EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSKMAG00000016847 (Gene tree)
Gene ID
108231937
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
embryonic polyadenylate-binding protein-like
Gene Type
protein_coding
Species
Kryptolebias_marmoratus
Status
putative
Strand
Minus strand
Length
6185 bases
Position
chrLWHD01000014.1:5005575-5011759
Accession
108231937
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSKMAP00000022722PABPPF00658.185.1e-2911
ENSKMAP00000022732RRM_5PF13893.62e-0912
ENSKMAP00000022732RRM_5PF13893.62e-0922
ENSKMAP00000022722RRM_5PF13893.63e-0912
ENSKMAP00000022722RRM_5PF13893.63e-0922
ENSKMAP00000022732RRM_1PF00076.222.7e-9014
ENSKMAP00000022732RRM_1PF00076.222.7e-9024
ENSKMAP00000022732RRM_1PF00076.222.7e-9034
ENSKMAP00000022732RRM_1PF00076.222.7e-9044
ENSKMAP00000022722RRM_1PF00076.223.9e-9014
ENSKMAP00000022722RRM_1PF00076.223.9e-9024
ENSKMAP00000022722RRM_1PF00076.223.9e-9034
ENSKMAP00000022722RRM_1PF00076.223.9e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSKMAT00000023011-1833XM_017409376ENSKMAP00000022722610 (aa)XP_017264865-
ENSKMAT00000023020-1706-ENSKMAP00000022732566 (aa)--
Gene Model
Click here to download ENSKMAG00000016847's gene model file
Pathways
Pathway IDPathway NameSource
kmr03013RNA transportKEGG
kmr03015mRNA surveillance pathwayKEGG
kmr03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000016847's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSKMAG00000016847pabpc1l6337.975ENSKMAG00000006259-9536.364
ENSKMAG00000016847pabpc1l6436.957ENSKMAG00000008154sf3b45336.957
ENSKMAG00000016847pabpc1l5236.047ENSKMAG00000019602celf46034.247
ENSKMAG00000016847pabpc1l9966.667ENSKMAG00000013597pabpc49767.255
ENSKMAG00000016847pabpc1l5830.323ENSKMAG00000014042elavl1a8936.709
ENSKMAG00000016847pabpc1l6436.111ENSKMAG00000014566-6836.111
ENSKMAG00000016847pabpc1l6436.000ENSKMAG00000014807rbm197536.000
ENSKMAG00000016847pabpc1l5237.209ENSKMAG00000003744celf5a5636.735
ENSKMAG00000016847pabpc1l10069.889ENSKMAG00000000605pabpc1a9869.889
ENSKMAG00000016847pabpc1l5434.884ENSKMAG00000011999celf3a6434.884
ENSKMAG00000016847pabpc1l5437.209ENSKMAG00000017307si:dkey-205h23.26235.789
ENSKMAG00000016847pabpc1l10070.253ENSKMAG00000008049pabpc1b9970.906
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSKMAG00000016847pabpc1l9969.368ENSG00000101104PABPC1L9877.160Homo_sapiens
ENSKMAG00000016847pabpc1l10081.643ENSAPOG00000010842pabpc1l9981.643Acanthochromis_polyacanthus
ENSKMAG00000016847pabpc1l9964.899ENSAMEG00000004099PABPC1L10065.211Ailuropoda_melanoleuca
ENSKMAG00000016847pabpc1l9991.325ENSACIG00000021004-10091.325Amphilophus_citrinellus
ENSKMAG00000016847pabpc1l10083.840ENSAOCG00000006167-9983.840Amphiprion_ocellaris
ENSKMAG00000016847pabpc1l10084.992ENSAPEG00000010558-9989.888Amphiprion_percula
ENSKMAG00000016847pabpc1l10088.169ENSATEG00000007428pabpc1l10088.331Anabas_testudineus
ENSKMAG00000016847pabpc1l9970.921ENSAPLG00000008415PABPC1L9970.880Anas_platyrhynchos
ENSKMAG00000016847pabpc1l10073.684ENSACAG00000011841PABPC1L9973.684Anolis_carolinensis
ENSKMAG00000016847pabpc1l9968.447ENSANAG00000026826PABPC1L9968.447Aotus_nancymaae
ENSKMAG00000016847pabpc1l10087.700ENSACLG00000024791pabpc1l10087.700Astatotilapia_calliptera
ENSKMAG00000016847pabpc1l10078.344ENSAMXG00000013552pabpc1l10078.344Astyanax_mexicanus
ENSKMAG00000016847pabpc1l7163.669ENSBTAG00000016849PABPC1L8563.669Bos_taurus
ENSKMAG00000016847pabpc1l6886.905ENSBTAG00000055300-10086.905Bos_taurus
ENSKMAG00000016847pabpc1l9968.608ENSCJAG00000017628PABPC1L9968.608Callithrix_jacchus
ENSKMAG00000016847pabpc1l6580.460ENSCJAG00000038506-10080.460Callithrix_jacchus
ENSKMAG00000016847pabpc1l9962.980ENSCAFG00000009573PABPC1L10062.980Canis_familiaris
ENSKMAG00000016847pabpc1l9969.256ENSCAFG00020013828PABPC1L9969.256Canis_lupus_dingo
ENSKMAG00000016847pabpc1l9868.159ENSCHIG00000025759PABPC1L9168.159Capra_hircus
ENSKMAG00000016847pabpc1l9968.123ENSTSYG00000006645PABPC1L9968.123Carlito_syrichta
ENSKMAG00000016847pabpc1l9963.553ENSCAPG00000014519PABPC1L9963.553Cavia_aperea
ENSKMAG00000016847pabpc1l9965.968ENSCPOG00000013633PABPC1L9965.968Cavia_porcellus
ENSKMAG00000016847pabpc1l9968.558ENSCCAG00000023338PABPC1L9968.558Cebus_capucinus
ENSKMAG00000016847pabpc1l9969.530ENSCATG00000034065PABPC1L9969.467Cercocebus_atys
ENSKMAG00000016847pabpc1l9964.952ENSCLAG00000005298PABPC1L9965.434Chinchilla_lanigera
ENSKMAG00000016847pabpc1l9969.368ENSCSAG00000014242PABPC1L9969.305Chlorocebus_sabaeus
ENSKMAG00000016847pabpc1l6184.733ENSCPBG00000007810-9184.733Chrysemys_picta_bellii
ENSKMAG00000016847pabpc1l7879.638ENSCPBG00000017755-9979.638Chrysemys_picta_bellii
ENSKMAG00000016847pabpc1l9749.590ENSCING00000002796-9747.441Ciona_intestinalis
ENSKMAG00000016847pabpc1l9957.771ENSCSAVG00000004246-8972.185Ciona_savignyi
ENSKMAG00000016847pabpc1l9957.030ENSCSAVG00000003102-10083.893Ciona_savignyi
ENSKMAG00000016847pabpc1l9966.667ENSCANG00000037530PABPC1L9966.773Colobus_angolensis_palliatus
ENSKMAG00000016847pabpc1l9961.613ENSCGRG00001021938Pabpc1l9961.613Cricetulus_griseus_chok1gshd
ENSKMAG00000016847pabpc1l9961.613ENSCGRG00000007946Pabpc1l9961.613Cricetulus_griseus_crigri
ENSKMAG00000016847pabpc1l9976.606ENSCSEG00000021295pabpc1l9976.606Cynoglossus_semilaevis
ENSKMAG00000016847pabpc1l10088.907ENSCVAG00000015943-10088.907Cyprinodon_variegatus
ENSKMAG00000016847pabpc1l10077.689ENSDARG00000002597pabpc1l8894.615Danio_rerio
ENSKMAG00000016847pabpc1l9968.871ENSDNOG00000048450PABPC1L9968.871Dasypus_novemcinctus
ENSKMAG00000016847pabpc1l9966.450ENSDORG00000001067Pabpc1l9966.450Dipodomys_ordii
ENSKMAG00000016847pabpc1l9676.423ENSETEG00000009969PABPC1L7276.423Echinops_telfairi
ENSKMAG00000016847pabpc1l5775.316ENSEASG00005023407-6475.316Equus_asinus_asinus
ENSKMAG00000016847pabpc1l6884.524ENSEASG00005023408-10084.524Equus_asinus_asinus
ENSKMAG00000016847pabpc1l7367.382ENSECAG00000040139-8467.382Equus_caballus
ENSKMAG00000016847pabpc1l9966.397ENSEEUG00000005978PABPC1L9966.397Erinaceus_europaeus
ENSKMAG00000016847pabpc1l10079.048ENSELUG00000001811pabpc1l10079.048Esox_lucius
ENSKMAG00000016847pabpc1l9969.579ENSFCAG00000011692PABPC1L9969.579Felis_catus
ENSKMAG00000016847pabpc1l9373.221ENSFALG00000005372PABPC1L9073.221Ficedula_albicollis
ENSKMAG00000016847pabpc1l9965.366ENSFDAG00000008291PABPC1L9965.366Fukomys_damarensis
ENSKMAG00000016847pabpc1l10089.711ENSFHEG00000003398pabpc1l10089.711Fundulus_heteroclitus
ENSKMAG00000016847pabpc1l10080.421ENSGMOG00000004437pabpc1l9980.421Gadus_morhua
ENSKMAG00000016847pabpc1l8277.143ENSGALG00000004123PABPC1L9980.191Gallus_gallus
ENSKMAG00000016847pabpc1l10083.308ENSGAFG00000021057pabpc1l10083.308Gambusia_affinis
ENSKMAG00000016847pabpc1l9983.628ENSGACG00000002792pabpc1l9983.628Gasterosteus_aculeatus
ENSKMAG00000016847pabpc1l9973.003ENSGAGG00000000589PABPC1L9873.003Gopherus_agassizii
ENSKMAG00000016847pabpc1l9969.368ENSGGOG00000004584PABPC1L9969.467Gorilla_gorilla
ENSKMAG00000016847pabpc1l10087.540ENSHBUG00000006134pabpc1l10087.540Haplochromis_burtoni
ENSKMAG00000016847pabpc1l10065.329ENSHGLG00000008434PABPC1L9965.811Heterocephalus_glaber_female
ENSKMAG00000016847pabpc1l10065.329ENSHGLG00100012151PABPC1L9965.811Heterocephalus_glaber_male
ENSKMAG00000016847pabpc1l6486.517ENSHGLG00100019506-10086.517Heterocephalus_glaber_male
ENSKMAG00000016847pabpc1l9983.833ENSHCOG00000009270pabpc1l10083.833Hippocampus_comes
ENSKMAG00000016847pabpc1l6562.644ENSIPUG00000006780-8562.644Ictalurus_punctatus
ENSKMAG00000016847pabpc1l10077.389ENSIPUG00000012602pabpc1l10077.389Ictalurus_punctatus
ENSKMAG00000016847pabpc1l6462.644ENSIPUG00000006760-8862.644Ictalurus_punctatus
ENSKMAG00000016847pabpc1l9968.447ENSSTOG00000003739PABPC1L9968.447Ictidomys_tridecemlineatus
ENSKMAG00000016847pabpc1l9953.526ENSJJAG00000022406Pabpc1l9951.685Jaculus_jaculus
ENSKMAG00000016847pabpc1l10084.984ENSLBEG00000010084pabpc1l10084.984Labrus_bergylta
ENSKMAG00000016847pabpc1l10073.071ENSLACG00000005762PABPC1L9974.723Latimeria_chalumnae
ENSKMAG00000016847pabpc1l10078.537ENSLOCG00000007519pabpc1l9978.537Lepisosteus_oculatus
ENSKMAG00000016847pabpc1l9967.200ENSLAFG00000003553PABPC1L10067.200Loxodonta_africana
ENSKMAG00000016847pabpc1l9969.692ENSMFAG00000040365PABPC1L9969.628Macaca_fascicularis
ENSKMAG00000016847pabpc1l9968.506ENSMNEG00000032298PABPC1L9968.447Macaca_nemestrina
ENSKMAG00000016847pabpc1l9969.530ENSMLEG00000043139PABPC1L9969.467Mandrillus_leucophaeus
ENSKMAG00000016847pabpc1l9789.112ENSMAMG00000011854pabpc1l9789.112Mastacembelus_armatus
ENSKMAG00000016847pabpc1l10087.700ENSMZEG00005023713pabpc1l10087.700Maylandia_zebra
ENSKMAG00000016847pabpc1l10071.865ENSMGAG00000003674PABPC1L9971.865Meleagris_gallopavo
ENSKMAG00000016847pabpc1l9961.526ENSMOCG00000013186Pabpc1l9961.526Microtus_ochrogaster
ENSKMAG00000016847pabpc1l10085.761ENSMMOG00000020574-9096.923Mola_mola
ENSKMAG00000016847pabpc1l9770.764ENSMODG00000016198PABPC1L9970.764Monodelphis_domestica
ENSKMAG00000016847pabpc1l9885.000ENSMALG00000021622pabpc1l10085.950Monopterus_albus
ENSKMAG00000016847pabpc1l9961.588MGP_CAROLIEiJ_G0024627Pabpc1l9961.192Mus_caroli
ENSKMAG00000016847pabpc1l9961.588ENSMUSG00000054582Pabpc1l9961.588Mus_musculus
ENSKMAG00000016847pabpc1l9962.075MGP_PahariEiJ_G0026071Pabpc1l9962.075Mus_pahari
ENSKMAG00000016847pabpc1l9961.588MGP_SPRETEiJ_G0025549Pabpc1l9961.588Mus_spretus
ENSKMAG00000016847pabpc1l9970.227ENSMPUG00000017646PABPC1L9970.227Mustela_putorius_furo
ENSKMAG00000016847pabpc1l9866.613ENSMLUG00000006324PABPC1L9866.613Myotis_lucifugus
ENSKMAG00000016847pabpc1l9962.240ENSNGAG00000010458Pabpc1l9962.240Nannospalax_galili
ENSKMAG00000016847pabpc1l10087.923ENSNBRG00000016633pabpc1l10092.601Neolamprologus_brichardi
ENSKMAG00000016847pabpc1l8571.310ENSMEUG00000007905-8965.036Notamacropus_eugenii
ENSKMAG00000016847pabpc1l9968.344ENSOPRG00000011846PABPC1L9968.344Ochotona_princeps
ENSKMAG00000016847pabpc1l9962.562ENSODEG00000015482PABPC1L9962.562Octodon_degus
ENSKMAG00000016847pabpc1l6380.625ENSODEG00000002920-9780.625Octodon_degus
ENSKMAG00000016847pabpc1l10087.859ENSONIG00000017314pabpc1l10087.859Oreochromis_niloticus
ENSKMAG00000016847pabpc1l8765.130ENSOANG00000015793-10061.470Ornithorhynchus_anatinus
ENSKMAG00000016847pabpc1l9963.889ENSOCUG00000003005PABPC1L9964.000Oryctolagus_cuniculus
ENSKMAG00000016847pabpc1l10086.774ENSORLG00000010322pabpc1l10089.647Oryzias_latipes
ENSKMAG00000016847pabpc1l10087.097ENSORLG00020021193pabpc1l10089.647Oryzias_latipes_hni
ENSKMAG00000016847pabpc1l10086.613ENSORLG00015017018pabpc1l10089.647Oryzias_latipes_hsok
ENSKMAG00000016847pabpc1l10082.774ENSOMEG00000010789pabpc1l10082.774Oryzias_melastigma
ENSKMAG00000016847pabpc1l9967.624ENSOGAG00000032999PABPC1L10067.624Otolemur_garnettii
ENSKMAG00000016847pabpc1l9968.352ENSOARG00000004578PABPC1L9968.352Ovis_aries
ENSKMAG00000016847pabpc1l9969.530ENSPPAG00000039677PABPC1L9969.628Pan_paniscus
ENSKMAG00000016847pabpc1l7268.210ENSPPRG00000019327-9868.210Panthera_pardus
ENSKMAG00000016847pabpc1l9969.444ENSPTIG00000006524PABPC1L9969.444Panthera_tigris_altaica
ENSKMAG00000016847pabpc1l6877.469ENSPTRG00000013531PABPC1L9877.469Pan_troglodytes
ENSKMAG00000016847pabpc1l9969.530ENSPANG00000018788PABPC1L9969.467Papio_anubis
ENSKMAG00000016847pabpc1l6583.969ENSPKIG00000016810-9383.969Paramormyrops_kingsleyae
ENSKMAG00000016847pabpc1l9979.516ENSPKIG00000007322pabpc1l9979.516Paramormyrops_kingsleyae
ENSKMAG00000016847pabpc1l7381.055ENSPSIG00000013289PABPC1L9981.055Pelodiscus_sinensis
ENSKMAG00000016847pabpc1l6595.455ENSPMGG00000023117pabpc1l9793.488Periophthalmus_magnuspinnatus
ENSKMAG00000016847pabpc1l7785.128ENSPMGG00000023121-9185.128Periophthalmus_magnuspinnatus
ENSKMAG00000016847pabpc1l9960.848ENSPEMG00000020671Pabpc1l9961.551Peromyscus_maniculatus_bairdii
ENSKMAG00000016847pabpc1l10090.260ENSPFOG00000013241pabpc1l9990.260Poecilia_formosa
ENSKMAG00000016847pabpc1l10088.357ENSPLAG00000017490-10088.357Poecilia_latipinna
ENSKMAG00000016847pabpc1l6899.231ENSPLAG00000023686-9299.231Poecilia_latipinna
ENSKMAG00000016847pabpc1l6899.231ENSPMEG00000009185-8899.231Poecilia_mexicana
ENSKMAG00000016847pabpc1l10088.640ENSPMEG00000007677pabpc1l10088.640Poecilia_mexicana
ENSKMAG00000016847pabpc1l7394.891ENSPREG00000015886pabpc1l9994.891Poecilia_reticulata
ENSKMAG00000016847pabpc1l9969.368ENSPPYG00000011042PABPC1L9969.467Pongo_abelii
ENSKMAG00000016847pabpc1l6985.938ENSPCAG00000011787-7585.938Procavia_capensis
ENSKMAG00000016847pabpc1l9968.515ENSPCOG00000020630PABPC1L9968.455Propithecus_coquereli
ENSKMAG00000016847pabpc1l9968.085ENSPVAG00000012663PABPC1L9968.085Pteropus_vampyrus
ENSKMAG00000016847pabpc1l10085.668ENSPNYG00000004101pabpc1l10092.840Pundamilia_nyererei
ENSKMAG00000016847pabpc1l10071.635ENSPNAG00000021248pabpc1l9971.635Pygocentrus_nattereri
ENSKMAG00000016847pabpc1l9961.538ENSRNOG00000012750Pabpc1l9961.750Rattus_norvegicus
ENSKMAG00000016847pabpc1l9969.741ENSRBIG00000035381PABPC1L9969.839Rhinopithecus_bieti
ENSKMAG00000016847pabpc1l9969.368ENSRROG00000044498PABPC1L9969.467Rhinopithecus_roxellana
ENSKMAG00000016847pabpc1l9968.447ENSSBOG00000009532-9968.447Saimiri_boliviensis_boliviensis
ENSKMAG00000016847pabpc1l9864.622ENSSHAG00000011446PABPC1L10064.622Sarcophilus_harrisii
ENSKMAG00000016847pabpc1l10079.647ENSSFOG00015017304pabpc1l9979.647Scleropages_formosus
ENSKMAG00000016847pabpc1l10085.507ENSSMAG00000010516pabpc1l9897.674Scophthalmus_maximus
ENSKMAG00000016847pabpc1l10086.422ENSSDUG00000014743pabpc1l10086.422Seriola_dumerili
ENSKMAG00000016847pabpc1l9788.176ENSSLDG00000006981pabpc1l9992.694Seriola_lalandi_dorsalis
ENSKMAG00000016847pabpc1l10071.905ENSSPUG00000004233PABPC1L9971.905Sphenodon_punctatus
ENSKMAG00000016847pabpc1l10076.998ENSSPAG00000017137pabpc1l9976.998Stegastes_partitus
ENSKMAG00000016847pabpc1l9968.954ENSSSCG00000007382PABPC1L9968.954Sus_scrofa
ENSKMAG00000016847pabpc1l10071.654ENSTGUG00000005114PABPC1L10071.654Taeniopygia_guttata
ENSKMAG00000016847pabpc1l9883.779ENSTRUG00000011085pabpc1l9784.577Takifugu_rubripes
ENSKMAG00000016847pabpc1l9982.419ENSTNIG00000017903pabpc1l9882.419Tetraodon_nigroviridis
ENSKMAG00000016847pabpc1l9577.397ENSTBEG00000002851PABPC1L8077.397Tupaia_belangeri
ENSKMAG00000016847pabpc1l9467.126ENSTTRG00000007618PABPC1L10067.337Tursiops_truncatus
ENSKMAG00000016847pabpc1l9967.810ENSUAMG00000017682PABPC1L9967.810Ursus_americanus
ENSKMAG00000016847pabpc1l7274.652ENSUMAG00000025436PABPC1L9274.652Ursus_maritimus
ENSKMAG00000016847pabpc1l9880.000ENSVVUG00000018939PABPC1L9680.000Vulpes_vulpes
ENSKMAG00000016847pabpc1l10069.537ENSXETG00000022831pabpc1l9969.537Xenopus_tropicalis
ENSKMAG00000016847pabpc1l10088.548ENSXCOG00000005459pabpc1l9992.908Xiphophorus_couchianus
ENSKMAG00000016847pabpc1l10087.719ENSXMAG00000017135pabpc1l10087.719Xiphophorus_maculatus

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