EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000016343 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 11165 bases
Position: chrLWHD01000461.1:37788-48952
Accession: 108249524
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000022045	RNA_pol_Rpb1_5	PF04998.17	7.3e-98	1	1
ENSKMAP00000022045	RNA_pol_Rpb1_4	PF05000.17	2.3e-35	1	1
ENSKMAP00000022045	RNA_pol_Rpb1_2	PF00623.20	3.7e-70	1	1
ENSKMAP00000022045	RNA_pol_Rpb1_3	PF04983.18	3.7e-46	1	1
ENSKMAP00000022045	RNA_pol_Rpb1_1	PF04997.12	4e-107	1	1
ENSKMAP00000022045	RNA_pol_Rpb1_7	PF04990.12	1.7e-15	1	1
ENSKMAP00000022045	RNA_pol_Rpb1_6	PF04992.14	3e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000022331	-	5334	XM_025002195	ENSKMAP00000022045	1777 (aa)	XP_024857963	-

Gene Model

Click here to download ENSKMAG00000016343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000016343's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000016343	polr2a	73	36.481	ENSKMAG00000015290	polr3a	96	36.884
ENSKMAG00000016343	polr2a	73	30.000	ENSKMAG00000007399	polr1a	83	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000016343	polr2a	85	77.964	ENSAPOG00000006552	polr2a	80	88.609	Acanthochromis_polyacanthus
ENSKMAG00000016343	polr2a	86	89.286	ENSAMEG00000016265	-	80	85.006	Ailuropoda_melanoleuca
ENSKMAG00000016343	polr2a	86	100.000	ENSACIG00000015982	polr2a	81	100.000	Amphilophus_citrinellus
ENSKMAG00000016343	polr2a	86	100.000	ENSAOCG00000004255	polr2a	84	100.000	Amphiprion_ocellaris
ENSKMAG00000016343	polr2a	86	100.000	ENSAPEG00000012623	polr2a	82	100.000	Amphiprion_percula
ENSKMAG00000016343	polr2a	86	100.000	ENSATEG00000019644	polr2a	82	100.000	Anabas_testudineus
ENSKMAG00000016343	polr2a	86	89.286	ENSACAG00000014561	POLR2A	80	85.346	Anolis_carolinensis
ENSKMAG00000016343	polr2a	85	85.418	ENSANAG00000020093	-	80	85.355	Aotus_nancymaae
ENSKMAG00000016343	polr2a	86	100.000	ENSACLG00000006735	polr2a	82	100.000	Astatotilapia_calliptera
ENSKMAG00000016343	polr2a	86	100.000	ENSAMXG00000020046	polr2a	82	100.000	Astyanax_mexicanus
ENSKMAG00000016343	polr2a	85	85.607	ENSBTAG00000046765	POLR2A	80	85.355	Bos_taurus
ENSKMAG00000016343	polr2a	84	63.516	WBGene00000123	ama-1	84	63.579	Caenorhabditis_elegans
ENSKMAG00000016343	polr2a	85	85.544	ENSCAFG00000016532	POLR2A	89	85.355	Canis_familiaris
ENSKMAG00000016343	polr2a	85	84.789	ENSCAFG00020007929	-	80	84.412	Canis_lupus_dingo
ENSKMAG00000016343	polr2a	85	85.607	ENSCHIG00000027173	-	80	85.355	Capra_hircus
ENSKMAG00000016343	polr2a	85	83.575	ENSTSYG00000012803	-	83	83.490	Carlito_syrichta
ENSKMAG00000016343	polr2a	84	89.286	ENSCAPG00000001882	-	86	85.055	Cavia_aperea
ENSKMAG00000016343	polr2a	86	89.286	ENSCPOG00000014812	-	86	85.110	Cavia_porcellus
ENSKMAG00000016343	polr2a	85	85.418	ENSCCAG00000020938	-	80	85.355	Cebus_capucinus
ENSKMAG00000016343	polr2a	85	85.607	ENSCATG00000013680	-	80	85.355	Cercocebus_atys
ENSKMAG00000016343	polr2a	85	85.481	ENSCLAG00000012196	-	80	85.229	Chinchilla_lanigera
ENSKMAG00000016343	polr2a	84	91.793	ENSCSAG00000011644	-	76	91.793	Chlorocebus_sabaeus
ENSKMAG00000016343	polr2a	85	83.610	ENSCPBG00000012697	POLR2A	99	76.791	Chrysemys_picta_bellii
ENSKMAG00000016343	polr2a	84	75.145	ENSCING00000007884	-	84	75.312	Ciona_intestinalis
ENSKMAG00000016343	polr2a	83	74.607	ENSCSAVG00000008334	-	90	73.827	Ciona_savignyi
ENSKMAG00000016343	polr2a	85	84.915	ENSCANG00000010622	-	81	84.174	Colobus_angolensis_palliatus
ENSKMAG00000016343	polr2a	84	80.301	ENSCGRG00001003538	Polr2a	85	77.771	Cricetulus_griseus_chok1gshd
ENSKMAG00000016343	polr2a	85	82.898	ENSCGRG00000012105	Polr2a	85	82.550	Cricetulus_griseus_crigri
ENSKMAG00000016343	polr2a	86	100.000	ENSCSEG00000002635	polr2a	82	100.000	Cynoglossus_semilaevis
ENSKMAG00000016343	polr2a	86	100.000	ENSCVAG00000005156	polr2a	82	100.000	Cyprinodon_variegatus
ENSKMAG00000016343	polr2a	86	100.000	ENSDARG00000099966	polr2a	82	100.000	Danio_rerio
ENSKMAG00000016343	polr2a	85	82.327	ENSDNOG00000016482	-	80	82.138	Dasypus_novemcinctus
ENSKMAG00000016343	polr2a	86	89.286	ENSDORG00000008667	Polr2a	80	85.355	Dipodomys_ordii
ENSKMAG00000016343	polr2a	83	75.042	FBgn0003277	RpII215	81	74.126	Drosophila_melanogaster
ENSKMAG00000016343	polr2a	77	91.429	ENSETEG00000002540	-	73	91.429	Echinops_telfairi
ENSKMAG00000016343	polr2a	85	85.510	ENSEBUG00000013967	polr2a	78	85.510	Eptatretus_burgeri
ENSKMAG00000016343	polr2a	85	83.648	ENSEASG00005019114	-	81	83.396	Equus_asinus_asinus
ENSKMAG00000016343	polr2a	85	85.607	ENSECAG00000018485	POLR2A	80	85.355	Equus_caballus
ENSKMAG00000016343	polr2a	80	85.296	ENSEEUG00000001154	-	92	85.296	Erinaceus_europaeus
ENSKMAG00000016343	polr2a	85	93.025	ENSELUG00000014284	polr2a	79	93.025	Esox_lucius
ENSKMAG00000016343	polr2a	86	89.286	ENSFDAG00000008287	-	80	85.292	Fukomys_damarensis
ENSKMAG00000016343	polr2a	85	78.026	ENSFHEG00000001768	polr2a	83	77.902	Fundulus_heteroclitus
ENSKMAG00000016343	polr2a	85	95.977	ENSGMOG00000007725	polr2a	92	95.977	Gadus_morhua
ENSKMAG00000016343	polr2a	86	100.000	ENSGAFG00000005389	polr2a	89	100.000	Gambusia_affinis
ENSKMAG00000016343	polr2a	85	95.402	ENSGACG00000019366	polr2a	96	95.402	Gasterosteus_aculeatus
ENSKMAG00000016343	polr2a	85	83.626	ENSGGOG00000014800	-	96	91.599	Gorilla_gorilla
ENSKMAG00000016343	polr2a	85	86.200	ENSHBUG00000018937	polr2a	83	77.037	Haplochromis_burtoni
ENSKMAG00000016343	polr2a	85	85.355	ENSHGLG00000012381	POLR2A	80	85.292	Heterocephalus_glaber_female
ENSKMAG00000016343	polr2a	85	85.355	ENSHGLG00100014843	POLR2A	80	85.292	Heterocephalus_glaber_male
ENSKMAG00000016343	polr2a	86	96.154	ENSHCOG00000011874	polr2a	82	96.154	Hippocampus_comes
ENSKMAG00000016343	polr2a	86	100.000	ENSIPUG00000002613	Polr2a	82	100.000	Ictalurus_punctatus
ENSKMAG00000016343	polr2a	85	85.418	ENSSTOG00000001304	-	80	85.355	Ictidomys_tridecemlineatus
ENSKMAG00000016343	polr2a	86	89.286	ENSJJAG00000013049	Polr2a	80	85.355	Jaculus_jaculus
ENSKMAG00000016343	polr2a	86	100.000	ENSLBEG00000027652	polr2a	82	100.000	Labrus_bergylta
ENSKMAG00000016343	polr2a	83	76.474	ENSLACG00000012071	POLR2A	80	76.139	Latimeria_chalumnae
ENSKMAG00000016343	polr2a	85	87.791	ENSLOCG00000013863	polr2a	84	87.288	Lepisosteus_oculatus
ENSKMAG00000016343	polr2a	85	85.418	ENSLAFG00000008626	-	84	85.355	Loxodonta_africana
ENSKMAG00000016343	polr2a	55	91.582	ENSMFAG00000007042	-	100	91.582	Macaca_fascicularis
ENSKMAG00000016343	polr2a	85	85.607	ENSMMUG00000023620	-	81	85.481	Macaca_mulatta
ENSKMAG00000016343	polr2a	85	84.789	ENSMNEG00000040407	-	80	94.253	Macaca_nemestrina
ENSKMAG00000016343	polr2a	83	94.253	ENSMLEG00000030263	-	100	91.582	Mandrillus_leucophaeus
ENSKMAG00000016343	polr2a	86	100.000	ENSMAMG00000003351	polr2a	82	100.000	Mastacembelus_armatus
ENSKMAG00000016343	polr2a	86	100.000	ENSMZEG00005021429	polr2a	82	100.000	Maylandia_zebra
ENSKMAG00000016343	polr2a	55	92.690	ENSMAUG00000021055	-	99	92.690	Mesocricetus_auratus
ENSKMAG00000016343	polr2a	85	85.418	ENSMICG00000013372	-	99	91.886	Microcebus_murinus
ENSKMAG00000016343	polr2a	85	84.591	ENSMOCG00000018279	Polr2a	78	84.591	Microtus_ochrogaster
ENSKMAG00000016343	polr2a	85	78.150	ENSMMOG00000012515	polr2a	81	76.804	Mola_mola
ENSKMAG00000016343	polr2a	85	85.355	ENSMODG00000007009	-	80	84.978	Monodelphis_domestica
ENSKMAG00000016343	polr2a	86	96.154	ENSMALG00000008716	polr2a	86	96.154	Monopterus_albus
ENSKMAG00000016343	polr2a	85	85.418	MGP_CAROLIEiJ_G0016587	Polr2a	80	85.355	Mus_caroli
ENSKMAG00000016343	polr2a	85	85.418	ENSMUSG00000005198	Polr2a	80	85.355	Mus_musculus
ENSKMAG00000016343	polr2a	85	83.982	MGP_PahariEiJ_G0017718	Polr2a	80	86.432	Mus_pahari
ENSKMAG00000016343	polr2a	85	85.418	MGP_SPRETEiJ_G0017423	Polr2a	80	85.355	Mus_spretus
ENSKMAG00000016343	polr2a	86	89.286	ENSMPUG00000009648	-	80	85.355	Mustela_putorius_furo
ENSKMAG00000016343	polr2a	86	89.286	ENSMLUG00000009088	-	80	84.799	Myotis_lucifugus
ENSKMAG00000016343	polr2a	85	85.418	ENSNGAG00000002543	Polr2a	80	85.355	Nannospalax_galili
ENSKMAG00000016343	polr2a	86	100.000	ENSNBRG00000002005	polr2a	81	100.000	Neolamprologus_brichardi
ENSKMAG00000016343	polr2a	85	84.253	ENSNLEG00000009460	-	80	84.003	Nomascus_leucogenys
ENSKMAG00000016343	polr2a	78	94.028	ENSMEUG00000008611	-	88	94.028	Notamacropus_eugenii
ENSKMAG00000016343	polr2a	85	85.183	ENSOPRG00000015116	-	99	73.048	Ochotona_princeps
ENSKMAG00000016343	polr2a	83	89.286	ENSODEG00000017674	-	84	81.320	Octodon_degus
ENSKMAG00000016343	polr2a	86	100.000	ENSONIG00000009231	polr2a	82	100.000	Oreochromis_niloticus
ENSKMAG00000016343	polr2a	52	92.513	ENSOANG00000003303	-	98	92.513	Ornithorhynchus_anatinus
ENSKMAG00000016343	polr2a	86	89.286	ENSOCUG00000017929	-	80	85.418	Oryctolagus_cuniculus
ENSKMAG00000016343	polr2a	86	100.000	ENSORLG00000006431	polr2a	82	100.000	Oryzias_latipes
ENSKMAG00000016343	polr2a	86	100.000	ENSORLG00020010235	polr2a	82	100.000	Oryzias_latipes_hni
ENSKMAG00000016343	polr2a	86	100.000	ENSORLG00015007075	polr2a	82	100.000	Oryzias_latipes_hsok
ENSKMAG00000016343	polr2a	85	97.283	ENSOMEG00000010713	polr2a	92	97.283	Oryzias_melastigma
ENSKMAG00000016343	polr2a	86	89.286	ENSOGAG00000033608	-	80	85.229	Otolemur_garnettii
ENSKMAG00000016343	polr2a	85	85.607	ENSOARG00000013874	-	84	85.355	Ovis_aries
ENSKMAG00000016343	polr2a	85	84.852	ENSPPAG00000043734	-	81	83.512	Pan_paniscus
ENSKMAG00000016343	polr2a	85	84.253	ENSPTRG00000008691	POLR2A	80	84.003	Pan_troglodytes
ENSKMAG00000016343	polr2a	85	84.915	ENSPANG00000024099	-	80	84.664	Papio_anubis
ENSKMAG00000016343	polr2a	85	91.382	ENSPKIG00000005727	polr2a	81	91.382	Paramormyrops_kingsleyae
ENSKMAG00000016343	polr2a	85	73.894	ENSPSIG00000014006	POLR2A	96	73.894	Pelodiscus_sinensis
ENSKMAG00000016343	polr2a	86	100.000	ENSPMGG00000019734	polr2a	97	100.000	Periophthalmus_magnuspinnatus
ENSKMAG00000016343	polr2a	85	85.418	ENSPEMG00000012521	Polr2a	80	85.355	Peromyscus_maniculatus_bairdii
ENSKMAG00000016343	polr2a	85	85.104	ENSPCIG00000028851	-	81	72.772	Phascolarctos_cinereus
ENSKMAG00000016343	polr2a	86	92.308	ENSPFOG00000007890	polr2a	84	92.308	Poecilia_formosa
ENSKMAG00000016343	polr2a	86	92.308	ENSPLAG00000007399	polr2a	84	92.308	Poecilia_latipinna
ENSKMAG00000016343	polr2a	86	92.308	ENSPMEG00000002071	polr2a	84	92.308	Poecilia_mexicana
ENSKMAG00000016343	polr2a	86	100.000	ENSPREG00000013122	polr2a	82	100.000	Poecilia_reticulata
ENSKMAG00000016343	polr2a	86	89.286	ENSPPYG00000007924	-	81	85.229	Pongo_abelii
ENSKMAG00000016343	polr2a	77	94.253	ENSPCAG00000006951	-	72	94.253	Procavia_capensis
ENSKMAG00000016343	polr2a	85	84.184	ENSPCOG00000025260	-	81	83.998	Propithecus_coquereli
ENSKMAG00000016343	polr2a	86	89.286	ENSPVAG00000005069	-	80	93.678	Pteropus_vampyrus
ENSKMAG00000016343	polr2a	86	100.000	ENSPNYG00000022340	polr2a	83	100.000	Pundamilia_nyererei
ENSKMAG00000016343	polr2a	86	100.000	ENSPNAG00000011237	polr2a	82	100.000	Pygocentrus_nattereri
ENSKMAG00000016343	polr2a	85	85.544	ENSRNOG00000028834	Polr2a	80	85.292	Rattus_norvegicus
ENSKMAG00000016343	polr2a	85	85.346	ENSRBIG00000002471	-	82	85.220	Rhinopithecus_bieti
ENSKMAG00000016343	polr2a	85	85.607	ENSRROG00000029583	-	81	85.355	Rhinopithecus_roxellana
ENSKMAG00000016343	polr2a	84	47.676	YDL140C	RPO21	93	46.748	Saccharomyces_cerevisiae
ENSKMAG00000016343	polr2a	85	85.418	ENSSBOG00000000808	-	80	85.355	Saimiri_boliviensis_boliviensis
ENSKMAG00000016343	polr2a	86	89.286	ENSSHAG00000002858	-	83	85.104	Sarcophilus_harrisii
ENSKMAG00000016343	polr2a	85	85.318	ENSSFOG00015023275	polr2a	80	87.602	Scleropages_formosus
ENSKMAG00000016343	polr2a	86	100.000	ENSSMAG00000009137	polr2a	82	100.000	Scophthalmus_maximus
ENSKMAG00000016343	polr2a	86	100.000	ENSSDUG00000020466	polr2a	82	100.000	Seriola_dumerili
ENSKMAG00000016343	polr2a	86	100.000	ENSSLDG00000020613	polr2a	82	100.000	Seriola_lalandi_dorsalis
ENSKMAG00000016343	polr2a	85	72.022	ENSSARG00000005875	-	95	72.022	Sorex_araneus
ENSKMAG00000016343	polr2a	86	100.000	ENSSPAG00000016741	polr2a	82	100.000	Stegastes_partitus
ENSKMAG00000016343	polr2a	85	84.475	ENSSSCG00000028278	-	80	84.287	Sus_scrofa
ENSKMAG00000016343	polr2a	85	97.088	ENSTRUG00000012320	polr2a	79	97.088	Takifugu_rubripes
ENSKMAG00000016343	polr2a	85	76.813	ENSTNIG00000010136	polr2a	91	76.427	Tetraodon_nigroviridis
ENSKMAG00000016343	polr2a	86	89.286	ENSTTRG00000014273	-	80	94.253	Tursiops_truncatus
ENSKMAG00000016343	polr2a	86	89.286	ENSUAMG00000014866	-	88	82.598	Ursus_americanus
ENSKMAG00000016343	polr2a	77	87.500	ENSUMAG00000015732	-	82	87.500	Ursus_maritimus
ENSKMAG00000016343	polr2a	85	85.544	ENSVVUG00000027878	-	82	85.292	Vulpes_vulpes
ENSKMAG00000016343	polr2a	84	84.576	ENSXETG00000012465	polr2a	80	84.385	Xenopus_tropicalis
ENSKMAG00000016343	polr2a	86	100.000	ENSXCOG00000001804	polr2a	88	100.000	Xiphophorus_couchianus
ENSKMAG00000016343	polr2a	86	100.000	ENSXMAG00000015687	polr2a	82	100.000	Xiphophorus_maculatus