EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000014305 (Gene tree)
Gene ID: 108242956
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 7598 bases
Position: chrLWHD01000004.1:589423-597020
Accession: 108242956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000019251	RNA_pol_A_bac	PF01000.26	1.8e-30	1	1
ENSKMAP00000019267	RNA_pol_A_bac	PF01000.26	1.1e-27	1	1
ENSKMAP00000019267	RNA_pol_L	PF01193.24	1.7e-23	1	1
ENSKMAP00000019251	RNA_pol_L	PF01193.24	2.4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000019530	-	891	-	ENSKMAP00000019267	296 (aa)	-	-
ENSKMAT00000019514	-	2283	XM_017428126	ENSKMAP00000019251	361 (aa)	XP_017283615	UPI0007F8A433

Gene Model

Click here to download ENSKMAG00000014305's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03020	RNA polymerase	KEGG
kmr04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000014305's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000014305	polr1c	99	72.203	ENSG00000171453	POLR1C	100	75.000	Homo_sapiens
ENSKMAG00000014305	polr1c	97	85.470	ENSAPOG00000024356	polr1c	100	85.470	Acanthochromis_polyacanthus
ENSKMAG00000014305	polr1c	98	71.955	ENSAMEG00000012205	POLR1C	100	71.388	Ailuropoda_melanoleuca
ENSKMAG00000014305	polr1c	92	78.248	ENSACIG00000016268	polr1c	91	78.248	Amphilophus_citrinellus
ENSKMAG00000014305	polr1c	98	85.028	ENSAOCG00000011687	polr1c	98	85.028	Amphiprion_ocellaris
ENSKMAG00000014305	polr1c	97	86.040	ENSAPEG00000002433	polr1c	100	86.040	Amphiprion_percula
ENSKMAG00000014305	polr1c	97	89.971	ENSATEG00000005985	polr1c	99	89.971	Anabas_testudineus
ENSKMAG00000014305	polr1c	84	70.724	ENSAPLG00000002908	POLR1C	100	70.066	Anas_platyrhynchos
ENSKMAG00000014305	polr1c	88	73.101	ENSACAG00000009764	POLR1C	89	72.785	Anolis_carolinensis
ENSKMAG00000014305	polr1c	99	72.542	ENSANAG00000025805	POLR1C	99	72.542	Aotus_nancymaae
ENSKMAG00000014305	polr1c	58	30.769	ENSACLG00000004854	polr2c	78	31.000	Astatotilapia_calliptera
ENSKMAG00000014305	polr1c	100	87.542	ENSACLG00000006573	polr1c	100	88.319	Astatotilapia_calliptera
ENSKMAG00000014305	polr1c	100	79.461	ENSAMXG00000012062	polr1c	100	79.461	Astyanax_mexicanus
ENSKMAG00000014305	polr1c	97	72.365	ENSBTAG00000018969	POLR1C	100	72.080	Bos_taurus
ENSKMAG00000014305	polr1c	89	45.401	WBGene00019275	rpac-40	92	44.214	Caenorhabditis_elegans
ENSKMAG00000014305	polr1c	79	30.970	WBGene00007971	rpb-3	92	30.970	Caenorhabditis_elegans
ENSKMAG00000014305	polr1c	100	72.054	ENSCJAG00000005594	POLR1C	100	72.054	Callithrix_jacchus
ENSKMAG00000014305	polr1c	97	72.080	ENSCAFG00000001872	POLR1C	100	71.225	Canis_familiaris
ENSKMAG00000014305	polr1c	97	72.080	ENSCAFG00020012018	POLR1C	100	71.225	Canis_lupus_dingo
ENSKMAG00000014305	polr1c	58	31.319	ENSCAFG00020007660	POLR2C	50	31.319	Canis_lupus_dingo
ENSKMAG00000014305	polr1c	97	72.080	ENSCHIG00000004352	POLR1C	100	72.080	Capra_hircus
ENSKMAG00000014305	polr1c	100	72.054	ENSTSYG00000011921	POLR1C	100	72.054	Carlito_syrichta
ENSKMAG00000014305	polr1c	84	73.267	ENSCAPG00000015364	POLR1C	88	72.607	Cavia_aperea
ENSKMAG00000014305	polr1c	97	73.066	ENSCPOG00000038098	POLR1C	99	72.493	Cavia_porcellus
ENSKMAG00000014305	polr1c	100	72.391	ENSCCAG00000020169	POLR1C	100	72.391	Cebus_capucinus
ENSKMAG00000014305	polr1c	99	72.203	ENSCATG00000044045	POLR1C	99	72.203	Cercocebus_atys
ENSKMAG00000014305	polr1c	97	73.789	ENSCLAG00000009266	POLR1C	100	73.219	Chinchilla_lanigera
ENSKMAG00000014305	polr1c	58	31.868	ENSCLAG00000013676	POLR2C	52	30.415	Chinchilla_lanigera
ENSKMAG00000014305	polr1c	97	71.633	ENSCSAG00000011913	POLR1C	99	71.633	Chlorocebus_sabaeus
ENSKMAG00000014305	polr1c	59	68.868	ENSCHOG00000006601	POLR1C	100	68.868	Choloepus_hoffmanni
ENSKMAG00000014305	polr1c	97	74.785	ENSCPBG00000025203	POLR1C	99	74.212	Chrysemys_picta_bellii
ENSKMAG00000014305	polr1c	96	53.314	ENSCING00000003563	-	99	53.314	Ciona_intestinalis
ENSKMAG00000014305	polr1c	99	72.203	ENSCANG00000043167	POLR1C	99	72.203	Colobus_angolensis_palliatus
ENSKMAG00000014305	polr1c	97	71.510	ENSCGRG00001017533	Polr1c	100	70.940	Cricetulus_griseus_chok1gshd
ENSKMAG00000014305	polr1c	84	71.617	ENSCGRG00000013225	Polr1c	100	70.957	Cricetulus_griseus_crigri
ENSKMAG00000014305	polr1c	97	84.900	ENSCSEG00000018097	polr1c	100	84.900	Cynoglossus_semilaevis
ENSKMAG00000014305	polr1c	58	30.769	ENSCVAG00000017931	polr2c	74	30.500	Cyprinodon_variegatus
ENSKMAG00000014305	polr1c	59	90.094	ENSCVAG00000005684	polr1c	85	90.094	Cyprinodon_variegatus
ENSKMAG00000014305	polr1c	98	79.261	ENSDARG00000039400	polr1c	96	78.977	Danio_rerio
ENSKMAG00000014305	polr1c	97	72.365	ENSDNOG00000042693	POLR1C	100	71.795	Dasypus_novemcinctus
ENSKMAG00000014305	polr1c	97	72.650	ENSDORG00000000429	Polr1c	100	72.080	Dipodomys_ordii
ENSKMAG00000014305	polr1c	88	51.104	FBgn0031657	CG3756	93	50.158	Drosophila_melanogaster
ENSKMAG00000014305	polr1c	95	68.895	ENSETEG00000010807	POLR1C	98	68.605	Echinops_telfairi
ENSKMAG00000014305	polr1c	97	66.667	ENSEBUG00000013725	polr1c	99	66.097	Eptatretus_burgeri
ENSKMAG00000014305	polr1c	97	71.795	ENSEASG00005003338	POLR1C	100	71.225	Equus_asinus_asinus
ENSKMAG00000014305	polr1c	100	71.717	ENSECAG00000023516	POLR1C	100	71.717	Equus_caballus
ENSKMAG00000014305	polr1c	97	72.779	ENSEEUG00000005471	POLR1C	99	72.206	Erinaceus_europaeus
ENSKMAG00000014305	polr1c	100	79.798	ENSELUG00000013027	polr1c	100	79.798	Esox_lucius
ENSKMAG00000014305	polr1c	100	72.054	ENSFCAG00000009735	POLR1C	100	72.054	Felis_catus
ENSKMAG00000014305	polr1c	91	70.948	ENSFALG00000012111	POLR1C	100	70.336	Ficedula_albicollis
ENSKMAG00000014305	polr1c	97	73.219	ENSFDAG00000008428	POLR1C	100	72.650	Fukomys_damarensis
ENSKMAG00000014305	polr1c	100	92.568	ENSFHEG00000000262	polr1c	100	92.568	Fundulus_heteroclitus
ENSKMAG00000014305	polr1c	58	89.205	ENSFHEG00000013867	-	85	92.571	Fundulus_heteroclitus
ENSKMAG00000014305	polr1c	91	78.659	ENSGMOG00000013878	polr1c	100	78.354	Gadus_morhua
ENSKMAG00000014305	polr1c	97	72.080	ENSGALG00000010349	POLR1C	100	71.510	Gallus_gallus
ENSKMAG00000014305	polr1c	97	91.453	ENSGAFG00000010153	polr1c	100	91.453	Gambusia_affinis
ENSKMAG00000014305	polr1c	97	84.900	ENSGACG00000002453	polr1c	100	84.900	Gasterosteus_aculeatus
ENSKMAG00000014305	polr1c	97	73.639	ENSGAGG00000010640	POLR1C	99	73.066	Gopherus_agassizii
ENSKMAG00000014305	polr1c	99	72.203	ENSGGOG00000010903	POLR1C	99	72.203	Gorilla_gorilla
ENSKMAG00000014305	polr1c	58	30.769	ENSHBUG00000023040	polr2c	78	31.000	Haplochromis_burtoni
ENSKMAG00000014305	polr1c	97	78.348	ENSHBUG00000017816	polr1c	100	77.493	Haplochromis_burtoni
ENSKMAG00000014305	polr1c	97	72.934	ENSHGLG00000019441	POLR1C	100	72.365	Heterocephalus_glaber_female
ENSKMAG00000014305	polr1c	97	73.219	ENSHGLG00100005970	POLR1C	100	72.650	Heterocephalus_glaber_male
ENSKMAG00000014305	polr1c	97	80.802	ENSHCOG00000002179	polr1c	99	80.802	Hippocampus_comes
ENSKMAG00000014305	polr1c	97	79.943	ENSIPUG00000024464	polr1c	99	79.370	Ictalurus_punctatus
ENSKMAG00000014305	polr1c	58	31.868	ENSSTOG00000015150	-	50	30.415	Ictidomys_tridecemlineatus
ENSKMAG00000014305	polr1c	97	72.365	ENSSTOG00000010631	POLR1C	100	71.795	Ictidomys_tridecemlineatus
ENSKMAG00000014305	polr1c	97	72.365	ENSJJAG00000023110	Polr1c	100	71.795	Jaculus_jaculus
ENSKMAG00000014305	polr1c	97	86.895	ENSLBEG00000014925	polr1c	100	86.895	Labrus_bergylta
ENSKMAG00000014305	polr1c	94	55.864	ENSLACG00000012567	POLR1C	98	57.143	Latimeria_chalumnae
ENSKMAG00000014305	polr1c	98	78.125	ENSLOCG00000016710	polr1c	96	77.904	Lepisosteus_oculatus
ENSKMAG00000014305	polr1c	84	72.131	ENSLAFG00000026248	POLR1C	100	71.803	Loxodonta_africana
ENSKMAG00000014305	polr1c	58	31.868	ENSLAFG00000027230	POLR2C	74	30.415	Loxodonta_africana
ENSKMAG00000014305	polr1c	99	71.864	ENSMFAG00000046295	POLR1C	99	71.864	Macaca_fascicularis
ENSKMAG00000014305	polr1c	99	71.864	ENSMMUG00000015192	POLR1C	99	71.864	Macaca_mulatta
ENSKMAG00000014305	polr1c	99	71.864	ENSMNEG00000028073	POLR1C	99	71.864	Macaca_nemestrina
ENSKMAG00000014305	polr1c	99	71.864	ENSMLEG00000034818	POLR1C	99	71.864	Mandrillus_leucophaeus
ENSKMAG00000014305	polr1c	100	88.552	ENSMAMG00000008700	polr1c	100	89.174	Mastacembelus_armatus
ENSKMAG00000014305	polr1c	100	87.205	ENSMZEG00005018545	polr1c	100	88.034	Maylandia_zebra
ENSKMAG00000014305	polr1c	82	67.797	ENSMGAG00000011020	POLR1C	100	67.119	Meleagris_gallopavo
ENSKMAG00000014305	polr1c	97	71.510	ENSMAUG00000014329	Polr1c	100	70.940	Mesocricetus_auratus
ENSKMAG00000014305	polr1c	100	71.044	ENSMICG00000005027	POLR1C	100	71.044	Microcebus_murinus
ENSKMAG00000014305	polr1c	58	30.698	ENSMOCG00000013652	Polr2c	73	30.698	Microtus_ochrogaster
ENSKMAG00000014305	polr1c	97	72.365	ENSMOCG00000017549	Polr1c	100	71.795	Microtus_ochrogaster
ENSKMAG00000014305	polr1c	100	83.446	ENSMMOG00000005380	polr1c	100	83.446	Mola_mola
ENSKMAG00000014305	polr1c	82	73.220	ENSMODG00000018964	POLR1C	100	72.881	Monodelphis_domestica
ENSKMAG00000014305	polr1c	100	87.542	ENSMALG00000011711	polr1c	100	87.542	Monopterus_albus
ENSKMAG00000014305	polr1c	97	63.248	MGP_CAROLIEiJ_G0021662	Polr1c	100	69.318	Mus_caroli
ENSKMAG00000014305	polr1c	97	72.080	ENSMUSG00000067148	Polr1c	99	76.699	Mus_musculus
ENSKMAG00000014305	polr1c	97	72.650	MGP_PahariEiJ_G0020654	Polr1c	99	77.670	Mus_pahari
ENSKMAG00000014305	polr1c	97	72.080	MGP_SPRETEiJ_G0022574	Polr1c	99	76.699	Mus_spretus
ENSKMAG00000014305	polr1c	98	72.521	ENSMPUG00000012916	POLR1C	92	71.955	Mustela_putorius_furo
ENSKMAG00000014305	polr1c	98	72.443	ENSMLUG00000017751	POLR1C	100	71.875	Myotis_lucifugus
ENSKMAG00000014305	polr1c	97	72.080	ENSNGAG00000023487	Polr1c	100	71.510	Nannospalax_galili
ENSKMAG00000014305	polr1c	100	87.838	ENSNBRG00000018742	polr1c	100	88.034	Neolamprologus_brichardi
ENSKMAG00000014305	polr1c	97	72.206	ENSNLEG00000004035	POLR1C	99	71.633	Nomascus_leucogenys
ENSKMAG00000014305	polr1c	99	63.478	ENSMEUG00000006778	POLR1C	99	63.478	Notamacropus_eugenii
ENSKMAG00000014305	polr1c	82	68.033	ENSOPRG00000000145	POLR1C	100	71.429	Ochotona_princeps
ENSKMAG00000014305	polr1c	61	68.950	ENSODEG00000017109	-	97	70.283	Octodon_degus
ENSKMAG00000014305	polr1c	97	73.066	ENSODEG00000015831	-	99	72.493	Octodon_degus
ENSKMAG00000014305	polr1c	98	88.636	ENSONIG00000013133	polr1c	99	88.636	Oreochromis_niloticus
ENSKMAG00000014305	polr1c	97	70.201	ENSOANG00000003043	POLR1C	99	69.628	Ornithorhynchus_anatinus
ENSKMAG00000014305	polr1c	98	71.875	ENSOCUG00000005504	POLR1C	100	71.023	Oryctolagus_cuniculus
ENSKMAG00000014305	polr1c	97	85.185	ENSORLG00000019743	polr1c	100	85.185	Oryzias_latipes
ENSKMAG00000014305	polr1c	74	67.518	ENSORLG00020005555	polr1c	81	67.029	Oryzias_latipes_hni
ENSKMAG00000014305	polr1c	97	85.755	ENSORLG00020006489	POLR1C	100	85.755	Oryzias_latipes_hni
ENSKMAG00000014305	polr1c	97	84.900	ENSORLG00015013322	polr1c	100	84.900	Oryzias_latipes_hsok
ENSKMAG00000014305	polr1c	96	86.667	ENSOMEG00000016527	polr1c	98	86.667	Oryzias_melastigma
ENSKMAG00000014305	polr1c	97	71.510	ENSOGAG00000016318	POLR1C	100	71.225	Otolemur_garnettii
ENSKMAG00000014305	polr1c	97	72.080	ENSOARG00000007503	POLR1C	100	71.795	Ovis_aries
ENSKMAG00000014305	polr1c	99	72.203	ENSPPAG00000043678	POLR1C	99	72.203	Pan_paniscus
ENSKMAG00000014305	polr1c	100	72.391	ENSPPRG00000009760	POLR1C	100	72.391	Panthera_pardus
ENSKMAG00000014305	polr1c	100	72.391	ENSPTIG00000014813	POLR1C	100	72.391	Panthera_tigris_altaica
ENSKMAG00000014305	polr1c	99	72.203	ENSPTRG00000018202	POLR1C	99	72.203	Pan_troglodytes
ENSKMAG00000014305	polr1c	99	72.203	ENSPANG00000009025	POLR1C	99	72.203	Papio_anubis
ENSKMAG00000014305	polr1c	100	77.441	ENSPKIG00000009858	polr1c	100	77.441	Paramormyrops_kingsleyae
ENSKMAG00000014305	polr1c	99	73.259	ENSPSIG00000012580	POLR1C	95	72.599	Pelodiscus_sinensis
ENSKMAG00000014305	polr1c	100	84.848	ENSPMGG00000012121	polr1c	100	84.848	Periophthalmus_magnuspinnatus
ENSKMAG00000014305	polr1c	58	30.769	ENSPMGG00000021249	polr2c	81	30.047	Periophthalmus_magnuspinnatus
ENSKMAG00000014305	polr1c	97	71.510	ENSPEMG00000006970	Polr1c	100	70.940	Peromyscus_maniculatus_bairdii
ENSKMAG00000014305	polr1c	97	69.318	ENSPMAG00000005560	polr1c	99	69.034	Petromyzon_marinus
ENSKMAG00000014305	polr1c	58	34.615	ENSPMAG00000004827	polr2c	81	32.500	Petromyzon_marinus
ENSKMAG00000014305	polr1c	99	73.559	ENSPCIG00000028137	POLR1C	99	73.559	Phascolarctos_cinereus
ENSKMAG00000014305	polr1c	97	92.023	ENSPFOG00000014342	POLR1C	100	92.023	Poecilia_formosa
ENSKMAG00000014305	polr1c	98	92.045	ENSPFOG00000014357	polr1c	99	92.045	Poecilia_formosa
ENSKMAG00000014305	polr1c	59	90.094	ENSPLAG00000004111	polr1c	99	81.383	Poecilia_latipinna
ENSKMAG00000014305	polr1c	100	90.909	ENSPMEG00000011877	-	100	92.023	Poecilia_mexicana
ENSKMAG00000014305	polr1c	100	90.909	ENSPMEG00000008420	polr1c	100	92.023	Poecilia_mexicana
ENSKMAG00000014305	polr1c	97	90.883	ENSPREG00000007985	polr1c	100	90.313	Poecilia_reticulata
ENSKMAG00000014305	polr1c	97	72.779	ENSPPYG00000016645	POLR1C	99	72.206	Pongo_abelii
ENSKMAG00000014305	polr1c	100	70.370	ENSPCOG00000024628	POLR1C	100	70.370	Propithecus_coquereli
ENSKMAG00000014305	polr1c	97	67.236	ENSPVAG00000005689	POLR1C	100	67.236	Pteropus_vampyrus
ENSKMAG00000014305	polr1c	97	88.604	ENSPNYG00000003620	polr1c	100	88.604	Pundamilia_nyererei
ENSKMAG00000014305	polr1c	97	80.627	ENSPNAG00000008443	polr1c	100	80.057	Pygocentrus_nattereri
ENSKMAG00000014305	polr1c	97	72.080	ENSRNOG00000019079	Polr1c	100	71.510	Rattus_norvegicus
ENSKMAG00000014305	polr1c	99	71.864	ENSRBIG00000007155	POLR1C	99	71.864	Rhinopithecus_bieti
ENSKMAG00000014305	polr1c	99	72.203	ENSRROG00000000257	POLR1C	99	72.203	Rhinopithecus_roxellana
ENSKMAG00000014305	polr1c	89	48.125	YPR110C	RPC40	95	48.125	Saccharomyces_cerevisiae
ENSKMAG00000014305	polr1c	100	72.391	ENSSBOG00000025735	POLR1C	100	72.391	Saimiri_boliviensis_boliviensis
ENSKMAG00000014305	polr1c	97	66.762	ENSSHAG00000014456	POLR1C	99	66.476	Sarcophilus_harrisii
ENSKMAG00000014305	polr1c	97	79.772	ENSSFOG00015019860	polr1c	100	79.202	Scleropages_formosus
ENSKMAG00000014305	polr1c	97	86.610	ENSSMAG00000018865	polr1c	100	86.610	Scophthalmus_maximus
ENSKMAG00000014305	polr1c	100	88.851	ENSSDUG00000015745	polr1c	100	88.851	Seriola_dumerili
ENSKMAG00000014305	polr1c	100	88.514	ENSSLDG00000018285	polr1c	100	88.514	Seriola_lalandi_dorsalis
ENSKMAG00000014305	polr1c	96	71.758	ENSSPUG00000011822	POLR1C	99	71.470	Sphenodon_punctatus
ENSKMAG00000014305	polr1c	97	87.749	ENSSPAG00000022369	polr1c	100	87.749	Stegastes_partitus
ENSKMAG00000014305	polr1c	98	71.671	ENSSSCG00000028007	POLR1C	99	71.105	Sus_scrofa
ENSKMAG00000014305	polr1c	94	71.386	ENSTGUG00000009159	POLR1C	99	70.796	Taeniopygia_guttata
ENSKMAG00000014305	polr1c	100	83.893	ENSTRUG00000006264	polr1c	100	84.046	Takifugu_rubripes
ENSKMAG00000014305	polr1c	74	68.914	ENSTTRG00000006344	POLR1C	76	68.165	Tursiops_truncatus
ENSKMAG00000014305	polr1c	97	72.365	ENSUAMG00000025602	POLR1C	100	71.795	Ursus_americanus
ENSKMAG00000014305	polr1c	97	72.365	ENSUMAG00000005938	POLR1C	100	71.795	Ursus_maritimus
ENSKMAG00000014305	polr1c	100	72.054	ENSVVUG00000028922	POLR1C	100	72.054	Vulpes_vulpes
ENSKMAG00000014305	polr1c	97	66.857	ENSXETG00000010882	polr1c	99	66.857	Xenopus_tropicalis
ENSKMAG00000014305	polr1c	97	90.598	ENSXCOG00000014185	polr1c	100	89.744	Xiphophorus_couchianus
ENSKMAG00000014305	polr1c	97	91.453	ENSXMAG00000015076	polr1c	100	91.453	Xiphophorus_maculatus