EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000014586 (Gene tree)
Gene ID: 108246012
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 14454 bases
Position: chrLWHD01000194.1:288594-303047
Accession: 108246012
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000019619	EST1	PF10374.9	4.8e-24	1	1
ENSKMAP00000019619	EST1_DNA_bind	PF10373.9	4.3e-41	1	1
ENSKMAP00000019619	PIN_4	PF13638.6	3.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000019884	-	5889	XM_017433332	ENSKMAP00000019619	1124 (aa)	XP_017288821	UPI0007F8D9B2

Gene Model

Click here to download ENSKMAG00000014586's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000014586's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000014586	smg5	99	61.333	ENSG00000198952	SMG5	50	59.524	Homo_sapiens
ENSKMAG00000014586	smg5	100	91.489	ENSAPOG00000019690	smg5	100	91.578	Acanthochromis_polyacanthus
ENSKMAG00000014586	smg5	91	77.667	ENSAMEG00000014458	SMG5	91	76.923	Ailuropoda_melanoleuca
ENSKMAG00000014586	smg5	100	82.829	ENSACIG00000001353	smg5	99	83.363	Amphilophus_citrinellus
ENSKMAG00000014586	smg5	100	91.548	ENSAOCG00000019483	smg5	100	91.192	Amphiprion_ocellaris
ENSKMAG00000014586	smg5	100	91.637	ENSAPEG00000022949	smg5	100	91.281	Amphiprion_percula
ENSKMAG00000014586	smg5	100	88.199	ENSATEG00000005348	smg5	100	88.188	Anabas_testudineus
ENSKMAG00000014586	smg5	99	61.368	ENSANAG00000032899	SMG5	51	59.524	Aotus_nancymaae
ENSKMAG00000014586	smg5	100	89.283	ENSACLG00000009311	smg5	100	88.475	Astatotilapia_calliptera
ENSKMAG00000014586	smg5	100	78.496	ENSAMXG00000024616	smg5	100	78.635	Astyanax_mexicanus
ENSKMAG00000014586	smg5	86	50.605	ENSBTAG00000021747	-	85	50.605	Bos_taurus
ENSKMAG00000014586	smg5	99	61.778	ENSBTAG00000009435	SMG5	50	58.791	Bos_taurus
ENSKMAG00000014586	smg5	99	61.368	ENSCJAG00000005684	SMG5	50	59.524	Callithrix_jacchus
ENSKMAG00000014586	smg5	99	60.393	ENSCAFG00000016839	SMG5	91	77.488	Canis_familiaris
ENSKMAG00000014586	smg5	99	60.393	ENSCAFG00020006061	SMG5	91	77.488	Canis_lupus_dingo
ENSKMAG00000014586	smg5	99	61.689	ENSCHIG00000007709	SMG5	50	58.974	Capra_hircus
ENSKMAG00000014586	smg5	85	51.117	ENSCHIG00000006323	-	93	51.117	Capra_hircus
ENSKMAG00000014586	smg5	99	61.634	ENSTSYG00000004099	SMG5	50	59.158	Carlito_syrichta
ENSKMAG00000014586	smg5	97	45.719	ENSCAPG00000003631	SMG5	91	54.579	Cavia_aperea
ENSKMAG00000014586	smg5	99	61.511	ENSCPOG00000015696	SMG5	50	60.073	Cavia_porcellus
ENSKMAG00000014586	smg5	99	60.904	ENSCCAG00000027409	SMG5	51	58.834	Cebus_capucinus
ENSKMAG00000014586	smg5	99	61.422	ENSCATG00000030539	SMG5	50	59.524	Cercocebus_atys
ENSKMAG00000014586	smg5	99	60.978	ENSCLAG00000003983	SMG5	50	59.341	Chinchilla_lanigera
ENSKMAG00000014586	smg5	99	61.422	ENSCSAG00000002120	SMG5	50	59.524	Chlorocebus_sabaeus
ENSKMAG00000014586	smg5	51	75.812	ENSCHOG00000008741	-	57	75.812	Choloepus_hoffmanni
ENSKMAG00000014586	smg5	94	61.696	ENSCPBG00000025848	SMG5	55	60.682	Chrysemys_picta_bellii
ENSKMAG00000014586	smg5	73	38.060	ENSCING00000008706	-	84	38.060	Ciona_intestinalis
ENSKMAG00000014586	smg5	99	59.309	ENSCANG00000029208	SMG5	50	54.281	Colobus_angolensis_palliatus
ENSKMAG00000014586	smg5	100	84.991	ENSCSEG00000014220	smg5	100	84.103	Cynoglossus_semilaevis
ENSKMAG00000014586	smg5	100	73.399	ENSCVAG00000000529	smg5	99	73.932	Cyprinodon_variegatus
ENSKMAG00000014586	smg5	100	77.208	ENSDARG00000041481	smg5	100	76.203	Danio_rerio
ENSKMAG00000014586	smg5	57	55.538	ENSDNOG00000000051	SMG5	50	58.545	Dasypus_novemcinctus
ENSKMAG00000014586	smg5	77	39.946	ENSDNOG00000039862	-	86	39.142	Dasypus_novemcinctus
ENSKMAG00000014586	smg5	63	53.448	ENSEBUG00000003739	smg5	89	53.563	Eptatretus_burgeri
ENSKMAG00000014586	smg5	66	79.437	ENSEEUG00000012690	SMG5	75	77.966	Erinaceus_europaeus
ENSKMAG00000014586	smg5	100	81.770	ENSELUG00000012585	smg5	100	81.134	Esox_lucius
ENSKMAG00000014586	smg5	93	78.673	ENSFCAG00000011783	SMG5	91	77.672	Felis_catus
ENSKMAG00000014586	smg5	59	63.976	ENSFALG00000001166	-	66	79.104	Ficedula_albicollis
ENSKMAG00000014586	smg5	98	60.799	ENSFDAG00000017388	SMG5	52	59.124	Fukomys_damarensis
ENSKMAG00000014586	smg5	98	79.566	ENSFHEG00000013939	smg5	94	92.381	Fundulus_heteroclitus
ENSKMAG00000014586	smg5	100	78.250	ENSGMOG00000007310	smg5	100	78.640	Gadus_morhua
ENSKMAG00000014586	smg5	99	63.749	ENSGALG00000029918	-	91	71.963	Gallus_gallus
ENSKMAG00000014586	smg5	93	91.374	ENSGAFG00000021691	smg5	99	91.374	Gambusia_affinis
ENSKMAG00000014586	smg5	100	85.450	ENSGACG00000013142	smg5	100	84.996	Gasterosteus_aculeatus
ENSKMAG00000014586	smg5	99	61.279	ENSGGOG00000010932	SMG5	50	59.341	Gorilla_gorilla
ENSKMAG00000014586	smg5	100	89.096	ENSHBUG00000008654	smg5	100	88.820	Haplochromis_burtoni
ENSKMAG00000014586	smg5	99	60.406	ENSHGLG00000019152	SMG5	50	58.425	Heterocephalus_glaber_female
ENSKMAG00000014586	smg5	86	76.271	ENSHCOG00000010229	smg5	93	83.855	Hippocampus_comes
ENSKMAG00000014586	smg5	100	78.242	ENSIPUG00000006624	Smg5	100	77.093	Ictalurus_punctatus
ENSKMAG00000014586	smg5	99	60.881	ENSSTOG00000001780	SMG5	50	59.158	Ictidomys_tridecemlineatus
ENSKMAG00000014586	smg5	99	61.504	ENSJJAG00000022763	Smg5	50	60.256	Jaculus_jaculus
ENSKMAG00000014586	smg5	100	89.413	ENSLBEG00000002145	smg5	100	89.591	Labrus_bergylta
ENSKMAG00000014586	smg5	99	57.383	ENSLACG00000010521	SMG5	99	57.294	Latimeria_chalumnae
ENSKMAG00000014586	smg5	99	61.408	ENSLAFG00000006241	SMG5	50	58.759	Loxodonta_africana
ENSKMAG00000014586	smg5	99	61.422	ENSMFAG00000045357	SMG5	50	59.524	Macaca_fascicularis
ENSKMAG00000014586	smg5	93	78.824	ENSMMUG00000000090	SMG5	94	75.682	Macaca_mulatta
ENSKMAG00000014586	smg5	99	61.333	ENSMNEG00000044425	SMG5	50	59.341	Macaca_nemestrina
ENSKMAG00000014586	smg5	99	56.510	ENSMLEG00000041192	SMG5	92	66.136	Mandrillus_leucophaeus
ENSKMAG00000014586	smg5	100	88.099	ENSMAMG00000010683	smg5	100	88.188	Mastacembelus_armatus
ENSKMAG00000014586	smg5	66	75.067	ENSMZEG00005016543	smg5	100	74.764	Maylandia_zebra
ENSKMAG00000014586	smg5	100	79.396	ENSMZEG00005015815	smg5	99	78.933	Maylandia_zebra
ENSKMAG00000014586	smg5	99	61.348	ENSMAUG00000010381	Smg5	50	60.440	Mesocricetus_auratus
ENSKMAG00000014586	smg5	99	61.354	ENSMICG00000002257	SMG5	50	58.242	Microcebus_murinus
ENSKMAG00000014586	smg5	99	60.850	ENSMOCG00000016590	Smg5	91	76.581	Microtus_ochrogaster
ENSKMAG00000014586	smg5	100	83.614	ENSMMOG00000017199	smg5	100	83.791	Mola_mola
ENSKMAG00000014586	smg5	74	33.681	ENSMODG00000004511	-	80	34.272	Monodelphis_domestica
ENSKMAG00000014586	smg5	69	34.232	ENSMODG00000004735	-	86	34.232	Monodelphis_domestica
ENSKMAG00000014586	smg5	77	32.193	ENSMODG00000004532	-	90	34.234	Monodelphis_domestica
ENSKMAG00000014586	smg5	70	33.846	ENSMODG00000010675	-	88	34.103	Monodelphis_domestica
ENSKMAG00000014586	smg5	100	87.633	ENSMALG00000010375	smg5	100	87.544	Monopterus_albus
ENSKMAG00000014586	smg5	99	60.993	MGP_CAROLIEiJ_G0025163	Smg5	100	88.827	Mus_caroli
ENSKMAG00000014586	smg5	99	61.052	ENSMUSG00000001415	Smg5	99	88.827	Mus_musculus
ENSKMAG00000014586	smg5	99	60.160	MGP_PahariEiJ_G0026606	Smg5	100	89.385	Mus_pahari
ENSKMAG00000014586	smg5	99	60.963	MGP_SPRETEiJ_G0026104	Smg5	100	88.827	Mus_spretus
ENSKMAG00000014586	smg5	94	59.284	ENSMPUG00000004546	SMG5	54	58.242	Mustela_putorius_furo
ENSKMAG00000014586	smg5	99	61.012	ENSMLUG00000008518	SMG5	50	58.425	Myotis_lucifugus
ENSKMAG00000014586	smg5	99	61.989	ENSNGAG00000020706	Smg5	50	59.524	Nannospalax_galili
ENSKMAG00000014586	smg5	78	49.754	ENSNGAG00000012101	-	92	49.144	Nannospalax_galili
ENSKMAG00000014586	smg5	97	76.972	ENSNBRG00000004332	smg5	97	76.789	Neolamprologus_brichardi
ENSKMAG00000014586	smg5	99	61.259	ENSNLEG00000012439	SMG5	50	59.341	Nomascus_leucogenys
ENSKMAG00000014586	smg5	99	61.689	ENSMEUG00000012834	SMG5	50	58.608	Notamacropus_eugenii
ENSKMAG00000014586	smg5	99	61.511	ENSOPRG00000009152	SMG5	50	58.242	Ochotona_princeps
ENSKMAG00000014586	smg5	99	60.582	ENSODEG00000012237	SMG5	50	59.707	Octodon_degus
ENSKMAG00000014586	smg5	100	89.343	ENSONIG00000008632	smg5	100	89.343	Oreochromis_niloticus
ENSKMAG00000014586	smg5	82	42.888	ENSOCUG00000023338	-	89	44.893	Oryctolagus_cuniculus
ENSKMAG00000014586	smg5	98	61.643	ENSOCUG00000012886	SMG5	52	58.791	Oryctolagus_cuniculus
ENSKMAG00000014586	smg5	100	85.778	ENSORLG00000016239	smg5	100	86.133	Oryzias_latipes
ENSKMAG00000014586	smg5	100	86.133	ENSORLG00020013127	smg5	100	86.578	Oryzias_latipes_hni
ENSKMAG00000014586	smg5	100	86.756	ENSORLG00015019014	smg5	100	87.022	Oryzias_latipes_hsok
ENSKMAG00000014586	smg5	84	86.532	ENSOMEG00000021330	smg5	93	86.241	Oryzias_melastigma
ENSKMAG00000014586	smg5	99	60.393	ENSOGAG00000004966	SMG5	50	58.425	Otolemur_garnettii
ENSKMAG00000014586	smg5	99	61.600	ENSOARG00000005778	SMG5	50	58.974	Ovis_aries
ENSKMAG00000014586	smg5	86	51.332	ENSOARG00000011963	-	93	51.332	Ovis_aries
ENSKMAG00000014586	smg5	99	61.244	ENSPPAG00000011996	SMG5	50	59.524	Pan_paniscus
ENSKMAG00000014586	smg5	91	78.713	ENSPPRG00000011901	SMG5	92	77.723	Panthera_pardus
ENSKMAG00000014586	smg5	83	76.427	ENSPTIG00000007892	SMG5	90	75.434	Panthera_tigris_altaica
ENSKMAG00000014586	smg5	86	78.652	ENSPTRG00000049282	-	83	77.183	Pan_troglodytes
ENSKMAG00000014586	smg5	99	61.244	ENSPTRG00000023925	SMG5	50	59.524	Pan_troglodytes
ENSKMAG00000014586	smg5	99	61.422	ENSPANG00000011201	SMG5	50	59.524	Papio_anubis
ENSKMAG00000014586	smg5	100	76.486	ENSPKIG00000009402	smg5	100	75.776	Paramormyrops_kingsleyae
ENSKMAG00000014586	smg5	98	64.144	ENSPSIG00000015198	SMG5	52	61.081	Pelodiscus_sinensis
ENSKMAG00000014586	smg5	100	72.405	ENSPMGG00000010465	smg5	100	71.972	Periophthalmus_magnuspinnatus
ENSKMAG00000014586	smg5	99	61.170	ENSPEMG00000001819	Smg5	50	60.073	Peromyscus_maniculatus_bairdii
ENSKMAG00000014586	smg5	87	59.637	ENSPMAG00000000410	smg5	91	62.260	Petromyzon_marinus
ENSKMAG00000014586	smg5	99	62.411	ENSPCIG00000018938	SMG5	50	60.806	Phascolarctos_cinereus
ENSKMAG00000014586	smg5	100	89.591	ENSPFOG00000010191	smg5	100	89.324	Poecilia_formosa
ENSKMAG00000014586	smg5	100	89.591	ENSPLAG00000009332	smg5	100	89.413	Poecilia_latipinna
ENSKMAG00000014586	smg5	100	89.680	ENSPMEG00000014105	smg5	100	89.413	Poecilia_mexicana
ENSKMAG00000014586	smg5	100	90.125	ENSPREG00000017713	smg5	100	89.947	Poecilia_reticulata
ENSKMAG00000014586	smg5	99	61.333	ENSPPYG00000000723	SMG5	50	59.524	Pongo_abelii
ENSKMAG00000014586	smg5	82	74.786	ENSPCAG00000008412	SMG5	71	74.786	Procavia_capensis
ENSKMAG00000014586	smg5	99	61.264	ENSPCOG00000004741	SMG5	51	58.791	Propithecus_coquereli
ENSKMAG00000014586	smg5	93	65.581	ENSPVAG00000016748	SMG5	92	64.569	Pteropus_vampyrus
ENSKMAG00000014586	smg5	100	88.703	ENSPNYG00000013397	smg5	100	88.240	Pundamilia_nyererei
ENSKMAG00000014586	smg5	100	78.774	ENSPNAG00000028363	smg5	100	78.330	Pygocentrus_nattereri
ENSKMAG00000014586	smg5	99	61.264	ENSRNOG00000019590	Smg5	50	59.890	Rattus_norvegicus
ENSKMAG00000014586	smg5	99	61.422	ENSRBIG00000027428	SMG5	50	59.524	Rhinopithecus_bieti
ENSKMAG00000014586	smg5	99	61.333	ENSRROG00000030035	SMG5	50	59.341	Rhinopithecus_roxellana
ENSKMAG00000014586	smg5	99	61.067	ENSSBOG00000033339	SMG5	50	59.341	Saimiri_boliviensis_boliviensis
ENSKMAG00000014586	smg5	70	41.076	ENSSHAG00000009572	-	80	41.076	Sarcophilus_harrisii
ENSKMAG00000014586	smg5	98	62.072	ENSSHAG00000014163	SMG5	52	60.145	Sarcophilus_harrisii
ENSKMAG00000014586	smg5	69	36.567	ENSSHAG00000000561	-	89	36.070	Sarcophilus_harrisii
ENSKMAG00000014586	smg5	51	36.318	ENSSHAG00000000935	-	82	36.318	Sarcophilus_harrisii
ENSKMAG00000014586	smg5	100	75.599	ENSSFOG00015024175	smg5	100	76.169	Scleropages_formosus
ENSKMAG00000014586	smg5	100	88.089	ENSSMAG00000013059	smg5	100	88.178	Scophthalmus_maximus
ENSKMAG00000014586	smg5	100	90.539	ENSSDUG00000007122	smg5	100	90.363	Seriola_dumerili
ENSKMAG00000014586	smg5	100	90.861	ENSSLDG00000011418	smg5	100	91.038	Seriola_lalandi_dorsalis
ENSKMAG00000014586	smg5	94	60.553	ENSSPUG00000002260	SMG5	55	59.964	Sphenodon_punctatus
ENSKMAG00000014586	smg5	100	92.021	ENSSPAG00000014266	smg5	100	91.489	Stegastes_partitus
ENSKMAG00000014586	smg5	99	47.509	ENSSSCG00000039308	-	92	54.545	Sus_scrofa
ENSKMAG00000014586	smg5	99	61.511	ENSSSCG00000006490	-	92	70.227	Sus_scrofa
ENSKMAG00000014586	smg5	99	63.612	ENSTGUG00000003748	-	50	60.862	Taeniopygia_guttata
ENSKMAG00000014586	smg5	100	80.053	ENSTRUG00000012580	smg5	100	79.576	Takifugu_rubripes
ENSKMAG00000014586	smg5	100	80.352	ENSTNIG00000010303	smg5	100	79.648	Tetraodon_nigroviridis
ENSKMAG00000014586	smg5	52	84.729	ENSTBEG00000002777	SMG5	58	84.729	Tupaia_belangeri
ENSKMAG00000014586	smg5	99	58.044	ENSTTRG00000001401	SMG5	50	56.410	Tursiops_truncatus
ENSKMAG00000014586	smg5	92	76.667	ENSUAMG00000013721	SMG5	91	76.960	Ursus_americanus
ENSKMAG00000014586	smg5	91	75.062	ENSUMAG00000018041	SMG5	95	72.979	Ursus_maritimus
ENSKMAG00000014586	smg5	92	70.792	ENSVPAG00000009446	SMG5	93	66.029	Vicugna_pacos
ENSKMAG00000014586	smg5	99	60.571	ENSVVUG00000005887	SMG5	91	77.488	Vulpes_vulpes
ENSKMAG00000014586	smg5	79	53.683	ENSXETG00000033791	SMG5	99	52.392	Xenopus_tropicalis
ENSKMAG00000014586	smg5	92	91.892	ENSXCOG00000004379	smg5	100	91.892	Xiphophorus_couchianus
ENSKMAG00000014586	smg5	100	89.413	ENSXMAG00000013499	smg5	100	89.146	Xiphophorus_maculatus