EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000014794 (Gene tree)
Gene ID: 108235066
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 6155 bases
Position: chrLWHD01000032.1:1917443-1923597
Accession: 108235066
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000019906	RRM_1	PF00076.22	2.1e-07	1	1
ENSKMAP00000019893	RRM_1	PF00076.22	2.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000020159	-	1820	XM_017414792	ENSKMAP00000019893	582 (aa)	XP_017270281	UPI0007F88B5B
ENSKMAT00000020172	-	1715	XM_017414794	ENSKMAP00000019906	547 (aa)	XP_017270283	-

Gene Model

Click here to download ENSKMAG00000014794's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000014794's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000014794	cpsf6	96	47.619	ENSG00000149532	CPSF7	100	50.667	Homo_sapiens
ENSKMAG00000014794	cpsf6	61	86.667	ENSG00000111605	CPSF6	88	79.787	Homo_sapiens
ENSKMAG00000014794	cpsf6	94	94.788	ENSAOCG00000017865	cpsf6	94	94.595	Amphiprion_ocellaris
ENSKMAG00000014794	cpsf6	64	45.349	ENSANAG00000024635	CPSF7	69	47.849	Aotus_nancymaae
ENSKMAG00000014794	cpsf6	95	93.153	ENSACLG00000026325	cpsf6	55	93.146	Astatotilapia_calliptera
ENSKMAG00000014794	cpsf6	95	79.961	ENSAMXG00000016745	CPSF6	87	90.303	Astyanax_mexicanus
ENSKMAG00000014794	cpsf6	65	49.741	ENSBTAG00000015263	CPSF7	71	52.778	Bos_taurus
ENSKMAG00000014794	cpsf6	61	86.667	ENSCJAG00000001798	CPSF6	71	89.157	Callithrix_jacchus
ENSKMAG00000014794	cpsf6	96	47.619	ENSCJAG00000019282	CPSF7	80	57.237	Callithrix_jacchus
ENSKMAG00000014794	cpsf6	65	50.276	ENSCAFG00000016152	CPSF7	71	53.333	Canis_familiaris
ENSKMAG00000014794	cpsf6	59	80.892	ENSCAFG00000000424	CPSF6	72	81.290	Canis_familiaris
ENSKMAG00000014794	cpsf6	65	50.276	ENSCAFG00020012753	CPSF7	71	53.333	Canis_lupus_dingo
ENSKMAG00000014794	cpsf6	65	49.741	ENSCHIG00000014655	CPSF7	71	52.778	Capra_hircus
ENSKMAG00000014794	cpsf6	65	49.741	ENSTSYG00000010138	-	71	53.333	Carlito_syrichta
ENSKMAG00000014794	cpsf6	65	87.349	ENSTSYG00000008591	CPSF6	70	89.157	Carlito_syrichta
ENSKMAG00000014794	cpsf6	54	58.042	ENSCAPG00000006384	CPSF7	70	53.333	Cavia_aperea
ENSKMAG00000014794	cpsf6	57	58.042	ENSCPOG00000009980	CPSF7	71	53.333	Cavia_porcellus
ENSKMAG00000014794	cpsf6	61	87.349	ENSCCAG00000028149	CPSF6	71	88.623	Cebus_capucinus
ENSKMAG00000014794	cpsf6	65	49.721	ENSCCAG00000032367	CPSF7	71	52.778	Cebus_capucinus
ENSKMAG00000014794	cpsf6	96	47.619	ENSCATG00000042801	CPSF7	73	52.778	Cercocebus_atys
ENSKMAG00000014794	cpsf6	61	87.349	ENSCATG00000039288	CPSF6	72	88.623	Cercocebus_atys
ENSKMAG00000014794	cpsf6	57	58.042	ENSCLAG00000003174	CPSF7	71	52.778	Chinchilla_lanigera
ENSKMAG00000014794	cpsf6	96	47.619	ENSCSAG00000006414	CPSF7	73	52.778	Chlorocebus_sabaeus
ENSKMAG00000014794	cpsf6	58	87.349	ENSCANG00000037294	CPSF6	69	88.623	Colobus_angolensis_palliatus
ENSKMAG00000014794	cpsf6	65	50.259	ENSCGRG00001020382	Cpsf7	71	53.889	Cricetulus_griseus_chok1gshd
ENSKMAG00000014794	cpsf6	68	50.259	ENSCGRG00000017954	Cpsf7	73	53.889	Cricetulus_griseus_crigri
ENSKMAG00000014794	cpsf6	52	40.206	ENSCSEG00000001956	CPSF7	57	45.455	Cynoglossus_semilaevis
ENSKMAG00000014794	cpsf6	94	93.064	ENSCSEG00000008967	cpsf6	52	93.684	Cynoglossus_semilaevis
ENSKMAG00000014794	cpsf6	95	91.532	ENSCVAG00000014857	cpsf6	55	91.900	Cyprinodon_variegatus
ENSKMAG00000014794	cpsf6	78	37.915	ENSCVAG00000007392	CPSF7	81	42.308	Cyprinodon_variegatus
ENSKMAG00000014794	cpsf6	65	49.741	ENSDNOG00000018517	CPSF7	80	57.895	Dasypus_novemcinctus
ENSKMAG00000014794	cpsf6	54	50.307	FBgn0035872	CG7185	74	42.202	Drosophila_melanogaster
ENSKMAG00000014794	cpsf6	65	49.738	ENSETEG00000003765	CPSF7	71	51.667	Echinops_telfairi
ENSKMAG00000014794	cpsf6	65	81.106	ENSETEG00000002097	CPSF6	63	81.373	Echinops_telfairi
ENSKMAG00000014794	cpsf6	94	56.061	ENSEBUG00000003540	cpsf6	68	82.036	Eptatretus_burgeri
ENSKMAG00000014794	cpsf6	65	49.741	ENSEASG00005008196	CPSF7	71	53.333	Equus_asinus_asinus
ENSKMAG00000014794	cpsf6	50	72.289	ENSECAG00000018521	CPSF7	82	57.895	Equus_caballus
ENSKMAG00000014794	cpsf6	50	59.350	ENSEEUG00000005966	-	68	58.974	Erinaceus_europaeus
ENSKMAG00000014794	cpsf6	74	55.118	ENSFCAG00000013677	CPSF7	82	57.895	Felis_catus
ENSKMAG00000014794	cpsf6	64	55.135	ENSFALG00000011927	CPSF7	76	58.721	Ficedula_albicollis
ENSKMAG00000014794	cpsf6	95	36.964	ENSFDAG00000003919	CPSF7	71	53.333	Fukomys_damarensis
ENSKMAG00000014794	cpsf6	52	90.033	ENSFHEG00000019693	cpsf6	57	85.673	Fundulus_heteroclitus
ENSKMAG00000014794	cpsf6	53	96.639	ENSGMOG00000012951	cpsf6	53	96.639	Gadus_morhua
ENSKMAG00000014794	cpsf6	99	40.596	ENSGALG00000040962	CPSF7	63	57.558	Gallus_gallus
ENSKMAG00000014794	cpsf6	94	87.645	ENSGACG00000019685	cpsf6	52	92.281	Gasterosteus_aculeatus
ENSKMAG00000014794	cpsf6	61	87.349	ENSGGOG00000008211	CPSF6	72	88.623	Gorilla_gorilla
ENSKMAG00000014794	cpsf6	95	93.333	ENSHBUG00000005998	cpsf6	94	93.642	Haplochromis_burtoni
ENSKMAG00000014794	cpsf6	88	42.213	ENSHGLG00000019090	-	73	53.333	Heterocephalus_glaber_female
ENSKMAG00000014794	cpsf6	88	40.041	ENSHGLG00100013933	-	74	53.333	Heterocephalus_glaber_male
ENSKMAG00000014794	cpsf6	95	85.484	ENSHCOG00000014555	cpsf6	54	73.231	Hippocampus_comes
ENSKMAG00000014794	cpsf6	65	49.741	ENSSTOG00000007708	CPSF7	71	53.333	Ictidomys_tridecemlineatus
ENSKMAG00000014794	cpsf6	96	48.148	ENSJJAG00000019390	Cpsf7	73	53.333	Jaculus_jaculus
ENSKMAG00000014794	cpsf6	56	38.732	ENSLBEG00000000947	CPSF7	61	46.552	Labrus_bergylta
ENSKMAG00000014794	cpsf6	95	90.925	ENSLBEG00000015762	cpsf6	55	91.489	Labrus_bergylta
ENSKMAG00000014794	cpsf6	93	33.585	ENSLACG00000005542	CPSF7	69	43.590	Latimeria_chalumnae
ENSKMAG00000014794	cpsf6	66	88.024	ENSLOCG00000016190	cpsf6	63	88.024	Lepisosteus_oculatus
ENSKMAG00000014794	cpsf6	69	77.059	ENSLAFG00000030413	CPSF6	78	80.208	Loxodonta_africana
ENSKMAG00000014794	cpsf6	65	49.741	ENSLAFG00000032084	CPSF7	71	53.333	Loxodonta_africana
ENSKMAG00000014794	cpsf6	61	87.349	ENSMFAG00000045318	CPSF6	72	88.623	Macaca_fascicularis
ENSKMAG00000014794	cpsf6	65	49.721	ENSMFAG00000001401	CPSF7	71	52.778	Macaca_fascicularis
ENSKMAG00000014794	cpsf6	96	47.619	ENSMMUG00000015280	CPSF7	73	52.778	Macaca_mulatta
ENSKMAG00000014794	cpsf6	61	86.667	ENSMNEG00000036311	CPSF6	72	89.157	Macaca_nemestrina
ENSKMAG00000014794	cpsf6	96	47.619	ENSMNEG00000029585	CPSF7	73	52.778	Macaca_nemestrina
ENSKMAG00000014794	cpsf6	65	49.721	ENSMLEG00000031269	CPSF7	69	52.778	Mandrillus_leucophaeus
ENSKMAG00000014794	cpsf6	58	87.349	ENSMLEG00000003957	CPSF6	69	88.623	Mandrillus_leucophaeus
ENSKMAG00000014794	cpsf6	95	91.532	ENSMAMG00000010385	cpsf6	95	92.252	Mastacembelus_armatus
ENSKMAG00000014794	cpsf6	95	93.333	ENSMZEG00005007975	cpsf6	94	93.642	Maylandia_zebra
ENSKMAG00000014794	cpsf6	96	40.242	ENSMGAG00000004876	CPSF7	62	60.241	Meleagris_gallopavo
ENSKMAG00000014794	cpsf6	65	49.741	ENSMAUG00000013020	Cpsf7	71	53.333	Mesocricetus_auratus
ENSKMAG00000014794	cpsf6	65	49.741	ENSMICG00000013788	CPSF7	71	53.333	Microcebus_murinus
ENSKMAG00000014794	cpsf6	61	86.667	ENSMICG00000007385	-	72	89.157	Microcebus_murinus
ENSKMAG00000014794	cpsf6	65	49.741	ENSMOCG00000000072	Cpsf7	71	53.333	Microtus_ochrogaster
ENSKMAG00000014794	cpsf6	65	51.531	ENSMODG00000020364	CPSF7	72	51.042	Monodelphis_domestica
ENSKMAG00000014794	cpsf6	75	93.750	ENSMALG00000014908	cpsf6	73	93.939	Monopterus_albus
ENSKMAG00000014794	cpsf6	65	49.741	MGP_CAROLIEiJ_G0022690	Cpsf7	71	53.333	Mus_caroli
ENSKMAG00000014794	cpsf6	65	49.741	ENSMUSG00000034820	Cpsf7	71	53.333	Mus_musculus
ENSKMAG00000014794	cpsf6	65	49.741	MGP_PahariEiJ_G0014184	Cpsf7	71	53.333	Mus_pahari
ENSKMAG00000014794	cpsf6	65	49.741	MGP_SPRETEiJ_G0023604	Cpsf7	71	53.333	Mus_spretus
ENSKMAG00000014794	cpsf6	61	48.705	ENSMPUG00000014163	CPSF7	67	52.222	Mustela_putorius_furo
ENSKMAG00000014794	cpsf6	77	72.115	ENSMLUG00000023960	-	76	71.038	Myotis_lucifugus
ENSKMAG00000014794	cpsf6	95	40.706	ENSMLUG00000013278	CPSF7	73	53.333	Myotis_lucifugus
ENSKMAG00000014794	cpsf6	68	85.507	ENSMLUG00000028728	-	84	85.417	Myotis_lucifugus
ENSKMAG00000014794	cpsf6	65	49.741	ENSNGAG00000005031	Cpsf7	71	53.333	Nannospalax_galili
ENSKMAG00000014794	cpsf6	94	93.834	ENSNBRG00000004089	cpsf6	94	93.642	Neolamprologus_brichardi
ENSKMAG00000014794	cpsf6	61	86.667	ENSNLEG00000003798	CPSF6	72	89.157	Nomascus_leucogenys
ENSKMAG00000014794	cpsf6	65	49.721	ENSNLEG00000002529	CPSF7	65	52.778	Nomascus_leucogenys
ENSKMAG00000014794	cpsf6	65	52.880	ENSMEUG00000002261	CPSF7	71	54.444	Notamacropus_eugenii
ENSKMAG00000014794	cpsf6	91	64.286	ENSODEG00000004418	-	78	88.024	Octodon_degus
ENSKMAG00000014794	cpsf6	65	49.162	ENSODEG00000002610	CPSF7	72	53.005	Octodon_degus
ENSKMAG00000014794	cpsf6	94	92.308	ENSONIG00000011702	cpsf6	95	91.171	Oreochromis_niloticus
ENSKMAG00000014794	cpsf6	95	42.463	ENSOCUG00000024726	CPSF7	71	52.778	Oryctolagus_cuniculus
ENSKMAG00000014794	cpsf6	55	37.037	ENSORLG00000006495	CPSF7	61	38.690	Oryzias_latipes
ENSKMAG00000014794	cpsf6	55	37.037	ENSORLG00020012657	CPSF7	61	38.690	Oryzias_latipes_hni
ENSKMAG00000014794	cpsf6	55	37.037	ENSORLG00015011091	CPSF7	60	38.037	Oryzias_latipes_hsok
ENSKMAG00000014794	cpsf6	60	39.394	ENSOMEG00000000539	CPSF7	57	44.444	Oryzias_melastigma
ENSKMAG00000014794	cpsf6	65	49.741	ENSOGAG00000027958	CPSF7	66	53.333	Otolemur_garnettii
ENSKMAG00000014794	cpsf6	65	49.741	ENSOARG00000012937	CPSF7	65	52.778	Ovis_aries
ENSKMAG00000014794	cpsf6	65	49.721	ENSPPAG00000028232	CPSF7	70	52.778	Pan_paniscus
ENSKMAG00000014794	cpsf6	65	50.276	ENSPPRG00000008538	CPSF7	71	53.333	Panthera_pardus
ENSKMAG00000014794	cpsf6	65	50.276	ENSPTIG00000021699	CPSF7	71	53.333	Panthera_tigris_altaica
ENSKMAG00000014794	cpsf6	61	87.349	ENSPTRG00000005205	CPSF6	72	88.623	Pan_troglodytes
ENSKMAG00000014794	cpsf6	65	49.721	ENSPTRG00000003742	CPSF7	71	52.778	Pan_troglodytes
ENSKMAG00000014794	cpsf6	65	49.721	ENSPANG00000006037	CPSF7	67	52.778	Papio_anubis
ENSKMAG00000014794	cpsf6	75	91.803	ENSPANG00000011641	CPSF6	72	88.623	Papio_anubis
ENSKMAG00000014794	cpsf6	65	42.289	ENSPKIG00000018054	CPSF7	76	43.085	Paramormyrops_kingsleyae
ENSKMAG00000014794	cpsf6	52	89.510	ENSPKIG00000022613	CPSF6	52	89.510	Paramormyrops_kingsleyae
ENSKMAG00000014794	cpsf6	95	40.520	ENSPEMG00000012648	Cpsf7	73	53.333	Peromyscus_maniculatus_bairdii
ENSKMAG00000014794	cpsf6	51	42.808	ENSPMAG00000008077	-	68	48.663	Petromyzon_marinus
ENSKMAG00000014794	cpsf6	65	51.531	ENSPCIG00000002551	CPSF7	73	63.636	Phascolarctos_cinereus
ENSKMAG00000014794	cpsf6	94	89.313	ENSPFOG00000006990	cpsf6	57	95.896	Poecilia_formosa
ENSKMAG00000014794	cpsf6	94	94.798	ENSPLAG00000005715	cpsf6	55	96.262	Poecilia_latipinna
ENSKMAG00000014794	cpsf6	94	94.798	ENSPMEG00000001353	cpsf6	55	96.262	Poecilia_mexicana
ENSKMAG00000014794	cpsf6	94	92.857	ENSPREG00000004417	cpsf6	94	93.050	Poecilia_reticulata
ENSKMAG00000014794	cpsf6	65	49.721	ENSPPYG00000003188	CPSF7	71	52.778	Pongo_abelii
ENSKMAG00000014794	cpsf6	65	49.741	ENSPCOG00000011976	CPSF7	71	53.333	Propithecus_coquereli
ENSKMAG00000014794	cpsf6	61	87.349	ENSPCOG00000024384	CPSF6	71	88.623	Propithecus_coquereli
ENSKMAG00000014794	cpsf6	65	49.741	ENSPVAG00000010675	CPSF7	71	53.333	Pteropus_vampyrus
ENSKMAG00000014794	cpsf6	95	93.333	ENSPNYG00000020315	cpsf6	55	93.458	Pundamilia_nyererei
ENSKMAG00000014794	cpsf6	55	44.737	ENSPNAG00000015073	CPSF7	69	46.012	Pygocentrus_nattereri
ENSKMAG00000014794	cpsf6	95	40.520	ENSRNOG00000020668	Cpsf7	73	53.333	Rattus_norvegicus
ENSKMAG00000014794	cpsf6	96	47.619	ENSRBIG00000031429	CPSF7	82	57.237	Rhinopithecus_bieti
ENSKMAG00000014794	cpsf6	61	87.349	ENSRBIG00000042827	CPSF6	72	88.623	Rhinopithecus_bieti
ENSKMAG00000014794	cpsf6	65	49.721	ENSRROG00000045009	CPSF7	71	52.778	Rhinopithecus_roxellana
ENSKMAG00000014794	cpsf6	61	86.667	ENSRROG00000042758	CPSF6	72	89.157	Rhinopithecus_roxellana
ENSKMAG00000014794	cpsf6	65	49.721	ENSSBOG00000018431	CPSF7	71	52.778	Saimiri_boliviensis_boliviensis
ENSKMAG00000014794	cpsf6	58	87.349	ENSSBOG00000010652	CPSF6	70	88.623	Saimiri_boliviensis_boliviensis
ENSKMAG00000014794	cpsf6	62	51.832	ENSSHAG00000011964	CPSF7	69	54.444	Sarcophilus_harrisii
ENSKMAG00000014794	cpsf6	73	41.379	ENSSFOG00015010288	cpsf7	73	41.379	Scleropages_formosus
ENSKMAG00000014794	cpsf6	95	92.613	ENSSDUG00000005024	cpsf6	95	93.333	Seriola_dumerili
ENSKMAG00000014794	cpsf6	95	92.613	ENSSLDG00000009042	cpsf6	95	93.333	Seriola_lalandi_dorsalis
ENSKMAG00000014794	cpsf6	69	86.667	ENSSARG00000006743	CPSF6	63	89.157	Sorex_araneus
ENSKMAG00000014794	cpsf6	65	51.031	ENSSPUG00000019344	CPSF7	73	55.682	Sphenodon_punctatus
ENSKMAG00000014794	cpsf6	95	93.682	ENSSPAG00000013906	cpsf6	94	94.981	Stegastes_partitus
ENSKMAG00000014794	cpsf6	65	49.741	ENSSSCG00000013083	CPSF7	80	57.895	Sus_scrofa
ENSKMAG00000014794	cpsf6	62	52.778	ENSTGUG00000006513	CPSF7	71	56.000	Taeniopygia_guttata
ENSKMAG00000014794	cpsf6	94	90.347	ENSTRUG00000016461	cpsf6	52	90.175	Takifugu_rubripes
ENSKMAG00000014794	cpsf6	61	49.223	ENSTTRG00000011085	CPSF7	70	53.333	Tursiops_truncatus
ENSKMAG00000014794	cpsf6	65	50.276	ENSUAMG00000017809	CPSF7	71	53.333	Ursus_americanus
ENSKMAG00000014794	cpsf6	96	48.148	ENSUMAG00000011825	CPSF7	73	53.333	Ursus_maritimus
ENSKMAG00000014794	cpsf6	56	86.667	ENSUMAG00000020779	CPSF6	69	89.157	Ursus_maritimus
ENSKMAG00000014794	cpsf6	65	49.741	ENSVVUG00000004939	CPSF7	80	57.895	Vulpes_vulpes
ENSKMAG00000014794	cpsf6	97	42.593	ENSXETG00000006715	cpsf7	66	49.438	Xenopus_tropicalis
ENSKMAG00000014794	cpsf6	94	94.412	ENSXCOG00000013423	cpsf6	52	97.544	Xiphophorus_couchianus
ENSKMAG00000014794	cpsf6	94	85.766	ENSXMAG00000003459	cpsf6	55	96.262	Xiphophorus_maculatus