EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000014115 (Gene tree)
Gene ID: 108247655
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 18295 bases
Position: chrLWHD01000285.1:204849-223143
Accession: 108247655
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000019028	MMR_HSR1	PF01926.23	1.5e-08	1	1
ENSKMAP00000018995	MMR_HSR1	PF01926.23	1.6e-08	1	1
ENSKMAP00000019012	MMR_HSR1	PF01926.23	1.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000019274	-	1521	XM_017435962	ENSKMAP00000019012	485 (aa)	XP_017291451	-
ENSKMAT00000019291	-	1362	-	ENSKMAP00000019028	453 (aa)	-	-
ENSKMAT00000019256	-	1557	XM_017435961	ENSKMAP00000018995	497 (aa)	XP_017291450	-

Gene Model

Click here to download ENSKMAG00000014115's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000014115's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000014115	srl	52	40.336	ENSKMAG00000003332	-	56	37.134
ENSKMAG00000014115	srl	88	33.083	ENSKMAG00000004764	ehd1a	72	33.083
ENSKMAG00000014115	srl	92	33.095	ENSKMAG00000012447	ehd2b	76	33.095
ENSKMAG00000014115	srl	98	74.017	ENSKMAG00000019537	SRL	96	80.482
ENSKMAG00000014115	srl	87	34.177	ENSKMAG00000018498	ehd3	71	34.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000014115	srl	93	84.561	ENSG00000185739	SRL	98	84.561	Homo_sapiens
ENSKMAG00000014115	srl	95	95.011	ENSAPOG00000018093	srl	98	95.011	Acanthochromis_polyacanthus
ENSKMAG00000014115	srl	93	78.622	ENSAPOG00000012432	SRL	96	78.972	Acanthochromis_polyacanthus
ENSKMAG00000014115	srl	93	85.036	ENSAMEG00000010862	SRL	51	81.696	Ailuropoda_melanoleuca
ENSKMAG00000014115	srl	93	97.150	ENSACIG00000015799	srl	98	95.909	Amphilophus_citrinellus
ENSKMAG00000014115	srl	93	78.385	ENSACIG00000015419	SRL	98	78.111	Amphilophus_citrinellus
ENSKMAG00000014115	srl	93	96.675	ENSAOCG00000007574	srl	98	96.226	Amphiprion_ocellaris
ENSKMAG00000014115	srl	93	78.910	ENSAOCG00000017049	SRL	98	76.615	Amphiprion_ocellaris
ENSKMAG00000014115	srl	93	75.059	ENSAPEG00000006533	SRL	98	73.274	Amphiprion_percula
ENSKMAG00000014115	srl	95	95.349	ENSAPEG00000006911	srl	98	95.349	Amphiprion_percula
ENSKMAG00000014115	srl	93	77.419	ENSATEG00000009643	SRL	52	76.444	Anabas_testudineus
ENSKMAG00000014115	srl	95	94.926	ENSATEG00000024315	srl	98	94.926	Anabas_testudineus
ENSKMAG00000014115	srl	95	80.962	ENSACAG00000016380	SRL	88	80.962	Anolis_carolinensis
ENSKMAG00000014115	srl	95	94.503	ENSACLG00000027685	srl	98	94.503	Astatotilapia_calliptera
ENSKMAG00000014115	srl	97	74.066	ENSACLG00000024674	SRL	53	79.481	Astatotilapia_calliptera
ENSKMAG00000014115	srl	93	93.112	ENSAMXG00000018789	srl	90	89.831	Astyanax_mexicanus
ENSKMAG00000014115	srl	88	79.449	ENSAMXG00000038693	SRL	93	77.619	Astyanax_mexicanus
ENSKMAG00000014115	srl	93	85.714	ENSBTAG00000001078	SRL	56	83.258	Bos_taurus
ENSKMAG00000014115	srl	93	84.561	ENSCJAG00000019750	SRL	98	79.654	Callithrix_jacchus
ENSKMAG00000014115	srl	93	85.036	ENSCAFG00000019233	SRL	83	81.573	Canis_familiaris
ENSKMAG00000014115	srl	93	85.036	ENSCAFG00020025024	SRL	52	85.036	Canis_lupus_dingo
ENSKMAG00000014115	srl	93	85.714	ENSCHIG00000017927	SRL	55	83.258	Capra_hircus
ENSKMAG00000014115	srl	93	85.036	ENSTSYG00000007919	SRL	98	85.036	Carlito_syrichta
ENSKMAG00000014115	srl	93	85.273	ENSCPOG00000012643	SRL	98	80.952	Cavia_porcellus
ENSKMAG00000014115	srl	87	84.343	ENSCCAG00000032646	SRL	100	85.224	Cebus_capucinus
ENSKMAG00000014115	srl	93	84.561	ENSCATG00000032227	-	98	79.654	Cercocebus_atys
ENSKMAG00000014115	srl	93	85.986	ENSCLAG00000016242	SRL	98	81.385	Chinchilla_lanigera
ENSKMAG00000014115	srl	85	86.753	ENSCHOG00000001618	SRL	52	86.753	Choloepus_hoffmanni
ENSKMAG00000014115	srl	93	86.788	ENSCPBG00000026371	SRL	96	82.189	Chrysemys_picta_bellii
ENSKMAG00000014115	srl	91	58.499	ENSCING00000005231	-	98	58.499	Ciona_intestinalis
ENSKMAG00000014115	srl	93	84.561	ENSCANG00000035872	SRL	98	84.561	Colobus_angolensis_palliatus
ENSKMAG00000014115	srl	93	85.748	ENSCGRG00001016630	Srl	98	80.952	Cricetulus_griseus_chok1gshd
ENSKMAG00000014115	srl	93	85.748	ENSCGRG00000005458	Srl	98	80.952	Cricetulus_griseus_crigri
ENSKMAG00000014115	srl	93	76.540	ENSCSEG00000011866	SRL	91	74.009	Cynoglossus_semilaevis
ENSKMAG00000014115	srl	95	94.565	ENSCSEG00000016151	srl	98	94.565	Cynoglossus_semilaevis
ENSKMAG00000014115	srl	95	95.339	ENSCVAG00000003513	srl	98	95.339	Cyprinodon_variegatus
ENSKMAG00000014115	srl	98	74.781	ENSCVAG00000022465	SRL	59	77.232	Cyprinodon_variegatus
ENSKMAG00000014115	srl	84	79.167	ENSDARG00000112959	CABZ01072309.1	100	79.167	Danio_rerio
ENSKMAG00000014115	srl	93	93.587	ENSDARG00000104587	srl	98	90.698	Danio_rerio
ENSKMAG00000014115	srl	93	84.798	ENSDNOG00000011643	SRL	50	84.798	Dasypus_novemcinctus
ENSKMAG00000014115	srl	93	85.273	ENSDORG00000014807	Srl	98	81.169	Dipodomys_ordii
ENSKMAG00000014115	srl	82	66.133	ENSEBUG00000015937	srl	94	66.310	Eptatretus_burgeri
ENSKMAG00000014115	srl	93	85.238	ENSEASG00005000942	SRL	51	85.238	Equus_asinus_asinus
ENSKMAG00000014115	srl	94	84.309	ENSECAG00000024219	SRL	98	80.562	Equus_caballus
ENSKMAG00000014115	srl	94	90.588	ENSELUG00000015616	srl	98	86.373	Esox_lucius
ENSKMAG00000014115	srl	93	84.798	ENSFCAG00000022075	SRL	98	80.346	Felis_catus
ENSKMAG00000014115	srl	92	86.124	ENSFALG00000004328	SRL	63	83.220	Ficedula_albicollis
ENSKMAG00000014115	srl	93	85.748	ENSFDAG00000006199	SRL	98	81.385	Fukomys_damarensis
ENSKMAG00000014115	srl	98	75.391	ENSFHEG00000011854	SRL	97	77.880	Fundulus_heteroclitus
ENSKMAG00000014115	srl	95	95.339	ENSFHEG00000011239	srl	98	95.339	Fundulus_heteroclitus
ENSKMAG00000014115	srl	93	90.741	ENSGMOG00000014954	srl	98	91.441	Gadus_morhua
ENSKMAG00000014115	srl	93	86.429	ENSGALG00000038884	SRL	96	82.599	Gallus_gallus
ENSKMAG00000014115	srl	95	95.551	ENSGAFG00000000010	srl	98	95.551	Gambusia_affinis
ENSKMAG00000014115	srl	99	76.000	ENSGAFG00000016984	SRL	98	78.753	Gambusia_affinis
ENSKMAG00000014115	srl	93	93.056	ENSGACG00000011332	srl	98	95.067	Gasterosteus_aculeatus
ENSKMAG00000014115	srl	93	84.561	ENSGGOG00000011312	-	98	79.654	Gorilla_gorilla
ENSKMAG00000014115	srl	97	74.286	ENSHBUG00000015710	SRL	53	79.577	Haplochromis_burtoni
ENSKMAG00000014115	srl	95	94.503	ENSHBUG00000007581	srl	98	94.503	Haplochromis_burtoni
ENSKMAG00000014115	srl	93	85.511	ENSHGLG00000015271	SRL	98	80.952	Heterocephalus_glaber_female
ENSKMAG00000014115	srl	93	85.511	ENSHGLG00100019378	SRL	98	80.952	Heterocephalus_glaber_male
ENSKMAG00000014115	srl	93	96.912	ENSHCOG00000008687	srl	97	96.119	Hippocampus_comes
ENSKMAG00000014115	srl	93	92.399	ENSIPUG00000012513	srl	98	89.641	Ictalurus_punctatus
ENSKMAG00000014115	srl	96	69.037	ENSIPUG00000011609	SRL	92	71.667	Ictalurus_punctatus
ENSKMAG00000014115	srl	93	85.273	ENSSTOG00000021151	-	98	80.911	Ictidomys_tridecemlineatus
ENSKMAG00000014115	srl	93	85.511	ENSJJAG00000016400	Srl	98	81.818	Jaculus_jaculus
ENSKMAG00000014115	srl	98	75.000	ENSLBEG00000013811	SRL	96	75.225	Labrus_bergylta
ENSKMAG00000014115	srl	93	95.724	ENSLBEG00000026643	srl	98	93.709	Labrus_bergylta
ENSKMAG00000014115	srl	93	86.461	ENSLACG00000002825	SRL	98	84.127	Latimeria_chalumnae
ENSKMAG00000014115	srl	93	91.211	ENSLOCG00000002644	srl	97	86.652	Lepisosteus_oculatus
ENSKMAG00000014115	srl	93	84.561	ENSLAFG00000006329	SRL	51	81.069	Loxodonta_africana
ENSKMAG00000014115	srl	93	84.561	ENSMFAG00000037383	SRL	98	84.561	Macaca_fascicularis
ENSKMAG00000014115	srl	93	84.561	ENSMNEG00000019236	-	95	80.984	Macaca_nemestrina
ENSKMAG00000014115	srl	86	84.278	ENSMLEG00000032156	SRL	88	84.278	Mandrillus_leucophaeus
ENSKMAG00000014115	srl	93	96.200	ENSMAMG00000023322	srl	97	92.341	Mastacembelus_armatus
ENSKMAG00000014115	srl	98	73.626	ENSMAMG00000013756	SRL	52	75.847	Mastacembelus_armatus
ENSKMAG00000014115	srl	95	94.503	ENSMZEG00005004548	srl	98	94.503	Maylandia_zebra
ENSKMAG00000014115	srl	97	74.066	ENSMZEG00005004010	SRL	54	79.343	Maylandia_zebra
ENSKMAG00000014115	srl	93	86.429	ENSMGAG00000009342	SRL	96	85.488	Meleagris_gallopavo
ENSKMAG00000014115	srl	93	85.273	ENSMICG00000032307	SRL	98	79.914	Microcebus_murinus
ENSKMAG00000014115	srl	93	85.036	ENSMOCG00000008208	Srl	98	80.477	Microtus_ochrogaster
ENSKMAG00000014115	srl	93	95.249	ENSMMOG00000013970	srl	98	94.091	Mola_mola
ENSKMAG00000014115	srl	92	76.389	ENSMMOG00000021572	SRL	97	74.664	Mola_mola
ENSKMAG00000014115	srl	93	86.190	ENSMODG00000016380	-	50	83.900	Monodelphis_domestica
ENSKMAG00000014115	srl	95	94.565	ENSMALG00000005039	srl	98	94.565	Monopterus_albus
ENSKMAG00000014115	srl	92	77.804	ENSMALG00000000670	SRL	98	77.804	Monopterus_albus
ENSKMAG00000014115	srl	93	85.986	MGP_CAROLIEiJ_G0020400	Srl	98	82.468	Mus_caroli
ENSKMAG00000014115	srl	93	85.986	ENSMUSG00000022519	Srl	98	82.468	Mus_musculus
ENSKMAG00000014115	srl	93	85.986	MGP_SPRETEiJ_G0021294	Srl	98	82.468	Mus_spretus
ENSKMAG00000014115	srl	93	85.036	ENSMPUG00000015025	SRL	54	82.353	Mustela_putorius_furo
ENSKMAG00000014115	srl	93	85.511	ENSMLUG00000030733	SRL	56	83.258	Myotis_lucifugus
ENSKMAG00000014115	srl	93	85.748	ENSNGAG00000019741	Srl	98	81.602	Nannospalax_galili
ENSKMAG00000014115	srl	93	96.200	ENSNBRG00000023775	srl	98	94.143	Neolamprologus_brichardi
ENSKMAG00000014115	srl	97	74.229	ENSNBRG00000002422	SRL	56	76.443	Neolamprologus_brichardi
ENSKMAG00000014115	srl	86	85.825	ENSNLEG00000029051	SRL	88	85.825	Nomascus_leucogenys
ENSKMAG00000014115	srl	85	86.269	ENSOPRG00000000477	-	52	76.923	Ochotona_princeps
ENSKMAG00000014115	srl	93	85.986	ENSODEG00000013256	SRL	98	81.169	Octodon_degus
ENSKMAG00000014115	srl	95	94.503	ENSONIG00000005192	srl	98	94.503	Oreochromis_niloticus
ENSKMAG00000014115	srl	95	94.492	ENSORLG00000008291	srl	95	94.492	Oryzias_latipes
ENSKMAG00000014115	srl	92	78.043	ENSORLG00000015064	SRL	95	77.494	Oryzias_latipes
ENSKMAG00000014115	srl	95	94.915	ENSORLG00020019784	srl	84	94.915	Oryzias_latipes_hni
ENSKMAG00000014115	srl	92	78.282	ENSORLG00020018173	SRL	95	77.726	Oryzias_latipes_hni
ENSKMAG00000014115	srl	92	78.282	ENSORLG00015019063	SRL	96	77.598	Oryzias_latipes_hsok
ENSKMAG00000014115	srl	95	94.492	ENSORLG00015009342	srl	95	94.492	Oryzias_latipes_hsok
ENSKMAG00000014115	srl	93	97.150	ENSOMEG00000010006	srl	98	94.915	Oryzias_melastigma
ENSKMAG00000014115	srl	92	76.798	ENSOMEG00000005682	SRL	53	73.789	Oryzias_melastigma
ENSKMAG00000014115	srl	93	85.036	ENSOGAG00000029266	SRL	54	82.353	Otolemur_garnettii
ENSKMAG00000014115	srl	93	85.714	ENSOARG00000003074	SRL	53	85.714	Ovis_aries
ENSKMAG00000014115	srl	93	84.561	ENSPPAG00000024919	-	98	84.561	Pan_paniscus
ENSKMAG00000014115	srl	93	84.798	ENSPPRG00000010274	SRL	98	84.798	Panthera_pardus
ENSKMAG00000014115	srl	93	84.798	ENSPTIG00000015162	SRL	98	84.798	Panthera_tigris_altaica
ENSKMAG00000014115	srl	93	84.561	ENSPTRG00000007712	SRL	98	84.561	Pan_troglodytes
ENSKMAG00000014115	srl	93	84.561	ENSPANG00000013804	SRL	96	81.208	Papio_anubis
ENSKMAG00000014115	srl	93	92.874	ENSPKIG00000006405	srl	98	89.263	Paramormyrops_kingsleyae
ENSKMAG00000014115	srl	93	81.948	ENSPKIG00000024974	SRL	92	78.043	Paramormyrops_kingsleyae
ENSKMAG00000014115	srl	98	81.982	ENSPSIG00000008586	SRL	50	81.982	Pelodiscus_sinensis
ENSKMAG00000014115	srl	93	76.485	ENSPMGG00000023505	-	96	77.938	Periophthalmus_magnuspinnatus
ENSKMAG00000014115	srl	93	95.249	ENSPMGG00000021081	srl	95	93.213	Periophthalmus_magnuspinnatus
ENSKMAG00000014115	srl	93	85.511	ENSPEMG00000015842	Srl	98	80.952	Peromyscus_maniculatus_bairdii
ENSKMAG00000014115	srl	93	67.890	ENSPMAG00000004786	srl	99	67.890	Petromyzon_marinus
ENSKMAG00000014115	srl	93	86.429	ENSPCIG00000012128	SRL	96	83.900	Phascolarctos_cinereus
ENSKMAG00000014115	srl	95	95.763	ENSPFOG00000011408	srl	96	93.590	Poecilia_formosa
ENSKMAG00000014115	srl	99	74.889	ENSPLAG00000002932	SRL	98	77.701	Poecilia_latipinna
ENSKMAG00000014115	srl	93	96.675	ENSPLAG00000008017	srl	98	94.235	Poecilia_latipinna
ENSKMAG00000014115	srl	95	95.652	ENSPMEG00000006745	srl	98	94.235	Poecilia_mexicana
ENSKMAG00000014115	srl	100	72.805	ENSPMEG00000005890	SRL	56	78.788	Poecilia_mexicana
ENSKMAG00000014115	srl	95	95.763	ENSPREG00000007751	srl	98	95.918	Poecilia_reticulata
ENSKMAG00000014115	srl	98	75.839	ENSPREG00000000315	SRL	98	78.391	Poecilia_reticulata
ENSKMAG00000014115	srl	94	84.198	ENSPPYG00000007053	SRL	99	84.198	Pongo_abelii
ENSKMAG00000014115	srl	93	84.524	ENSPCAG00000003378	-	50	82.127	Procavia_capensis
ENSKMAG00000014115	srl	93	85.036	ENSPCOG00000023135	SRL	98	85.036	Propithecus_coquereli
ENSKMAG00000014115	srl	93	84.798	ENSPVAG00000006586	SRL	52	84.798	Pteropus_vampyrus
ENSKMAG00000014115	srl	97	74.066	ENSPNYG00000003423	SRL	53	79.343	Pundamilia_nyererei
ENSKMAG00000014115	srl	95	94.503	ENSPNYG00000001200	srl	98	94.503	Pundamilia_nyererei
ENSKMAG00000014115	srl	93	91.924	ENSPNAG00000023106	srl	98	88.771	Pygocentrus_nattereri
ENSKMAG00000014115	srl	93	77.435	ENSPNAG00000007361	-	92	75.281	Pygocentrus_nattereri
ENSKMAG00000014115	srl	93	86.223	ENSRNOG00000005269	Srl	50	82.589	Rattus_norvegicus
ENSKMAG00000014115	srl	93	84.561	ENSRBIG00000042358	SRL	50	81.208	Rhinopithecus_bieti
ENSKMAG00000014115	srl	93	84.561	ENSSBOG00000029273	SRL	98	79.654	Saimiri_boliviensis_boliviensis
ENSKMAG00000014115	srl	93	85.952	ENSSHAG00000011715	-	50	82.960	Sarcophilus_harrisii
ENSKMAG00000014115	srl	93	93.349	ENSSFOG00015009773	srl	98	90.295	Scleropages_formosus
ENSKMAG00000014115	srl	95	93.492	ENSSMAG00000016274	srl	98	93.492	Scophthalmus_maximus
ENSKMAG00000014115	srl	98	73.742	ENSSMAG00000002232	SRL	50	73.742	Scophthalmus_maximus
ENSKMAG00000014115	srl	93	78.271	ENSSDUG00000009161	SRL	96	78.802	Seriola_dumerili
ENSKMAG00000014115	srl	93	97.387	ENSSDUG00000010808	srl	96	96.774	Seriola_dumerili
ENSKMAG00000014115	srl	93	77.982	ENSSLDG00000014601	SRL	95	80.046	Seriola_lalandi_dorsalis
ENSKMAG00000014115	srl	95	95.551	ENSSLDG00000022024	srl	98	95.551	Seriola_lalandi_dorsalis
ENSKMAG00000014115	srl	92	85.919	ENSSPUG00000016859	SRL	97	83.484	Sphenodon_punctatus
ENSKMAG00000014115	srl	95	94.726	ENSSPAG00000019105	srl	98	94.726	Stegastes_partitus
ENSKMAG00000014115	srl	98	76.749	ENSSPAG00000014254	SRL	96	80.047	Stegastes_partitus
ENSKMAG00000014115	srl	93	85.714	ENSSSCG00000007949	SRL	97	83.641	Sus_scrofa
ENSKMAG00000014115	srl	92	86.364	ENSTGUG00000003951	-	97	83.447	Taeniopygia_guttata
ENSKMAG00000014115	srl	80	87.017	ENSTGUG00000016121	-	100	87.017	Taeniopygia_guttata
ENSKMAG00000014115	srl	95	94.565	ENSTRUG00000006005	srl	98	94.565	Takifugu_rubripes
ENSKMAG00000014115	srl	94	78.066	ENSTRUG00000013310	SRL	55	78.066	Takifugu_rubripes
ENSKMAG00000014115	srl	93	96.437	ENSTNIG00000009739	srl	98	93.913	Tetraodon_nigroviridis
ENSKMAG00000014115	srl	93	85.036	ENSUAMG00000005701	SRL	55	82.579	Ursus_americanus
ENSKMAG00000014115	srl	93	85.036	ENSUMAG00000002574	SRL	55	82.579	Ursus_maritimus
ENSKMAG00000014115	srl	93	83.373	ENSXETG00000017313	srl	97	80.909	Xenopus_tropicalis
ENSKMAG00000014115	srl	94	95.128	ENSXCOG00000010424	srl	99	95.128	Xiphophorus_couchianus
ENSKMAG00000014115	srl	99	75.778	ENSXCOG00000014584	SRL	98	78.211	Xiphophorus_couchianus
ENSKMAG00000014115	srl	100	73.019	ENSXMAG00000027598	SRL	62	75.492	Xiphophorus_maculatus
ENSKMAG00000014115	srl	95	95.551	ENSXMAG00000004625	srl	93	95.551	Xiphophorus_maculatus