EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000016608 (Gene tree)
Gene ID: 108229851
Gene Symbol: blm
Alias: -
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 9270 bases
Position: chrLWHD01000007.1:3050324-3059593
Accession: 108229851
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000022385	HRDC	PF00570.23	1.2e-13	1	1
ENSKMAP00000022385	BDHCT	PF08072.11	2.5e-18	1	1
ENSKMAP00000022385	DEAD	PF00270.29	4.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000022670	-	4670	XM_017405548	ENSKMAP00000022385	1384 (aa)	XP_017261037	UPI0007F87188

Gene Model

Click here to download ENSKMAG00000016608's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03440	Homologous recombination	KEGG
kmr03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000016608's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000016608	blm	75	54.194	ENSG00000197299	BLM	89	63.614	Homo_sapiens
ENSKMAG00000016608	blm	100	72.584	ENSAPOG00000017966	blm	100	72.708	Acanthochromis_polyacanthus
ENSKMAG00000016608	blm	56	64.923	ENSAMEG00000013843	BLM	59	61.803	Ailuropoda_melanoleuca
ENSKMAG00000016608	blm	100	73.104	ENSACIG00000023762	blm	100	72.156	Amphilophus_citrinellus
ENSKMAG00000016608	blm	100	74.750	ENSAOCG00000003318	blm	100	75.089	Amphiprion_ocellaris
ENSKMAG00000016608	blm	100	72.969	ENSAPEG00000018105	blm	100	73.301	Amphiprion_percula
ENSKMAG00000016608	blm	99	72.902	ENSATEG00000006421	blm	100	73.115	Anabas_testudineus
ENSKMAG00000016608	blm	57	66.115	ENSACAG00000014275	BLM	55	66.115	Anolis_carolinensis
ENSKMAG00000016608	blm	63	62.791	ENSANAG00000038415	BLM	77	62.791	Aotus_nancymaae
ENSKMAG00000016608	blm	100	73.913	ENSACLG00000020354	blm	100	73.773	Astatotilapia_calliptera
ENSKMAG00000016608	blm	99	56.038	ENSAMXG00000016970	blm	99	57.056	Astyanax_mexicanus
ENSKMAG00000016608	blm	53	37.672	WBGene00001865	him-6	82	36.730	Caenorhabditis_elegans
ENSKMAG00000016608	blm	84	54.322	ENSCJAG00000009803	BLM	67	65.646	Callithrix_jacchus
ENSKMAG00000016608	blm	59	62.143	ENSCAFG00000012385	BLM	55	64.841	Canis_familiaris
ENSKMAG00000016608	blm	56	64.968	ENSCAFG00020016111	BLM	89	67.253	Canis_lupus_dingo
ENSKMAG00000016608	blm	59	62.919	ENSCHIG00000010329	BLM	74	54.147	Capra_hircus
ENSKMAG00000016608	blm	51	72.283	ENSCAPG00000017976	BLM	58	72.283	Cavia_aperea
ENSKMAG00000016608	blm	63	62.994	ENSCPOG00000001761	BLM	66	60.855	Cavia_porcellus
ENSKMAG00000016608	blm	54	69.118	ENSCCAG00000023069	BLM	83	52.526	Cebus_capucinus
ENSKMAG00000016608	blm	63	66.371	ENSCATG00000040609	BLM	75	76.393	Cercocebus_atys
ENSKMAG00000016608	blm	63	66.497	ENSCSAG00000017040	BLM	70	61.599	Chlorocebus_sabaeus
ENSKMAG00000016608	blm	62	53.759	ENSCHOG00000006255	BLM	64	53.759	Choloepus_hoffmanni
ENSKMAG00000016608	blm	80	52.816	ENSCPBG00000025000	BLM	79	64.190	Chrysemys_picta_bellii
ENSKMAG00000016608	blm	59	64.174	ENSCGRG00001024897	Blm	59	64.311	Cricetulus_griseus_chok1gshd
ENSKMAG00000016608	blm	95	67.964	ENSCSEG00000013483	blm	99	67.812	Cynoglossus_semilaevis
ENSKMAG00000016608	blm	76	76.596	ENSCVAG00000017583	blm	99	70.769	Cyprinodon_variegatus
ENSKMAG00000016608	blm	99	57.727	ENSDARG00000077089	blm	100	57.887	Danio_rerio
ENSKMAG00000016608	blm	60	64.076	ENSDNOG00000010159	BLM	58	64.728	Dasypus_novemcinctus
ENSKMAG00000016608	blm	59	63.082	ENSDORG00000011033	Blm	99	55.159	Dipodomys_ordii
ENSKMAG00000016608	blm	51	52.273	ENSETEG00000015019	BLM	50	52.191	Echinops_telfairi
ENSKMAG00000016608	blm	56	57.818	ENSEASG00005006727	BLM	68	55.442	Equus_asinus_asinus
ENSKMAG00000016608	blm	65	59.242	ENSECAG00000011405	BLM	71	57.336	Equus_caballus
ENSKMAG00000016608	blm	80	52.604	ENSEEUG00000001434	BLM	63	60.112	Erinaceus_europaeus
ENSKMAG00000016608	blm	99	58.942	ENSELUG00000019098	blm	99	57.923	Esox_lucius
ENSKMAG00000016608	blm	64	65.223	ENSFCAG00000006087	BLM	60	73.566	Felis_catus
ENSKMAG00000016608	blm	62	61.547	ENSFALG00000010981	BLM	65	63.941	Ficedula_albicollis
ENSKMAG00000016608	blm	54	65.639	ENSFDAG00000012658	BLM	78	58.178	Fukomys_damarensis
ENSKMAG00000016608	blm	100	74.623	ENSFHEG00000002553	blm	100	75.126	Fundulus_heteroclitus
ENSKMAG00000016608	blm	99	58.815	ENSGMOG00000016431	blm	98	70.602	Gadus_morhua
ENSKMAG00000016608	blm	83	50.700	ENSGALG00000008256	BLM	58	63.280	Gallus_gallus
ENSKMAG00000016608	blm	100	75.503	ENSGAFG00000001117	blm	100	77.742	Gambusia_affinis
ENSKMAG00000016608	blm	99	66.829	ENSGACG00000010863	blm	100	89.773	Gasterosteus_aculeatus
ENSKMAG00000016608	blm	65	55.923	ENSGAGG00000005383	BLM	78	64.965	Gopherus_agassizii
ENSKMAG00000016608	blm	100	75.788	ENSHBUG00000015943	blm	100	75.645	Haplochromis_burtoni
ENSKMAG00000016608	blm	63	62.604	ENSHGLG00000013231	BLM	68	62.649	Heterocephalus_glaber_female
ENSKMAG00000016608	blm	75	69.442	ENSHCOG00000011455	blm	100	69.668	Hippocampus_comes
ENSKMAG00000016608	blm	75	63.828	ENSIPUG00000000529	blm	86	63.158	Ictalurus_punctatus
ENSKMAG00000016608	blm	60	65.693	ENSSTOG00000005000	BLM	69	61.724	Ictidomys_tridecemlineatus
ENSKMAG00000016608	blm	60	79.736	ENSLBEG00000018729	blm	96	80.411	Labrus_bergylta
ENSKMAG00000016608	blm	99	52.234	ENSLOCG00000014302	blm	100	51.593	Lepisosteus_oculatus
ENSKMAG00000016608	blm	56	66.369	ENSMFAG00000042982	BLM	75	76.721	Macaca_fascicularis
ENSKMAG00000016608	blm	50	74.180	ENSMMUG00000019526	BLM	75	76.721	Macaca_mulatta
ENSKMAG00000016608	blm	56	66.242	ENSMNEG00000031251	BLM	75	76.393	Macaca_nemestrina
ENSKMAG00000016608	blm	66	62.897	ENSMLEG00000032934	BLM	69	62.897	Mandrillus_leucophaeus
ENSKMAG00000016608	blm	99	73.760	ENSMAMG00000008726	blm	99	73.631	Mastacembelus_armatus
ENSKMAG00000016608	blm	100	72.370	ENSMZEG00005022323	blm	100	72.440	Maylandia_zebra
ENSKMAG00000016608	blm	64	63.625	ENSMAUG00000008953	Blm	73	61.229	Mesocricetus_auratus
ENSKMAG00000016608	blm	67	62.881	ENSMICG00000034442	BLM	64	68.727	Microcebus_murinus
ENSKMAG00000016608	blm	69	64.277	ENSMOCG00000016367	Blm	58	64.806	Microtus_ochrogaster
ENSKMAG00000016608	blm	100	71.275	ENSMMOG00000006959	blm	100	70.947	Mola_mola
ENSKMAG00000016608	blm	100	73.324	ENSMALG00000007323	blm	100	73.966	Monopterus_albus
ENSKMAG00000016608	blm	59	62.915	MGP_CAROLIEiJ_G0029907	Blm	62	62.588	Mus_caroli
ENSKMAG00000016608	blm	56	66.325	ENSMUSG00000030528	Blm	58	65.820	Mus_musculus
ENSKMAG00000016608	blm	69	62.972	MGP_PahariEiJ_G0013129	Blm	59	63.294	Mus_pahari
ENSKMAG00000016608	blm	56	66.581	MGP_SPRETEiJ_G0031009	Blm	59	66.197	Mus_spretus
ENSKMAG00000016608	blm	59	62.233	ENSMLUG00000014697	BLM	68	61.758	Myotis_lucifugus
ENSKMAG00000016608	blm	87	63.101	ENSNGAG00000001275	Blm	88	62.816	Nannospalax_galili
ENSKMAG00000016608	blm	100	73.001	ENSNBRG00000019702	blm	100	73.072	Neolamprologus_brichardi
ENSKMAG00000016608	blm	75	51.294	ENSNLEG00000012087	BLM	99	51.619	Nomascus_leucogenys
ENSKMAG00000016608	blm	63	57.826	ENSMEUG00000007253	BLM	62	57.770	Notamacropus_eugenii
ENSKMAG00000016608	blm	80	65.331	ENSOPRG00000011667	BLM	51	64.617	Ochotona_princeps
ENSKMAG00000016608	blm	56	60.914	ENSODEG00000015373	BLM	84	56.335	Octodon_degus
ENSKMAG00000016608	blm	100	70.289	ENSONIG00000015193	blm	100	70.281	Oreochromis_niloticus
ENSKMAG00000016608	blm	55	66.538	ENSOANG00000009316	-	100	66.152	Ornithorhynchus_anatinus
ENSKMAG00000016608	blm	100	75.108	ENSORLG00000008110	blm	100	75.036	Oryzias_latipes
ENSKMAG00000016608	blm	100	75.036	ENSORLG00020004812	blm	100	74.964	Oryzias_latipes_hni
ENSKMAG00000016608	blm	100	75.036	ENSORLG00015018640	blm	100	76.510	Oryzias_latipes_hsok
ENSKMAG00000016608	blm	100	74.604	ENSOMEG00000023545	blm	100	74.029	Oryzias_melastigma
ENSKMAG00000016608	blm	59	63.114	ENSOARG00000012875	BLM	58	62.994	Ovis_aries
ENSKMAG00000016608	blm	56	64.968	ENSPPRG00000002471	BLM	50	73.566	Panthera_pardus
ENSKMAG00000016608	blm	62	64.713	ENSPTIG00000016168	BLM	56	73.523	Panthera_tigris_altaica
ENSKMAG00000016608	blm	63	66.369	ENSPANG00000018572	BLM	75	76.721	Papio_anubis
ENSKMAG00000016608	blm	60	73.796	ENSPKIG00000008954	blm	61	73.702	Paramormyrops_kingsleyae
ENSKMAG00000016608	blm	70	70.071	ENSPMGG00000006629	blm	100	69.285	Periophthalmus_magnuspinnatus
ENSKMAG00000016608	blm	72	63.932	ENSPEMG00000017348	Blm	73	62.646	Peromyscus_maniculatus_bairdii
ENSKMAG00000016608	blm	75	53.285	ENSPCIG00000006609	BLM	74	53.601	Phascolarctos_cinereus
ENSKMAG00000016608	blm	100	74.694	ENSPFOG00000005059	blm	100	76.352	Poecilia_formosa
ENSKMAG00000016608	blm	100	75.469	ENSPLAG00000017344	blm	100	76.118	Poecilia_latipinna
ENSKMAG00000016608	blm	100	74.621	ENSPMEG00000000321	blm	100	76.280	Poecilia_mexicana
ENSKMAG00000016608	blm	100	75.432	ENSPREG00000007715	blm	100	76.081	Poecilia_reticulata
ENSKMAG00000016608	blm	59	65.609	ENSPPYG00000006784	BLM	62	60.698	Pongo_abelii
ENSKMAG00000016608	blm	60	60.304	ENSPCAG00000008960	BLM	60	59.306	Procavia_capensis
ENSKMAG00000016608	blm	78	60.465	ENSPCOG00000000439	BLM	61	60.465	Propithecus_coquereli
ENSKMAG00000016608	blm	71	77.741	ENSPVAG00000011642	BLM	56	77.741	Pteropus_vampyrus
ENSKMAG00000016608	blm	100	65.360	ENSPNYG00000010956	blm	100	65.570	Pundamilia_nyererei
ENSKMAG00000016608	blm	100	58.316	ENSPNAG00000011714	blm	100	58.640	Pygocentrus_nattereri
ENSKMAG00000016608	blm	87	63.253	ENSRNOG00000011213	Blm	87	62.322	Rattus_norvegicus
ENSKMAG00000016608	blm	75	53.903	ENSRBIG00000029656	BLM	89	68.421	Rhinopithecus_bieti
ENSKMAG00000016608	blm	79	51.565	ENSRROG00000037871	BLM	89	68.421	Rhinopithecus_roxellana
ENSKMAG00000016608	blm	50	68.182	ENSSBOG00000030957	BLM	62	63.471	Saimiri_boliviensis_boliviensis
ENSKMAG00000016608	blm	75	54.101	ENSSHAG00000007988	BLM	62	60.159	Sarcophilus_harrisii
ENSKMAG00000016608	blm	65	72.033	ENSSFOG00015015462	blm	79	62.868	Scleropages_formosus
ENSKMAG00000016608	blm	100	72.532	ENSSMAG00000001120	blm	100	72.890	Scophthalmus_maximus
ENSKMAG00000016608	blm	100	73.966	ENSSDUG00000010955	blm	100	74.679	Seriola_dumerili
ENSKMAG00000016608	blm	100	73.466	ENSSLDG00000000634	blm	100	74.322	Seriola_lalandi_dorsalis
ENSKMAG00000016608	blm	60	57.565	ENSSARG00000006398	BLM	79	50.746	Sorex_araneus
ENSKMAG00000016608	blm	62	59.749	ENSSPUG00000000013	BLM	76	60.206	Sphenodon_punctatus
ENSKMAG00000016608	blm	99	73.445	ENSSPAG00000013999	blm	99	74.965	Stegastes_partitus
ENSKMAG00000016608	blm	60	63.732	ENSSSCG00000001816	BLM	61	65.050	Sus_scrofa
ENSKMAG00000016608	blm	99	68.938	ENSTRUG00000019860	blm	99	69.512	Takifugu_rubripes
ENSKMAG00000016608	blm	99	65.220	ENSTNIG00000019246	blm	99	65.360	Tetraodon_nigroviridis
ENSKMAG00000016608	blm	56	66.624	ENSTTRG00000016386	BLM	55	65.860	Tursiops_truncatus
ENSKMAG00000016608	blm	55	73.770	ENSUMAG00000009105	BLM	95	67.961	Ursus_maritimus
ENSKMAG00000016608	blm	66	59.552	ENSVPAG00000000085	BLM	64	58.392	Vicugna_pacos
ENSKMAG00000016608	blm	58	64.295	ENSVVUG00000006402	BLM	51	78.049	Vulpes_vulpes
ENSKMAG00000016608	blm	72	63.847	ENSXETG00000007847	blm	59	63.732	Xenopus_tropicalis
ENSKMAG00000016608	blm	100	71.842	ENSXCOG00000020227	blm	100	71.459	Xiphophorus_couchianus
ENSKMAG00000016608	blm	100	75.288	ENSXMAG00000002951	blm	100	76.081	Xiphophorus_maculatus