EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000016562 (Gene tree)
Gene ID: 108249525
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 22571 bases
Position: chrLWHD01000461.1:118624-141194
Accession: 108249525
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	1	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	2	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	3	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	4	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	5	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	6	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	7	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	8	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	9	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	10	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	11	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	12	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	13	14
ENSKMAP00000022348	KH_1	PF00013.29	1e-186	14	14
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	1	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	2	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	3	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	4	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	5	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	6	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	7	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	8	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	9	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	10	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	11	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	12	13
ENSKMAP00000022400	KH_1	PF00013.29	4.7e-175	13	13

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000022685	-	3564	-	ENSKMAP00000022400	1187 (aa)	-	-
ENSKMAT00000022633	-	6280	XM_017438967	ENSKMAP00000022348	1268 (aa)	XP_017294456	UPI0007F8D798

Gene Model

Click here to download ENSKMAG00000016562's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000016562's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000016562	hdlbpb	100	71.440	ENSKMAG00000007571	hdlbpa	100	71.440

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000016562	hdlbpb	100	97.082	ENSAPOG00000006904	hdlbpb	100	97.082	Acanthochromis_polyacanthus
ENSKMAG00000016562	hdlbpb	100	90.895	ENSACIG00000016154	hdlbpb	100	90.895	Amphilophus_citrinellus
ENSKMAG00000016562	hdlbpb	100	97.397	ENSAOCG00000004083	hdlbpb	100	97.397	Amphiprion_ocellaris
ENSKMAG00000016562	hdlbpb	100	97.319	ENSAPEG00000012270	hdlbpb	100	97.319	Amphiprion_percula
ENSKMAG00000016562	hdlbpb	100	95.899	ENSATEG00000019877	hdlbpb	100	95.899	Anabas_testudineus
ENSKMAG00000016562	hdlbpb	100	81.940	ENSACAG00000003606	-	100	81.940	Anolis_carolinensis
ENSKMAG00000016562	hdlbpb	100	96.372	ENSACLG00000006618	hdlbpb	100	96.372	Astatotilapia_calliptera
ENSKMAG00000016562	hdlbpb	100	77.498	ENSAMXG00000019946	hdlbpb	100	77.498	Astyanax_mexicanus
ENSKMAG00000016562	hdlbpb	100	95.189	ENSCSEG00000000955	hdlbpb	100	95.357	Cynoglossus_semilaevis
ENSKMAG00000016562	hdlbpb	100	96.688	ENSCVAG00000005345	hdlbpb	100	96.688	Cyprinodon_variegatus
ENSKMAG00000016562	hdlbpb	99	85.399	ENSDARG00000061864	hdlbpb	99	85.399	Danio_rerio
ENSKMAG00000016562	hdlbpb	92	69.658	ENSEBUG00000005304	hdlbpb	94	70.445	Eptatretus_burgeri
ENSKMAG00000016562	hdlbpb	100	66.355	ENSELUG00000019925	hdlbpb	100	78.022	Esox_lucius
ENSKMAG00000016562	hdlbpb	100	83.562	ENSFHEG00000001701	hdlbpb	100	91.798	Fundulus_heteroclitus
ENSKMAG00000016562	hdlbpb	95	86.888	ENSGMOG00000004522	hdlbpb	78	86.888	Gadus_morhua
ENSKMAG00000016562	hdlbpb	100	96.372	ENSGAFG00000005278	hdlbpb	100	96.372	Gambusia_affinis
ENSKMAG00000016562	hdlbpb	99	91.949	ENSGACG00000019361	hdlbpb	100	92.186	Gasterosteus_aculeatus
ENSKMAG00000016562	hdlbpb	100	96.215	ENSHBUG00000018434	hdlbpb	100	96.215	Haplochromis_burtoni
ENSKMAG00000016562	hdlbpb	100	84.882	ENSIPUG00000003291	HDLBP	100	85.266	Ictalurus_punctatus
ENSKMAG00000016562	hdlbpb	100	95.584	ENSLBEG00000027855	hdlbpb	100	95.584	Labrus_bergylta
ENSKMAG00000016562	hdlbpb	100	84.845	ENSLACG00000007661	hdlbpb	90	84.845	Latimeria_chalumnae
ENSKMAG00000016562	hdlbpb	100	82.270	ENSLOCG00000013909	hdlbpb	100	82.270	Lepisosteus_oculatus
ENSKMAG00000016562	hdlbpb	100	96.372	ENSMAMG00000003035	hdlbpb	100	96.372	Mastacembelus_armatus
ENSKMAG00000016562	hdlbpb	100	96.372	ENSMZEG00005021465	hdlbpb	100	96.372	Maylandia_zebra
ENSKMAG00000016562	hdlbpb	100	94.322	ENSMMOG00000012525	hdlbpb	100	94.637	Mola_mola
ENSKMAG00000016562	hdlbpb	100	94.164	ENSMALG00000008938	hdlbpb	100	94.164	Monopterus_albus
ENSKMAG00000016562	hdlbpb	100	96.451	ENSNBRG00000002236	hdlbpb	100	96.451	Neolamprologus_brichardi
ENSKMAG00000016562	hdlbpb	100	96.136	ENSONIG00000009211	hdlbpb	100	96.136	Oreochromis_niloticus
ENSKMAG00000016562	hdlbpb	100	95.426	ENSORLG00000006581	hdlbpb	100	95.426	Oryzias_latipes
ENSKMAG00000016562	hdlbpb	100	95.741	ENSORLG00020010012	hdlbpb	100	95.741	Oryzias_latipes_hni
ENSKMAG00000016562	hdlbpb	100	95.820	ENSORLG00015006863	hdlbpb	100	95.820	Oryzias_latipes_hsok
ENSKMAG00000016562	hdlbpb	100	95.741	ENSOMEG00000011131	hdlbpb	100	95.741	Oryzias_melastigma
ENSKMAG00000016562	hdlbpb	100	88.328	ENSPKIG00000005966	hdlbpb	100	88.328	Paramormyrops_kingsleyae
ENSKMAG00000016562	hdlbpb	86	93.333	ENSPMGG00000019853	hdlbpb	99	93.333	Periophthalmus_magnuspinnatus
ENSKMAG00000016562	hdlbpb	94	74.781	ENSPMAG00000002131	hdlbpb	100	74.781	Petromyzon_marinus
ENSKMAG00000016562	hdlbpb	92	66.096	ENSPMAG00000000249	-	99	65.894	Petromyzon_marinus
ENSKMAG00000016562	hdlbpb	100	95.710	ENSPFOG00000008755	hdlbpb	100	95.710	Poecilia_formosa
ENSKMAG00000016562	hdlbpb	100	96.767	ENSPLAG00000007055	hdlbpb	100	96.767	Poecilia_latipinna
ENSKMAG00000016562	hdlbpb	100	96.688	ENSPMEG00000001952	hdlbpb	100	96.688	Poecilia_mexicana
ENSKMAG00000016562	hdlbpb	100	96.609	ENSPREG00000012848	hdlbpb	100	96.609	Poecilia_reticulata
ENSKMAG00000016562	hdlbpb	100	96.136	ENSPNYG00000022467	hdlbpb	100	96.136	Pundamilia_nyererei
ENSKMAG00000016562	hdlbpb	100	86.987	ENSPNAG00000011104	hdlbpb	100	86.987	Pygocentrus_nattereri
ENSKMAG00000016562	hdlbpb	100	87.461	ENSSFOG00015023199	hdlbpb	100	87.461	Scleropages_formosus
ENSKMAG00000016562	hdlbpb	100	96.293	ENSSMAG00000008790	hdlbpb	100	96.293	Scophthalmus_maximus
ENSKMAG00000016562	hdlbpb	100	97.161	ENSSDUG00000020694	hdlbpb	100	97.161	Seriola_dumerili
ENSKMAG00000016562	hdlbpb	100	96.609	ENSSLDG00000020807	hdlbpb	100	96.609	Seriola_lalandi_dorsalis
ENSKMAG00000016562	hdlbpb	100	82.808	ENSSPUG00000018688	-	100	82.808	Sphenodon_punctatus
ENSKMAG00000016562	hdlbpb	100	97.397	ENSSPAG00000016969	hdlbpb	100	97.397	Stegastes_partitus
ENSKMAG00000016562	hdlbpb	98	92.241	ENSTRUG00000012888	hdlbpb	99	92.162	Takifugu_rubripes
ENSKMAG00000016562	hdlbpb	99	93.579	ENSTNIG00000002555	hdlbpb	100	93.579	Tetraodon_nigroviridis
ENSKMAG00000016562	hdlbpb	100	83.871	ENSXCOG00000001797	hdlbpb	100	83.871	Xiphophorus_couchianus
ENSKMAG00000016562	hdlbpb	100	95.978	ENSXMAG00000015633	hdlbpb	100	95.978	Xiphophorus_maculatus