EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000016356 (Gene tree)
Gene ID: 108231543
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 4052 bases
Position: chrLWHD01000012.1:4833393-4837444
Accession: 108231543
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000022000	zf-U1	PF06220.12	1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000022285	-	906	XM_017408627	ENSKMAP00000022000	148 (aa)	XP_017264116	UPI00079EDE67

Gene Model

Click here to download ENSKMAG00000016356's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000016356's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000016356	snrpc	100	98.649	ENSAPOG00000013907	snrpc	100	98.649	Acanthochromis_polyacanthus
ENSKMAG00000016356	snrpc	100	98.649	ENSAOCG00000021151	snrpc	100	98.649	Amphiprion_ocellaris
ENSKMAG00000016356	snrpc	100	98.649	ENSAPEG00000023221	snrpc	100	98.649	Amphiprion_percula
ENSKMAG00000016356	snrpc	100	98.649	ENSATEG00000025133	snrpc	100	98.649	Anabas_testudineus
ENSKMAG00000016356	snrpc	100	97.987	ENSACLG00000000843	snrpc	100	97.987	Astatotilapia_calliptera
ENSKMAG00000016356	snrpc	100	81.875	ENSAMXG00000032641	snrpc	100	73.826	Astyanax_mexicanus
ENSKMAG00000016356	snrpc	100	91.946	ENSCSEG00000016845	snrpc	100	93.960	Cynoglossus_semilaevis
ENSKMAG00000016356	snrpc	100	99.324	ENSCVAG00000014297	snrpc	100	99.324	Cyprinodon_variegatus
ENSKMAG00000016356	snrpc	74	100.000	ENSFHEG00000016667	snrpc	97	100.000	Fundulus_heteroclitus
ENSKMAG00000016356	snrpc	99	95.890	ENSGMOG00000000090	snrpc	100	95.890	Gadus_morhua
ENSKMAG00000016356	snrpc	100	98.649	ENSGAFG00000016115	snrpc	100	98.649	Gambusia_affinis
ENSKMAG00000016356	snrpc	99	97.945	ENSGACG00000004899	snrpc	98	97.945	Gasterosteus_aculeatus
ENSKMAG00000016356	snrpc	100	97.987	ENSHBUG00000011637	snrpc	100	97.987	Haplochromis_burtoni
ENSKMAG00000016356	snrpc	100	91.216	ENSHCOG00000001596	snrpc	100	85.135	Hippocampus_comes
ENSKMAG00000016356	snrpc	100	97.987	ENSLBEG00000023881	snrpc	100	97.987	Labrus_bergylta
ENSKMAG00000016356	snrpc	97	59.589	ENSMLEG00000039724	-	81	54.861	Mandrillus_leucophaeus
ENSKMAG00000016356	snrpc	100	98.649	ENSMAMG00000003857	snrpc	100	98.649	Mastacembelus_armatus
ENSKMAG00000016356	snrpc	100	97.987	ENSMZEG00005002199	snrpc	100	97.987	Maylandia_zebra
ENSKMAG00000016356	snrpc	98	97.931	ENSMMOG00000013149	snrpc	100	97.931	Mola_mola
ENSKMAG00000016356	snrpc	100	96.622	ENSMALG00000001197	snrpc	100	96.622	Monopterus_albus
ENSKMAG00000016356	snrpc	100	97.987	ENSONIG00000014757	snrpc	100	97.987	Oreochromis_niloticus
ENSKMAG00000016356	snrpc	96	97.887	ENSORLG00000007308	snrpc	97	97.887	Oryzias_latipes
ENSKMAG00000016356	snrpc	96	97.203	ENSORLG00020012607	SNRPC	97	97.203	Oryzias_latipes_hni
ENSKMAG00000016356	snrpc	100	95.973	ENSOMEG00000012014	snrpc	86	95.973	Oryzias_melastigma
ENSKMAG00000016356	snrpc	97	64.935	ENSOGAG00000028405	-	67	66.019	Otolemur_garnettii
ENSKMAG00000016356	snrpc	98	95.862	ENSPMGG00000022162	snrpc	100	95.862	Periophthalmus_magnuspinnatus
ENSKMAG00000016356	snrpc	100	98.649	ENSPFOG00000015174	snrpc	100	98.649	Poecilia_formosa
ENSKMAG00000016356	snrpc	100	98.649	ENSPLAG00000012311	snrpc	100	98.649	Poecilia_latipinna
ENSKMAG00000016356	snrpc	100	98.649	ENSPMEG00000010274	snrpc	100	98.649	Poecilia_mexicana
ENSKMAG00000016356	snrpc	99	84.247	ENSPREG00000013017	snrpc	79	84.247	Poecilia_reticulata
ENSKMAG00000016356	snrpc	100	83.648	ENSPNAG00000012799	snrpc	100	82.911	Pygocentrus_nattereri
ENSKMAG00000016356	snrpc	100	98.649	ENSSMAG00000008029	snrpc	100	98.649	Scophthalmus_maximus
ENSKMAG00000016356	snrpc	100	98.649	ENSSDUG00000018895	snrpc	81	98.649	Seriola_dumerili
ENSKMAG00000016356	snrpc	100	98.649	ENSSLDG00000005034	snrpc	100	98.649	Seriola_lalandi_dorsalis
ENSKMAG00000016356	snrpc	100	98.649	ENSSPAG00000000914	snrpc	100	98.649	Stegastes_partitus
ENSKMAG00000016356	snrpc	100	83.108	ENSTRUG00000021651	snrpc	100	91.216	Takifugu_rubripes
ENSKMAG00000016356	snrpc	98	93.793	ENSXCOG00000015871	-	100	78.621	Xiphophorus_couchianus
ENSKMAG00000016356	snrpc	100	98.649	ENSXMAG00000017935	snrpc	100	98.649	Xiphophorus_maculatus