EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000016921 (Gene tree)
Gene ID: 108230931
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 3900 bases
Position: chrLWHD01000010.1:5567683-5571582
Accession: 108230931
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000022806	zf-C2H2	PF00096.26	7.3e-13	1	2
ENSKMAP00000022806	zf-C2H2	PF00096.26	7.3e-13	2	2
ENSKMAP00000022806	zf-met	PF12874.7	7.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000023096	-	1827	XM_017407565	ENSKMAP00000022806	404 (aa)	XP_017263054	UPI0007F8F1CF

Gene Model

Click here to download ENSKMAG00000016921's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000016921's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000016921	prdm12b	67	43.421	ENSKMAG00000013663	prdm5	96	43.421
ENSKMAG00000016921	prdm12b	95	72.021	ENSKMAG00000021205	-	94	71.026

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000016921	prdm12b	87	78.470	ENSG00000130711	PRDM12	88	77.809	Homo_sapiens
ENSKMAG00000016921	prdm12b	100	61.881	ENSAPOG00000018234	-	100	61.881	Acanthochromis_polyacanthus
ENSKMAG00000016921	prdm12b	100	84.729	ENSAPOG00000016051	prdm12b	100	83.990	Acanthochromis_polyacanthus
ENSKMAG00000016921	prdm12b	87	77.273	ENSAMEG00000016234	PRDM12	99	76.420	Ailuropoda_melanoleuca
ENSKMAG00000016921	prdm12b	100	83.704	ENSACIG00000019578	prdm12b	100	82.963	Amphilophus_citrinellus
ENSKMAG00000016921	prdm12b	100	72.662	ENSACIG00000005193	-	100	71.463	Amphilophus_citrinellus
ENSKMAG00000016921	prdm12b	100	83.498	ENSAOCG00000015040	prdm12b	100	82.759	Amphiprion_ocellaris
ENSKMAG00000016921	prdm12b	100	67.874	ENSAPEG00000022849	-	99	68.116	Amphiprion_percula
ENSKMAG00000016921	prdm12b	100	83.498	ENSAPEG00000015092	prdm12b	100	82.759	Amphiprion_percula
ENSKMAG00000016921	prdm12b	100	75.369	ENSATEG00000014595	-	100	75.123	Anabas_testudineus
ENSKMAG00000016921	prdm12b	93	75.200	ENSANAG00000020616	PRDM12	96	77.562	Aotus_nancymaae
ENSKMAG00000016921	prdm12b	100	80.296	ENSACLG00000011876	prdm12b	100	79.557	Astatotilapia_calliptera
ENSKMAG00000016921	prdm12b	100	72.289	ENSACLG00000007631	-	100	72.530	Astatotilapia_calliptera
ENSKMAG00000016921	prdm12b	100	75.059	ENSAMXG00000008540	PRDM12	100	74.408	Astyanax_mexicanus
ENSKMAG00000016921	prdm12b	100	75.743	ENSAMXG00000033665	prdm12b	100	75.743	Astyanax_mexicanus
ENSKMAG00000016921	prdm12b	89	78.492	ENSBTAG00000023797	PRDM12	91	78.212	Bos_taurus
ENSKMAG00000016921	prdm12b	89	78.212	ENSCJAG00000020540	PRDM12	91	77.562	Callithrix_jacchus
ENSKMAG00000016921	prdm12b	78	78.165	ENSCAFG00000023076	PRDM12	89	77.848	Canis_familiaris
ENSKMAG00000016921	prdm12b	89	78.771	ENSCAFG00020024046	PRDM12	90	78.492	Canis_lupus_dingo
ENSKMAG00000016921	prdm12b	89	78.771	ENSCHIG00000025005	PRDM12	90	78.492	Capra_hircus
ENSKMAG00000016921	prdm12b	92	73.387	ENSCPOG00000005901	PRDM12	99	75.350	Cavia_porcellus
ENSKMAG00000016921	prdm12b	89	78.212	ENSCCAG00000037485	PRDM12	90	77.562	Cebus_capucinus
ENSKMAG00000016921	prdm12b	89	78.212	ENSCATG00000020327	PRDM12	90	77.562	Cercocebus_atys
ENSKMAG00000016921	prdm12b	90	77.901	ENSCLAG00000005499	PRDM12	90	78.492	Chinchilla_lanigera
ENSKMAG00000016921	prdm12b	89	78.212	ENSCSAG00000014756	PRDM12	90	77.562	Chlorocebus_sabaeus
ENSKMAG00000016921	prdm12b	100	73.515	ENSCPBG00000022628	PRDM12	99	73.020	Chrysemys_picta_bellii
ENSKMAG00000016921	prdm12b	89	78.492	ENSCGRG00001015005	Prdm12	89	78.212	Cricetulus_griseus_chok1gshd
ENSKMAG00000016921	prdm12b	100	73.902	ENSCVAG00000000944	-	100	73.902	Cyprinodon_variegatus
ENSKMAG00000016921	prdm12b	100	82.673	ENSCVAG00000017166	prdm12b	100	81.931	Cyprinodon_variegatus
ENSKMAG00000016921	prdm12b	100	77.475	ENSDARG00000007430	prdm12b	100	77.228	Danio_rerio
ENSKMAG00000016921	prdm12b	88	77.994	ENSDNOG00000042302	PRDM12	91	77.716	Dasypus_novemcinctus
ENSKMAG00000016921	prdm12b	82	68.468	ENSEBUG00000016780	prdm12b	73	69.069	Eptatretus_burgeri
ENSKMAG00000016921	prdm12b	93	76.000	ENSEASG00005008472	PRDM12	90	78.492	Equus_asinus_asinus
ENSKMAG00000016921	prdm12b	93	76.000	ENSECAG00000005933	PRDM12	90	78.754	Equus_caballus
ENSKMAG00000016921	prdm12b	100	76.485	ENSELUG00000009905	prdm12b	100	75.990	Esox_lucius
ENSKMAG00000016921	prdm12b	100	77.284	ENSELUG00000013674	PRDM12	100	77.531	Esox_lucius
ENSKMAG00000016921	prdm12b	89	78.771	ENSFCAG00000043086	PRDM12	90	78.492	Felis_catus
ENSKMAG00000016921	prdm12b	100	73.515	ENSFALG00000001445	PRDM12	89	73.020	Ficedula_albicollis
ENSKMAG00000016921	prdm12b	100	82.064	ENSFHEG00000003944	prdm12b	100	81.327	Fundulus_heteroclitus
ENSKMAG00000016921	prdm12b	100	70.686	ENSFHEG00000007746	-	100	70.406	Fundulus_heteroclitus
ENSKMAG00000016921	prdm12b	100	77.723	ENSGMOG00000011797	prdm12b	100	76.733	Gadus_morhua
ENSKMAG00000016921	prdm12b	100	73.515	ENSGALG00000003895	PRDM12	99	73.020	Gallus_gallus
ENSKMAG00000016921	prdm12b	100	83.663	ENSGAFG00000010827	prdm12b	99	81.931	Gambusia_affinis
ENSKMAG00000016921	prdm12b	100	82.512	ENSGACG00000016713	prdm12b	99	81.281	Gasterosteus_aculeatus
ENSKMAG00000016921	prdm12b	100	73.515	ENSGAGG00000014083	PRDM12	99	73.020	Gopherus_agassizii
ENSKMAG00000016921	prdm12b	87	78.187	ENSGGOG00000010568	PRDM12	89	77.528	Gorilla_gorilla
ENSKMAG00000016921	prdm12b	100	82.759	ENSHBUG00000022878	prdm12b	100	82.266	Haplochromis_burtoni
ENSKMAG00000016921	prdm12b	100	72.289	ENSHBUG00000022537	-	93	72.530	Haplochromis_burtoni
ENSKMAG00000016921	prdm12b	90	77.686	ENSHGLG00000013939	PRDM12	90	78.212	Heterocephalus_glaber_female
ENSKMAG00000016921	prdm12b	100	66.423	ENSHCOG00000021167	-	100	65.937	Hippocampus_comes
ENSKMAG00000016921	prdm12b	87	83.240	ENSHCOG00000003663	prdm12b	100	76.316	Hippocampus_comes
ENSKMAG00000016921	prdm12b	100	73.020	ENSIPUG00000019544	PRDM12	100	71.535	Ictalurus_punctatus
ENSKMAG00000016921	prdm12b	100	77.970	ENSIPUG00000017053	prdm12b	100	78.218	Ictalurus_punctatus
ENSKMAG00000016921	prdm12b	92	75.526	ENSSTOG00000005986	PRDM12	86	78.492	Ictidomys_tridecemlineatus
ENSKMAG00000016921	prdm12b	89	78.492	ENSJJAG00000005424	Prdm12	99	78.492	Jaculus_jaculus
ENSKMAG00000016921	prdm12b	100	74.020	ENSLBEG00000007776	-	100	73.923	Labrus_bergylta
ENSKMAG00000016921	prdm12b	100	80.296	ENSLBEG00000017769	prdm12b	100	76.611	Labrus_bergylta
ENSKMAG00000016921	prdm12b	100	74.010	ENSLACG00000017560	PRDM12	99	73.267	Latimeria_chalumnae
ENSKMAG00000016921	prdm12b	100	78.960	ENSLOCG00000005429	prdm12b	100	78.713	Lepisosteus_oculatus
ENSKMAG00000016921	prdm12b	89	77.686	ENSLAFG00000006979	PRDM12	89	77.410	Loxodonta_africana
ENSKMAG00000016921	prdm12b	89	78.212	ENSMFAG00000040322	PRDM12	89	77.562	Macaca_fascicularis
ENSKMAG00000016921	prdm12b	89	78.212	ENSMNEG00000037234	PRDM12	90	77.562	Macaca_nemestrina
ENSKMAG00000016921	prdm12b	100	70.813	ENSMAMG00000018988	-	100	71.770	Mastacembelus_armatus
ENSKMAG00000016921	prdm12b	100	83.168	ENSMAMG00000013212	prdm12b	100	82.266	Mastacembelus_armatus
ENSKMAG00000016921	prdm12b	100	72.182	ENSMZEG00005000415	PRDM12	100	72.422	Maylandia_zebra
ENSKMAG00000016921	prdm12b	91	77.568	ENSMGAG00000005438	PRDM12	91	79.887	Meleagris_gallopavo
ENSKMAG00000016921	prdm12b	100	72.772	ENSMAUG00000013040	Prdm12	90	78.212	Mesocricetus_auratus
ENSKMAG00000016921	prdm12b	89	77.961	ENSMICG00000015480	PRDM12	90	78.492	Microcebus_murinus
ENSKMAG00000016921	prdm12b	93	76.253	ENSMOCG00000021026	Prdm12	89	78.492	Microtus_ochrogaster
ENSKMAG00000016921	prdm12b	100	73.086	ENSMODG00000012108	PRDM12	99	72.593	Monodelphis_domestica
ENSKMAG00000016921	prdm12b	100	69.951	ENSMALG00000021901	prdm12b	99	68.227	Monopterus_albus
ENSKMAG00000016921	prdm12b	87	78.754	MGP_CAROLIEiJ_G0023414	Prdm12	89	78.470	Mus_caroli
ENSKMAG00000016921	prdm12b	87	78.754	ENSMUSG00000079466	Prdm12	89	78.470	Mus_musculus
ENSKMAG00000016921	prdm12b	87	78.754	MGP_PahariEiJ_G0024871	Prdm12	89	78.470	Mus_pahari
ENSKMAG00000016921	prdm12b	87	78.754	MGP_SPRETEiJ_G0024331	Prdm12	89	78.470	Mus_spretus
ENSKMAG00000016921	prdm12b	87	79.037	ENSNGAG00000018480	Prdm12	93	78.492	Nannospalax_galili
ENSKMAG00000016921	prdm12b	100	83.498	ENSNBRG00000006727	prdm12b	100	82.759	Neolamprologus_brichardi
ENSKMAG00000016921	prdm12b	100	66.184	ENSNBRG00000024312	-	100	66.184	Neolamprologus_brichardi
ENSKMAG00000016921	prdm12b	100	54.321	ENSMEUG00000003828	PRDM12	86	87.302	Notamacropus_eugenii
ENSKMAG00000016921	prdm12b	89	78.492	ENSOPRG00000008680	PRDM12	99	78.212	Ochotona_princeps
ENSKMAG00000016921	prdm12b	92	75.668	ENSODEG00000016282	PRDM12	61	78.212	Octodon_degus
ENSKMAG00000016921	prdm12b	66	67.910	ENSOANG00000001043	PRDM12	100	67.164	Ornithorhynchus_anatinus
ENSKMAG00000016921	prdm12b	81	77.744	ENSOCUG00000008241	PRDM12	96	77.439	Oryctolagus_cuniculus
ENSKMAG00000016921	prdm12b	100	73.594	ENSORLG00000017558	-	100	73.659	Oryzias_latipes
ENSKMAG00000016921	prdm12b	100	82.266	ENSORLG00000007114	prdm12b	99	81.527	Oryzias_latipes
ENSKMAG00000016921	prdm12b	100	81.728	ENSORLG00020019565	prdm12b	99	82.266	Oryzias_latipes_hni
ENSKMAG00000016921	prdm12b	100	73.839	ENSORLG00020013167	-	100	73.902	Oryzias_latipes_hni
ENSKMAG00000016921	prdm12b	100	73.594	ENSORLG00015003435	-	100	73.659	Oryzias_latipes_hsok
ENSKMAG00000016921	prdm12b	100	81.281	ENSORLG00015007621	prdm12b	99	81.572	Oryzias_latipes_hsok
ENSKMAG00000016921	prdm12b	100	82.310	ENSOMEG00000004134	prdm12b	99	81.572	Oryzias_melastigma
ENSKMAG00000016921	prdm12b	100	73.188	ENSOMEG00000007762	-	100	73.188	Oryzias_melastigma
ENSKMAG00000016921	prdm12b	89	78.771	ENSOGAG00000007557	PRDM12	98	78.492	Otolemur_garnettii
ENSKMAG00000016921	prdm12b	78	75.873	ENSPPAG00000031506	-	99	74.074	Pan_paniscus
ENSKMAG00000016921	prdm12b	100	67.241	ENSPPRG00000023024	PRDM12	84	72.981	Panthera_pardus
ENSKMAG00000016921	prdm12b	87	78.470	ENSPTRG00000021475	PRDM12	89	77.809	Pan_troglodytes
ENSKMAG00000016921	prdm12b	87	78.470	ENSPTRG00000043324	-	89	77.809	Pan_troglodytes
ENSKMAG00000016921	prdm12b	89	78.212	ENSPANG00000025967	PRDM12	90	77.562	Papio_anubis
ENSKMAG00000016921	prdm12b	87	77.054	ENSPKIG00000004305	PRDM12	94	76.204	Paramormyrops_kingsleyae
ENSKMAG00000016921	prdm12b	100	78.218	ENSPKIG00000007228	prdm12b	100	77.970	Paramormyrops_kingsleyae
ENSKMAG00000016921	prdm12b	100	73.515	ENSPSIG00000006739	PRDM12	99	73.020	Pelodiscus_sinensis
ENSKMAG00000016921	prdm12b	100	79.506	ENSPMGG00000008867	prdm12b	99	79.361	Periophthalmus_magnuspinnatus
ENSKMAG00000016921	prdm12b	89	76.164	ENSPMGG00000002356	-	100	70.388	Periophthalmus_magnuspinnatus
ENSKMAG00000016921	prdm12b	93	75.393	ENSPEMG00000009969	Prdm12	90	78.212	Peromyscus_maniculatus_bairdii
ENSKMAG00000016921	prdm12b	100	73.086	ENSPCIG00000024119	PRDM12	99	72.593	Phascolarctos_cinereus
ENSKMAG00000016921	prdm12b	100	82.759	ENSPFOG00000019841	prdm12b	100	81.034	Poecilia_formosa
ENSKMAG00000016921	prdm12b	100	84.653	ENSPLAG00000016626	prdm12b	99	82.921	Poecilia_latipinna
ENSKMAG00000016921	prdm12b	97	84.615	ENSPMEG00000016698	prdm12b	99	82.821	Poecilia_mexicana
ENSKMAG00000016921	prdm12b	100	84.653	ENSPREG00000015073	prdm12b	99	82.673	Poecilia_reticulata
ENSKMAG00000016921	prdm12b	96	67.929	ENSPREG00000003211	-	94	67.172	Poecilia_reticulata
ENSKMAG00000016921	prdm12b	92	75.603	ENSPPYG00000019694	PRDM12	93	77.562	Pongo_abelii
ENSKMAG00000016921	prdm12b	89	78.771	ENSPCOG00000022255	PRDM12	89	78.492	Propithecus_coquereli
ENSKMAG00000016921	prdm12b	89	78.771	ENSPVAG00000001511	PRDM12	89	78.492	Pteropus_vampyrus
ENSKMAG00000016921	prdm12b	100	83.005	ENSPNYG00000009607	prdm12b	100	82.512	Pundamilia_nyererei
ENSKMAG00000016921	prdm12b	100	72.182	ENSPNYG00000013589	-	100	72.422	Pundamilia_nyererei
ENSKMAG00000016921	prdm12b	100	72.616	ENSPNAG00000013396	PRDM12	100	73.350	Pygocentrus_nattereri
ENSKMAG00000016921	prdm12b	100	76.733	ENSPNAG00000024532	prdm12b	100	77.228	Pygocentrus_nattereri
ENSKMAG00000016921	prdm12b	87	78.754	ENSRNOG00000009218	Prdm12	89	78.470	Rattus_norvegicus
ENSKMAG00000016921	prdm12b	85	78.261	ENSRBIG00000042712	PRDM12	91	75.978	Rhinopithecus_bieti
ENSKMAG00000016921	prdm12b	86	78.510	ENSRROG00000043554	PRDM12	99	77.841	Rhinopithecus_roxellana
ENSKMAG00000016921	prdm12b	100	72.414	ENSSHAG00000015972	PRDM12	99	71.921	Sarcophilus_harrisii
ENSKMAG00000016921	prdm12b	100	84.975	ENSSMAG00000003754	prdm12b	100	83.252	Scophthalmus_maximus
ENSKMAG00000016921	prdm12b	100	76.167	ENSSDUG00000019071	-	100	75.921	Seriola_dumerili
ENSKMAG00000016921	prdm12b	100	83.374	ENSSDUG00000023498	prdm12b	100	82.641	Seriola_dumerili
ENSKMAG00000016921	prdm12b	100	70.936	ENSSLDG00000013562	-	100	70.690	Seriola_lalandi_dorsalis
ENSKMAG00000016921	prdm12b	100	83.374	ENSSLDG00000009557	prdm12b	100	82.641	Seriola_lalandi_dorsalis
ENSKMAG00000016921	prdm12b	100	73.762	ENSSPUG00000013424	PRDM12	99	73.267	Sphenodon_punctatus
ENSKMAG00000016921	prdm12b	100	68.642	ENSSPAG00000022420	-	100	67.322	Stegastes_partitus
ENSKMAG00000016921	prdm12b	100	85.714	ENSSPAG00000018824	prdm12b	100	83.251	Stegastes_partitus
ENSKMAG00000016921	prdm12b	89	78.771	ENSSSCG00000005703	PRDM12	90	78.492	Sus_scrofa
ENSKMAG00000016921	prdm12b	100	80.882	ENSTRUG00000018659	prdm12b	100	79.902	Takifugu_rubripes
ENSKMAG00000016921	prdm12b	100	72.236	ENSTRUG00000013239	-	100	72.727	Takifugu_rubripes
ENSKMAG00000016921	prdm12b	100	80.392	ENSTNIG00000009020	prdm12b	99	79.167	Tetraodon_nigroviridis
ENSKMAG00000016921	prdm12b	100	69.193	ENSTNIG00000005859	-	99	68.704	Tetraodon_nigroviridis
ENSKMAG00000016921	prdm12b	89	78.771	ENSUAMG00000009653	PRDM12	91	78.492	Ursus_americanus
ENSKMAG00000016921	prdm12b	89	78.771	ENSVVUG00000027662	PRDM12	78	78.492	Vulpes_vulpes
ENSKMAG00000016921	prdm12b	100	83.911	ENSXCOG00000002836	prdm12b	99	81.436	Xiphophorus_couchianus
ENSKMAG00000016921	prdm12b	100	73.141	ENSXMAG00000028012	-	100	73.253	Xiphophorus_maculatus
ENSKMAG00000016921	prdm12b	100	84.158	ENSXMAG00000005537	prdm12b	100	81.683	Xiphophorus_maculatus