EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000015642 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 4934 bases
Position: chrLWHD01000038.1:2295746-2300679
Accession: ZDB-GENE-990415-180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000021047	zf-CCCH	PF00642.24	1.8e-21	1	2
ENSKMAP00000021047	zf-CCCH	PF00642.24	1.8e-21	2	2
ENSKMAP00000021047	zf-CCHC	PF00098.23	3.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000021324	-	1319	-	ENSKMAP00000021047	265 (aa)	-	UPI0007F8B52C

Gene Model

Click here to download ENSKMAG00000015642's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000015642's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000015642	cpsf4	100	81.852	ENSG00000160917	CPSF4	100	96.429	Homo_sapiens
ENSKMAG00000015642	cpsf4	67	85.311	ENSAPOG00000004921	cpsf4	100	85.311	Acanthochromis_polyacanthus
ENSKMAG00000015642	cpsf4	100	82.222	ENSAMEG00000006252	CPSF4	100	82.222	Ailuropoda_melanoleuca
ENSKMAG00000015642	cpsf4	100	83.396	ENSACIG00000009248	cpsf4	100	83.396	Amphilophus_citrinellus
ENSKMAG00000015642	cpsf4	100	91.698	ENSAOCG00000019616	cpsf4	100	91.698	Amphiprion_ocellaris
ENSKMAG00000015642	cpsf4	100	91.698	ENSAPEG00000011679	cpsf4	100	91.698	Amphiprion_percula
ENSKMAG00000015642	cpsf4	100	90.637	ENSATEG00000007010	cpsf4	100	90.637	Anabas_testudineus
ENSKMAG00000015642	cpsf4	100	80.741	ENSACAG00000012941	CPSF4	89	80.741	Anolis_carolinensis
ENSKMAG00000015642	cpsf4	100	81.852	ENSANAG00000021360	CPSF4	100	81.852	Aotus_nancymaae
ENSKMAG00000015642	cpsf4	100	89.811	ENSACLG00000010374	cpsf4	100	89.811	Astatotilapia_calliptera
ENSKMAG00000015642	cpsf4	100	82.222	ENSAMXG00000031647	cpsf4	100	82.222	Astyanax_mexicanus
ENSKMAG00000015642	cpsf4	100	78.868	ENSBTAG00000002090	CPSF4	100	78.868	Bos_taurus
ENSKMAG00000015642	cpsf4	100	81.852	ENSCJAG00000015826	CPSF4	100	81.852	Callithrix_jacchus
ENSKMAG00000015642	cpsf4	100	82.222	ENSCAFG00000015036	CPSF4	99	85.455	Canis_familiaris
ENSKMAG00000015642	cpsf4	100	78.148	ENSCAFG00020014462	CPSF4	100	78.148	Canis_lupus_dingo
ENSKMAG00000015642	cpsf4	100	81.852	ENSCHIG00000014313	CPSF4	100	81.852	Capra_hircus
ENSKMAG00000015642	cpsf4	89	73.529	ENSTSYG00000008195	-	99	73.171	Carlito_syrichta
ENSKMAG00000015642	cpsf4	100	78.868	ENSTSYG00000005712	-	100	78.868	Carlito_syrichta
ENSKMAG00000015642	cpsf4	100	71.910	ENSTSYG00000014604	-	100	71.910	Carlito_syrichta
ENSKMAG00000015642	cpsf4	82	82.353	ENSCAPG00000013881	CPSF4	87	82.353	Cavia_aperea
ENSKMAG00000015642	cpsf4	100	78.491	ENSCPOG00000001783	CPSF4	100	78.491	Cavia_porcellus
ENSKMAG00000015642	cpsf4	100	81.852	ENSCCAG00000028291	CPSF4	100	81.852	Cebus_capucinus
ENSKMAG00000015642	cpsf4	100	81.852	ENSCATG00000038440	CPSF4	100	81.852	Cercocebus_atys
ENSKMAG00000015642	cpsf4	100	81.852	ENSCLAG00000007050	CPSF4	100	81.852	Chinchilla_lanigera
ENSKMAG00000015642	cpsf4	100	81.852	ENSCSAG00000017795	CPSF4	100	81.852	Chlorocebus_sabaeus
ENSKMAG00000015642	cpsf4	63	78.313	ENSCPBG00000010269	-	100	78.313	Chrysemys_picta_bellii
ENSKMAG00000015642	cpsf4	80	82.110	ENSCPBG00000020869	CPSF4	100	82.110	Chrysemys_picta_bellii
ENSKMAG00000015642	cpsf4	97	55.078	ENSCING00000021080	-	97	55.078	Ciona_intestinalis
ENSKMAG00000015642	cpsf4	96	53.901	ENSCSAVG00000011469	-	97	53.901	Ciona_savignyi
ENSKMAG00000015642	cpsf4	100	81.852	ENSCANG00000019384	CPSF4	100	81.852	Colobus_angolensis_palliatus
ENSKMAG00000015642	cpsf4	100	78.491	ENSCGRG00001024184	Cpsf4	100	78.491	Cricetulus_griseus_chok1gshd
ENSKMAG00000015642	cpsf4	100	82.222	ENSCGRG00000013892	Cpsf4	100	82.222	Cricetulus_griseus_crigri
ENSKMAG00000015642	cpsf4	100	89.057	ENSCSEG00000019055	cpsf4	100	89.057	Cynoglossus_semilaevis
ENSKMAG00000015642	cpsf4	100	89.434	ENSCVAG00000016528	cpsf4	100	89.434	Cyprinodon_variegatus
ENSKMAG00000015642	cpsf4	100	82.657	ENSDARG00000020217	cpsf4	100	82.657	Danio_rerio
ENSKMAG00000015642	cpsf4	100	82.222	ENSDNOG00000006344	CPSF4	100	82.222	Dasypus_novemcinctus
ENSKMAG00000015642	cpsf4	80	82.569	ENSDORG00000000742	Cpsf4	100	82.569	Dipodomys_ordii
ENSKMAG00000015642	cpsf4	100	54.967	FBgn0015621	Clp	99	54.967	Drosophila_melanogaster
ENSKMAG00000015642	cpsf4	71	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSKMAG00000015642	cpsf4	99	64.419	ENSEBUG00000012552	cpsf4	98	64.419	Eptatretus_burgeri
ENSKMAG00000015642	cpsf4	100	78.491	ENSEASG00005002487	CPSF4	100	78.491	Equus_asinus_asinus
ENSKMAG00000015642	cpsf4	100	82.222	ENSECAG00000007525	CPSF4	100	82.222	Equus_caballus
ENSKMAG00000015642	cpsf4	63	91.045	ENSEEUG00000002158	CPSF4	73	91.045	Erinaceus_europaeus
ENSKMAG00000015642	cpsf4	100	83.824	ENSELUG00000011481	cpsf4	100	84.191	Esox_lucius
ENSKMAG00000015642	cpsf4	100	82.222	ENSFCAG00000015070	CPSF4	100	82.222	Felis_catus
ENSKMAG00000015642	cpsf4	62	56.395	ENSFALG00000012906	-	100	56.395	Ficedula_albicollis
ENSKMAG00000015642	cpsf4	100	78.113	ENSFALG00000013799	CPSF4	100	78.113	Ficedula_albicollis
ENSKMAG00000015642	cpsf4	90	81.557	ENSFDAG00000014092	CPSF4	100	81.557	Fukomys_damarensis
ENSKMAG00000015642	cpsf4	100	90.566	ENSFHEG00000010880	cpsf4	100	90.566	Fundulus_heteroclitus
ENSKMAG00000015642	cpsf4	100	80.443	ENSGMOG00000002330	cpsf4	100	80.443	Gadus_morhua
ENSKMAG00000015642	cpsf4	100	78.491	ENSGALG00000004714	CPSF4	100	78.491	Gallus_gallus
ENSKMAG00000015642	cpsf4	99	37.158	ENSGALG00000004441	-	98	37.158	Gallus_gallus
ENSKMAG00000015642	cpsf4	100	90.566	ENSGAFG00000010580	cpsf4	100	90.566	Gambusia_affinis
ENSKMAG00000015642	cpsf4	100	84.701	ENSGACG00000007792	cpsf4	100	84.701	Gasterosteus_aculeatus
ENSKMAG00000015642	cpsf4	100	82.288	ENSGAGG00000021835	CPSF4	100	82.288	Gopherus_agassizii
ENSKMAG00000015642	cpsf4	69	75.275	ENSGAGG00000020579	-	100	75.275	Gopherus_agassizii
ENSKMAG00000015642	cpsf4	100	81.852	ENSGGOG00000015131	CPSF4	100	81.852	Gorilla_gorilla
ENSKMAG00000015642	cpsf4	100	89.811	ENSHBUG00000013699	cpsf4	100	89.811	Haplochromis_burtoni
ENSKMAG00000015642	cpsf4	100	81.550	ENSHGLG00000017150	CPSF4	100	81.550	Heterocephalus_glaber_female
ENSKMAG00000015642	cpsf4	87	79.237	ENSHGLG00100009215	-	100	79.237	Heterocephalus_glaber_male
ENSKMAG00000015642	cpsf4	72	62.632	ENSHGLG00100017302	-	89	62.632	Heterocephalus_glaber_male
ENSKMAG00000015642	cpsf4	100	85.714	ENSHCOG00000004397	cpsf4	100	85.714	Hippocampus_comes
ENSKMAG00000015642	cpsf4	100	80.443	ENSIPUG00000017147	cpsf4	100	81.919	Ictalurus_punctatus
ENSKMAG00000015642	cpsf4	100	82.222	ENSSTOG00000001688	CPSF4	100	82.222	Ictidomys_tridecemlineatus
ENSKMAG00000015642	cpsf4	100	81.852	ENSJJAG00000019426	Cpsf4	100	81.852	Jaculus_jaculus
ENSKMAG00000015642	cpsf4	100	59.774	ENSLACG00000018470	-	100	59.774	Latimeria_chalumnae
ENSKMAG00000015642	cpsf4	100	83.395	ENSLACG00000010938	CPSF4	100	83.395	Latimeria_chalumnae
ENSKMAG00000015642	cpsf4	100	80.669	ENSLOCG00000004814	cpsf4	100	80.669	Lepisosteus_oculatus
ENSKMAG00000015642	cpsf4	100	81.852	ENSLAFG00000000159	CPSF4	100	81.852	Loxodonta_africana
ENSKMAG00000015642	cpsf4	100	81.852	ENSMFAG00000001462	CPSF4	100	81.852	Macaca_fascicularis
ENSKMAG00000015642	cpsf4	100	81.852	ENSMMUG00000019191	CPSF4	100	81.852	Macaca_mulatta
ENSKMAG00000015642	cpsf4	100	81.852	ENSMNEG00000032306	CPSF4	100	81.852	Macaca_nemestrina
ENSKMAG00000015642	cpsf4	100	81.852	ENSMLEG00000034721	CPSF4	100	81.852	Mandrillus_leucophaeus
ENSKMAG00000015642	cpsf4	100	88.722	ENSMAMG00000006244	cpsf4	100	88.722	Mastacembelus_armatus
ENSKMAG00000015642	cpsf4	100	89.811	ENSMZEG00005007515	cpsf4	100	89.811	Maylandia_zebra
ENSKMAG00000015642	cpsf4	87	77.056	ENSMGAG00000004235	CPSF4	100	77.056	Meleagris_gallopavo
ENSKMAG00000015642	cpsf4	100	82.222	ENSMAUG00000021253	Cpsf4	100	82.222	Mesocricetus_auratus
ENSKMAG00000015642	cpsf4	100	81.852	ENSMICG00000017429	CPSF4	100	81.852	Microcebus_murinus
ENSKMAG00000015642	cpsf4	100	82.222	ENSMOCG00000014901	Cpsf4	100	82.222	Microtus_ochrogaster
ENSKMAG00000015642	cpsf4	100	88.722	ENSMMOG00000001813	cpsf4	100	88.722	Mola_mola
ENSKMAG00000015642	cpsf4	100	82.963	ENSMODG00000001367	CPSF4	100	82.963	Monodelphis_domestica
ENSKMAG00000015642	cpsf4	100	89.474	ENSMALG00000012611	cpsf4	100	89.474	Monopterus_albus
ENSKMAG00000015642	cpsf4	100	82.222	MGP_CAROLIEiJ_G0028012	Cpsf4	100	82.222	Mus_caroli
ENSKMAG00000015642	cpsf4	100	82.222	ENSMUSG00000029625	Cpsf4	100	82.222	Mus_musculus
ENSKMAG00000015642	cpsf4	100	82.222	MGP_PahariEiJ_G0024581	Cpsf4	100	82.222	Mus_pahari
ENSKMAG00000015642	cpsf4	100	81.852	MGP_SPRETEiJ_G0029013	Cpsf4	100	81.852	Mus_spretus
ENSKMAG00000015642	cpsf4	100	82.222	ENSMPUG00000016508	CPSF4	100	82.222	Mustela_putorius_furo
ENSKMAG00000015642	cpsf4	87	77.489	ENSMLUG00000010980	CPSF4	100	77.489	Myotis_lucifugus
ENSKMAG00000015642	cpsf4	100	82.222	ENSNGAG00000001567	Cpsf4	100	82.222	Nannospalax_galili
ENSKMAG00000015642	cpsf4	91	88.797	ENSNBRG00000003943	cpsf4	98	88.797	Neolamprologus_brichardi
ENSKMAG00000015642	cpsf4	100	79.851	ENSNLEG00000011074	CPSF4	100	79.775	Nomascus_leucogenys
ENSKMAG00000015642	cpsf4	100	82.963	ENSMEUG00000006955	CPSF4	100	82.963	Notamacropus_eugenii
ENSKMAG00000015642	cpsf4	100	81.481	ENSOPRG00000013663	CPSF4	100	81.481	Ochotona_princeps
ENSKMAG00000015642	cpsf4	100	82.222	ENSODEG00000011181	-	100	82.222	Octodon_degus
ENSKMAG00000015642	cpsf4	100	63.100	ENSODEG00000009779	-	100	63.100	Octodon_degus
ENSKMAG00000015642	cpsf4	98	67.050	ENSODEG00000018283	-	91	67.816	Octodon_degus
ENSKMAG00000015642	cpsf4	100	89.811	ENSONIG00000008495	cpsf4	100	89.811	Oreochromis_niloticus
ENSKMAG00000015642	cpsf4	87	81.277	ENSOANG00000007729	CPSF4	100	81.277	Ornithorhynchus_anatinus
ENSKMAG00000015642	cpsf4	100	53.025	ENSOANG00000009568	-	100	53.025	Ornithorhynchus_anatinus
ENSKMAG00000015642	cpsf4	100	81.481	ENSOCUG00000002437	CPSF4	70	81.481	Oryctolagus_cuniculus
ENSKMAG00000015642	cpsf4	100	91.321	ENSORLG00000022798	cpsf4	100	91.321	Oryzias_latipes
ENSKMAG00000015642	cpsf4	100	91.321	ENSORLG00020008548	cpsf4	100	91.321	Oryzias_latipes_hni
ENSKMAG00000015642	cpsf4	100	90.943	ENSORLG00015019575	cpsf4	100	90.943	Oryzias_latipes_hsok
ENSKMAG00000015642	cpsf4	100	90.943	ENSOMEG00000005176	cpsf4	100	90.943	Oryzias_melastigma
ENSKMAG00000015642	cpsf4	100	81.852	ENSOGAG00000010884	CPSF4	100	81.852	Otolemur_garnettii
ENSKMAG00000015642	cpsf4	100	71.168	ENSOARG00000018668	CPSF4	100	71.168	Ovis_aries
ENSKMAG00000015642	cpsf4	100	81.852	ENSPPAG00000043355	CPSF4	100	81.852	Pan_paniscus
ENSKMAG00000015642	cpsf4	100	82.222	ENSPPRG00000003134	CPSF4	100	82.222	Panthera_pardus
ENSKMAG00000015642	cpsf4	90	81.893	ENSPTIG00000005604	CPSF4	90	81.893	Panthera_tigris_altaica
ENSKMAG00000015642	cpsf4	100	81.852	ENSPTRG00000019453	CPSF4	100	81.852	Pan_troglodytes
ENSKMAG00000015642	cpsf4	100	81.852	ENSPANG00000023123	CPSF4	100	81.852	Papio_anubis
ENSKMAG00000015642	cpsf4	100	81.752	ENSPKIG00000014278	cpsf4	100	81.752	Paramormyrops_kingsleyae
ENSKMAG00000015642	cpsf4	80	81.651	ENSPSIG00000011229	CPSF4	100	81.651	Pelodiscus_sinensis
ENSKMAG00000015642	cpsf4	81	57.944	ENSPSIG00000018198	-	100	57.944	Pelodiscus_sinensis
ENSKMAG00000015642	cpsf4	100	77.358	ENSPMGG00000017735	cpsf4	100	77.358	Periophthalmus_magnuspinnatus
ENSKMAG00000015642	cpsf4	100	82.222	ENSPEMG00000004508	Cpsf4	100	82.222	Peromyscus_maniculatus_bairdii
ENSKMAG00000015642	cpsf4	100	82.963	ENSPCIG00000024776	CPSF4	100	82.963	Phascolarctos_cinereus
ENSKMAG00000015642	cpsf4	100	90.566	ENSPFOG00000014912	cpsf4	100	90.566	Poecilia_formosa
ENSKMAG00000015642	cpsf4	100	82.642	ENSPLAG00000009599	cpsf4	100	82.642	Poecilia_latipinna
ENSKMAG00000015642	cpsf4	100	90.566	ENSPMEG00000009790	cpsf4	100	90.566	Poecilia_mexicana
ENSKMAG00000015642	cpsf4	100	89.811	ENSPREG00000018166	cpsf4	100	89.811	Poecilia_reticulata
ENSKMAG00000015642	cpsf4	87	80.851	ENSPPYG00000017378	CPSF4	100	80.851	Pongo_abelii
ENSKMAG00000015642	cpsf4	100	81.852	ENSPCAG00000001892	CPSF4	100	81.852	Procavia_capensis
ENSKMAG00000015642	cpsf4	100	82.222	ENSPCOG00000012771	CPSF4	100	82.222	Propithecus_coquereli
ENSKMAG00000015642	cpsf4	100	77.778	ENSPVAG00000007531	CPSF4	100	77.778	Pteropus_vampyrus
ENSKMAG00000015642	cpsf4	100	89.811	ENSPNYG00000018559	cpsf4	100	89.811	Pundamilia_nyererei
ENSKMAG00000015642	cpsf4	100	82.963	ENSPNAG00000003736	cpsf4	100	81.884	Pygocentrus_nattereri
ENSKMAG00000015642	cpsf4	100	79.245	ENSRNOG00000000985	Cpsf4	100	79.245	Rattus_norvegicus
ENSKMAG00000015642	cpsf4	87	81.277	ENSRBIG00000033886	CPSF4	100	81.277	Rhinopithecus_bieti
ENSKMAG00000015642	cpsf4	100	78.113	ENSRROG00000040431	CPSF4	100	78.113	Rhinopithecus_roxellana
ENSKMAG00000015642	cpsf4	100	81.852	ENSSBOG00000020493	CPSF4	100	81.852	Saimiri_boliviensis_boliviensis
ENSKMAG00000015642	cpsf4	100	82.963	ENSSHAG00000011533	CPSF4	100	82.963	Sarcophilus_harrisii
ENSKMAG00000015642	cpsf4	100	80.797	ENSSFOG00015007883	cpsf4	100	80.797	Scleropages_formosus
ENSKMAG00000015642	cpsf4	100	82.707	ENSSMAG00000006374	cpsf4	100	82.707	Scophthalmus_maximus
ENSKMAG00000015642	cpsf4	100	92.105	ENSSDUG00000018887	cpsf4	100	92.105	Seriola_dumerili
ENSKMAG00000015642	cpsf4	100	91.729	ENSSLDG00000019078	cpsf4	100	91.729	Seriola_lalandi_dorsalis
ENSKMAG00000015642	cpsf4	87	81.277	ENSSARG00000012416	CPSF4	100	81.277	Sorex_araneus
ENSKMAG00000015642	cpsf4	100	80.741	ENSSPUG00000003549	CPSF4	100	80.741	Sphenodon_punctatus
ENSKMAG00000015642	cpsf4	96	57.480	ENSSPUG00000014803	-	97	57.480	Sphenodon_punctatus
ENSKMAG00000015642	cpsf4	100	83.774	ENSSPAG00000006174	cpsf4	100	83.774	Stegastes_partitus
ENSKMAG00000015642	cpsf4	100	78.113	ENSSSCG00000026896	CPSF4	100	78.113	Sus_scrofa
ENSKMAG00000015642	cpsf4	100	77.154	ENSTGUG00000007552	CPSF4	100	77.154	Taeniopygia_guttata
ENSKMAG00000015642	cpsf4	100	86.415	ENSTRUG00000024220	cpsf4	100	86.415	Takifugu_rubripes
ENSKMAG00000015642	cpsf4	100	86.038	ENSTNIG00000006265	cpsf4	100	86.038	Tetraodon_nigroviridis
ENSKMAG00000015642	cpsf4	87	72.340	ENSTBEG00000011406	CPSF4	100	72.340	Tupaia_belangeri
ENSKMAG00000015642	cpsf4	100	68.030	ENSTTRG00000003007	CPSF4	100	70.632	Tursiops_truncatus
ENSKMAG00000015642	cpsf4	92	77.778	ENSUAMG00000008051	CPSF4	85	77.778	Ursus_americanus
ENSKMAG00000015642	cpsf4	100	79.245	ENSUMAG00000009474	CPSF4	100	79.245	Ursus_maritimus
ENSKMAG00000015642	cpsf4	100	78.491	ENSVVUG00000008824	CPSF4	100	78.491	Vulpes_vulpes
ENSKMAG00000015642	cpsf4	99	59.701	ENSXETG00000004641	cpsf4l	99	59.701	Xenopus_tropicalis
ENSKMAG00000015642	cpsf4	100	76.703	ENSXETG00000009892	cpsf4	100	76.703	Xenopus_tropicalis
ENSKMAG00000015642	cpsf4	100	90.943	ENSXCOG00000016040	cpsf4	100	90.943	Xiphophorus_couchianus
ENSKMAG00000015642	cpsf4	100	90.566	ENSXMAG00000024670	cpsf4	100	90.566	Xiphophorus_maculatus