG00000013597pabpc49979.518ENSAMEG00000011535-9990.847Ailuropoda_melanoleuca
ENSKMAG00000013597pabpc410094.471ENSACIG00000023343pabpc410094.471Amphilophus_citrinellus
ENSKMAG00000013597pabpc49995.800ENSAOCG00000021529pabpc49995.056Amphiprion_ocellaris
ENSKMAG00000013597pabpc49995.800ENSAPEG00000019196pabpc49995.056Amphiprion_percula
ENSKMAG00000013597pabpc49995.484ENSATEG00000007402pabpc49994.904Anabas_testudineus
ENSKMAG00000013597pabpc49984.929ENSAPLG00000009729-10084.748Anas_platyrhynchos
ENSKMAG00000013597pabpc49884.425ENSACAG00000002544PABPC410083.717Anolis_carolinensis
ENSKMAG00000013597pabpc49982.188ENSANAG00000025079PABPC49982.677Aotus_nancymaae
ENSKMAG00000013597pabpc410095.382ENSACLG00000019558pabpc410095.382Astatotilapia_calliptera
ENSKMAG00000013597pabpc49985.127ENSAMXG00000018779pabpc49985.127Astyanax_mexicanus
ENSKMAG00000013597pabpc49981.202ENSBTAG00000017125PABPC49981.077Bos_taurus
ENSKMAG00000013597pabpc46084.431ENSBTAG00000048536-9384.431Bos_taurus
ENSKMAG00000013597pabpc47681.308ENSCJAG00000045953-8579.556Callithrix_jacchus
ENSKMAG00000013597pabpc49982.188ENSCJAG00000002512-9982.677Callithrix_jacchus
ENSKMAG00000013597pabpc49982.188ENSCAFG00000003081PABPC49982.677Canis_familiaris
ENSKMAG00000013597pabpc49979.669ENSCAFG00020004161PABPC49991.076Canis_lupus_dingo
ENSKMAG00000013597pabpc49965.576ENSCHIG00000023385-9965.109Capra_hircus
ENSKMAG00000013597pabpc49979.518ENSCHIG00000019398-9979.248Capra_hircus
ENSKMAG00000013597pabpc49983.307ENSTSYG00000006532PABPC49982.677Carlito_syrichta
ENSKMAG00000013597pabpc49983.333ENSCAPG00000015984PABPC49991.244Cavia_aperea
ENSKMAG00000013597pabpc49983.172ENSCPOG00000009552PABPC49991.304Cavia_porcellus
ENSKMAG00000013597pabpc49982.344ENSCCAG00000037306PABPC49982.835Cebus_capucinus
ENSKMAG00000013597pabpc49982.188ENSCATG00000042164PABPC49982.677Cercocebus_atys
ENSKMAG00000013597pabpc49982.344ENSCLAG00000011899PABPC49991.076Chinchilla_lanigera
ENSKMAG00000013597pabpc49979.669ENSCSAG00000001135PABPC49979.398Chlorocebus_sabaeus
ENSKMAG00000013597pabpc48989.211ENSCHOG00000005327PABPC47989.757Choloepus_hoffmanni
ENSKMAG00000013597pabpc49986.164ENSCPBG00000001038PABPC410085.535Chrysemys_picta_bellii
ENSKMAG00000013597pabpc49882.409ENSCANG00000034177PABPC49982.907Colobus_angolensis_palliatus
ENSKMAG00000013597pabpc49884.903ENSCGRG00001018166Pabpc49990.618Cricetulus_griseus_chok1gshd
ENSKMAG00000013597pabpc49785.173ENSCGRG00000009777Pabpc49983.522Cricetulus_griseus_crigri
ENSKMAG00000013597pabpc410094.586ENSCSEG00000000130pabpc410094.586Cynoglossus_semilaevis
ENSKMAG00000013597pabpc49995.469ENSCVAG00000019246pabpc410095.469Cyprinodon_variegatus
ENSKMAG00000013597pabpc49891.720ENSDARG00000059259pabpc410091.584Danio_rerio
ENSKMAG00000013597pabpc49881.019ENSDNOG00000018444-9981.560Dasypus_novemcinctus
ENSKMAG00000013597pabpc49981.510ENSDORG00000011581Pabpc49981.327Dipodomys_ordii
ENSKMAG00000013597pabpc49990.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSKMAG00000013597pabpc48554.360ENSETEG00000009172-9952.244Echinops_telfairi
ENSKMAG00000013597pabpc49776.661ENSEBUG00000013782pabpc49976.349Eptatretus_burgeri
ENSKMAG00000013597pabpc49977.722ENSEBUG00000000992pabpc410077.722Eptatretus_burgeri
ENSKMAG00000013597pabpc49979.669ENSEASG00005014119PABPC49979.398Equus_asinus_asinus
ENSKMAG00000013597pabpc49979.669ENSECAG00000009396PABPC49979.398Equus_caballus
ENSKMAG00000013597pabpc49778.254ENSEEUG00000002962PABPC49977.744Erinaceus_europaeus
ENSKMAG00000013597pabpc49891.256ENSELUG00000003195pabpc49990.610Esox_lucius
ENSKMAG00000013597pabpc49982.188ENSFCAG00000015254-9991.076Felis_catus
ENSKMAG00000013597pabpc49985.714ENSFALG00000000543PABPC410085.086Ficedula_albicollis
ENSKMAG00000013597pabpc48951.688ENSFDAG00000010581-9948.810Fukomys_damarensis
ENSKMAG00000013597pabpc49979.819ENSFDAG00000020016-9991.076Fukomys_damarensis
ENSKMAG00000013597pabpc410095.694ENSFHEG00000007548pabpc410095.694Fundulus_heteroclitus
ENSKMAG00000013597pabpc410090.252ENSGMOG00000019025pabpc49990.252Gadus_morhua
ENSKMAG00000013597pabpc49985.849ENSGALG00000003800PABPC410085.220Gallus_gallus
ENSKMAG00000013597pabpc410094.127ENSGAFG00000018195pabpc410098.086Gambusia_affinis
ENSKMAG00000013597pabpc410092.504ENSGACG00000007179pabpc49992.504Gasterosteus_aculeatus
ENSKMAG00000013597pabpc49986.321ENSGAGG00000001888PABPC410085.692Gopherus_agassizii
ENSKMAG00000013597pabpc49982.188ENSGGOG00000004002PABPC49982.677Gorilla_gorilla
ENSKMAG00000013597pabpc410095.223ENSHBUG00000020206pabpc410095.223Haplochromis_burtoni
ENSKMAG00000013597pabpc49982.344ENSHGLG00000011162PABPC49991.076Heterocephalus_glaber_female
ENSKMAG00000013597pabpc49982.344ENSHGLG00100001580PABPC49982.835Heterocephalus_glaber_male
ENSKMAG00000013597pabpc410093.142ENSHCOG00000012694pabpc49993.301Hippocampus_comes
ENSKMAG00000013597pabpc49790.982ENSIPUG00000016620pabpc410090.581Ictalurus_punctatus
ENSKMAG00000013597pabpc49984.912ENSSTOG00000010416PABPC49984.270Ictidomys_tridecemlineatus
ENSKMAG00000013597pabpc49980.093ENSJJAG00000007781Pabpc49979.815Jaculus_jaculus
ENSKMAG00000013597pabpc49995.048ENSLBEG00000013654pabpc49995.048Labrus_bergylta
ENSKMAG00000013597pabpc49985.938ENSLACG00000011907PABPC410085.400Latimeria_chalumnae
ENSKMAG00000013597pabpc49989.905ENSLOCG00000001877pabpc49989.905Lepisosteus_oculatus
ENSKMAG00000013597pabpc49985.072ENSLAFG00000000151PABPC49991.076Loxodonta_africana
ENSKMAG00000013597pabpc49982.188ENSMFAG00000041481PABPC49982.677Macaca_fascicularis
ENSKMAG00000013597pabpc49979.669ENSMMUG00000007497PABPC49979.398Macaca_mulatta
ENSKMAG00000013597pabpc49982.188ENSMNEG00000043054PABPC49982.520Macaca_nemestrina
ENSKMAG00000013597pabpc49982.188ENSMLEG00000040716PABPC49982.677Mandrillus_leucophaeus
ENSKMAG00000013597pabpc49996.284ENSMAMG00000010025pabpc410096.019Mastacembelus_armatus
ENSKMAG00000013597pabpc410095.223ENSMZEG00005006141pabpc410095.223Maylandia_zebra
ENSKMAG00000013597pabpc49882.293ENSMGAG00000005408PABPC410081.956Meleagris_gallopavo
ENSKMAG00000013597pabpc46080.117ENSMAUG00000004089-9280.117Mesocricetus_auratus
ENSKMAG00000013597pabpc47676.389ENSMAUG00000001295-9778.199Mesocricetus_auratus
ENSKMAG00000013597pabpc48088.889ENSMAUG00000019763-8484.259Mesocricetus_auratus
ENSKMAG00000013597pabpc49877.358ENSMICG00000036729-9975.706Microcebus_murinus
ENSKMAG00000013597pabpc48884.685ENSMICG00000016633-10084.173Microcebus_murinus
ENSKMAG00000013597pabpc49983.710ENSMOCG00000006763Pabpc410091.076Microtus_ochrogaster
ENSKMAG00000013597pabpc410093.811ENSMMOG00000002363pabpc410093.811Mola_mola
ENSKMAG00000013597pabpc46271.467ENSMODG00000018051-9671.467Monodelphis_domestica
ENSKMAG00000013597pabpc49782.769ENSMODG00000017657-10081.269Monodelphis_domestica
ENSKMAG00000013597pabpc49995.330ENSMALG00000011017pabpc49994.754Monopterus_albus
ENSKMAG00000013597pabpc49873.310MGP_CAROLIEiJ_G0024864-9973.084Mus_caroli
ENSKMAG00000013597pabpc49979.367MGP_CAROLIEiJ_G0026435-10096.454Mus_caroli
ENSKMAG00000013597pabpc49984.751ENSMUSG00000011257Pabpc410094.643Mus_musculus
ENSKMAG00000013597pabpc49979.697MGP_PahariEiJ_G0028765Pabpc410097.163Mus_pahari
ENSKMAG00000013597pabpc49870.844MGP_SPRETEiJ_G0027415Pabpc410097.163Mus_spretus
ENSKMAG00000013597pabpc49546.318ENSMPUG00000006836-10045.738Mustela_putorius_furo
ENSKMAG00000013597pabpc49979.669ENSMPUG00000014414-9991.076Mustela_putorius_furo
ENSKMAG00000013597pabpc49985.233ENSMLUG00000012068PABPC49984.591Myotis_lucifugus
ENSKMAG00000013597pabpc49985.072ENSNGAG00000018292Pabpc49984.430Nannospalax_galili
ENSKMAG00000013597pabpc46298.558ENSNBRG00000009708pabpc49898.558Neolamprologus_brichardi
ENSKMAG00000013597pabpc46896.988ENSNBRG00000010047-7296.988Neolamprologus_brichardi
ENSKMAG00000013597pabpc49982.188ENSNLEG00000011928PABPC49982.677Nomascus_leucogenys
ENSKMAG00000013597pabpc48793.651ENSOPRG00000011984PABPC48693.651Ochotona_princeps
ENSKMAG00000013597pabpc45582.857ENSODEG00000013457-10082.857Octodon_degus
ENSKMAG00000013597pabpc49874.059ENSODEG00000017434-9973.431Octodon_degus
ENSKMAG00000013597pabpc49982.512ENSODEG00000006592-9982.362Octodon_degus
ENSKMAG00000013597pabpc410095.541ENSONIG00000008176pabpc410095.541Oreochromis_niloticus
ENSKMAG00000013597pabpc49985.063ENSOANG00000010001PABPC410084.434Ornithorhynchus_anatinus
ENSKMAG00000013597pabpc49579.937ENSOCUG00000000562PABPC48879.656Oryctolagus_cuniculus
ENSKMAG00000013597pabpc49997.531ENSORLG00000017479pabpc49997.531Oryzias_latipes
ENSKMAG00000013597pabpc49997.531ENSORLG00020018644pabpc49997.531Oryzias_latipes_hni
ENSKMAG00000013597pabpc49997.531ENSORLG00015015042pabpc49997.531Oryzias_latipes_hsok
ENSKMAG00000013597pabpc410094.737ENSOMEG00000014410pabpc49994.737Oryzias_melastigma
ENSKMAG00000013597pabpc49981.106ENSOGAG00000004067PABPC48991.076Otolemur_garnettii
ENSKMAG00000013597pabpc49979.518ENSOARG00000020060PABPC49979.248Ovis_aries
ENSKMAG00000013597pabpc49982.188ENSPPAG00000043625PABPC49982.677Pan_paniscus
ENSKMAG00000013597pabpc49982.188ENSPPRG00000024727PABPC49991.076Panthera_pardus
ENSKMAG00000013597pabpc49982.188ENSPTIG00000005829PABPC49991.076Panthera_tigris_altaica
ENSKMAG00000013597pabpc49982.188ENSPTRG00000000573PABPC49982.677Pan_troglodytes
ENSKMAG00000013597pabpc49982.188ENSPANG00000009484PABPC49991.076Papio_anubis
ENSKMAG00000013597pabpc49990.407ENSPKIG00000025356pabpc49989.780Paramormyrops_kingsleyae
ENSKMAG00000013597pabpc49986.478ENSPSIG00000016892PABPC410085.849Pelodiscus_sinensis
ENSKMAG00000013597pabpc410094.020ENSPMGG00000009073pabpc49994.850Periophthalmus_magnuspinnatus
ENSKMAG00000013597pabpc49982.215ENSPEMG00000023569-9990.618Peromyscus_maniculatus_bairdii
ENSKMAG00000013597pabpc49979.535ENSPEMG00000024193-9979.782Peromyscus_maniculatus_bairdii
ENSKMAG00000013597pabpc49673.795ENSPMAG00000007885pabpc49973.251Petromyzon_marinus
ENSKMAG00000013597pabpc48875.610ENSPMAG00000002836pabpc410075.610Petromyzon_marinus
ENSKMAG00000013597pabpc49786.538ENSPCIG00000020674PABPC410095.388Phascolarctos_cinereus
ENSKMAG00000013597pabpc410095.056ENSPFOG00000002682pabpc410095.056Poecilia_formosa
ENSKMAG00000013597pabpc410095.056ENSPLAG00000010112pabpc410095.056Poecilia_latipinna
ENSKMAG00000013597pabpc410095.056ENSPMEG00000019739pabpc410095.056Poecilia_mexicana
ENSKMAG00000013597pabpc410095.056ENSPREG00000001589pabpc410095.056Poecilia_reticulata
ENSKMAG00000013597pabpc49979.669ENSPPYG00000001506PABPC49979.398Pongo_abelii
ENSKMAG00000013597pabpc49974.849ENSPCAG00000003341PABPC49983.753Procavia_capensis
ENSKMAG00000013597pabpc49982.059ENSPCOG00000023725-9982.547Propithecus_coquereli
ENSKMAG00000013597pabpc49868.198ENSPCOG00000025882-9969.444Propithecus_coquereli
ENSKMAG00000013597pabpc49878.833ENSPVAG00000002187PABPC49991.129Pteropus_vampyrus
ENSKMAG00000013597pabpc410095.382ENSPNYG00000006134pabpc410095.382Pundamilia_nyererei
ENSKMAG00000013597pabpc410092.101ENSPNAG00000024355pabpc410092.101Pygocentrus_nattereri
ENSKMAG00000013597pabpc49981.356ENSRNOG00000015642Pabpc49981.173Rattus_norvegicus
ENSKMAG00000013597pabpc49979.199ENSRNOG00000028592AABR07035074.19979.012Rattus_norvegicus
ENSKMAG00000013597pabpc49982.188ENSRBIG00000039761PABPC49982.677Rhinopithecus_bieti
ENSKMAG00000013597pabpc49982.188ENSRROG00000033355PABPC49982.677Rhinopithecus_roxellana
ENSKMAG00000013597pabpc49982.344ENSSBOG00000026193PABPC49991.076Saimiri_boliviensis_boliviensis
ENSKMAG00000013597pabpc49786.538ENSSHAG00000018139PABPC410084.906Sarcophilus_harrisii
ENSKMAG00000013597pabpc49989.886ENSSFOG00015023514pabpc410089.886Scleropages_formosus
ENSKMAG00000013597pabpc410095.223ENSSMAG00000009007pabpc410095.223Scophthalmus_maximus
ENSKMAG00000013597pabpc49995.800ENSSDUG00000012683pabpc49995.215Seriola_dumerili
ENSKMAG00000013597pabpc49995.800ENSSLDG00000013025pabpc49995.215Seriola_lalandi_dorsalis
ENSKMAG00000013597pabpc49973.343ENSSARG00000000310PABPC49973.233Sorex_araneus
ENSKMAG00000013597pabpc49986.825ENSSPUG00000003204PABPC410086.190Sphenodon_punctatus
ENSKMAG00000013597pabpc410095.056ENSSPAG00000009252pabpc49995.056Stegastes_partitus
ENSKMAG00000013597pabpc48945.115ENSSSCG00000036170-9645.208Sus_scrofa
ENSKMAG00000013597pabpc49982.188ENSSSCG00000003660-9991.076Sus_scrofa
ENSKMAG00000013597pabpc49980.781ENSTGUG00000001266PABPC410081.381Taeniopygia_guttata
ENSKMAG00000013597pabpc410093.949ENSTRUG00000005907pabpc410093.949Takifugu_rubripes
ENSKMAG00000013597pabpc49988.283ENSTNIG00000016902pabpc49988.122Tetraodon_nigroviridis
ENSKMAG00000013597pabpc49868.781ENSTBEG00000009035PABPC49968.500Tupaia_belangeri
ENSKMAG00000013597pabpc49859.011ENSTTRG00000014340PABPC49967.667Tursiops_truncatus
ENSKMAG00000013597pabpc49982.188ENSUAMG00000000303PABPC49991.076Ursus_americanus
ENSKMAG00000013597pabpc49987.330ENSUMAG00000019585PABPC49991.566Ursus_maritimus
ENSKMAG00000013597pabpc47470.501ENSVPAG00000010041PABPC47370.501Vicugna_pacos
ENSKMAG00000013597pabpc49982.188ENSVVUG00000005215PABPC49991.076Vulpes_vulpes
ENSKMAG00000013597pabpc49881.905ENSXETG00000010946pabpc49981.270Xenopus_tropicalis
ENSKMAG00000013597pabpc47096.429ENSXETG00000027221-10096.429Xenopus_tropicalis
ENSKMAG00000013597pabpc49992.185ENSXCOG00000013190pabpc49696.226Xiphophorus_couchianus
ENSKMAG00000013597pabpc410095.056ENSXMAG00000019007pabpc410095.056Xiphophorus_maculatus

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