EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000017597 (Gene tree)
Gene ID: 108243182
Gene Symbol: prdm1a
Alias: Blimp-1|Blimp1|U boot|narrowminded|nrd|prdm1|u-boot|ubo|wu:fb99c12|zgc:91885
Full Name: PR/SET domain 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 12041 bases
Position: chrLWHD01000113.1:815901-827941
Accession: 108243182
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000023762	zf-C2H2	PF00096.26	8.6e-14	1	3
ENSKMAP00000023762	zf-C2H2	PF00096.26	8.6e-14	2	3
ENSKMAP00000023762	zf-C2H2	PF00096.26	8.6e-14	3	3
ENSKMAP00000023762	zf-met	PF12874.7	4.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000024052	-	2508	XM_017428463	ENSKMAP00000023750	835 (aa)	XP_017283952	-
ENSKMAT00000024064	-	2253	-	ENSKMAP00000023762	750 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000017597's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000017597's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000017597	prdm1a	76	41.558	ENSKMAG00000011218	prdm1b	69	64.865

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000017597	prdm1a	87	45.442	ENSACIG00000009747	-	87	45.063	Amphilophus_citrinellus
ENSKMAG00000017597	prdm1a	59	54.857	ENSAPEG00000019826	prdm1b	54	63.380	Amphiprion_percula
ENSKMAG00000017597	prdm1a	97	78.665	ENSATEG00000021017	prdm1a	99	78.599	Anabas_testudineus
ENSKMAG00000017597	prdm1a	98	45.546	ENSATEG00000014034	-	97	45.295	Anabas_testudineus
ENSKMAG00000017597	prdm1a	62	64.789	ENSATEG00000006924	prdm1b	53	64.789	Anabas_testudineus
ENSKMAG00000017597	prdm1a	98	76.593	ENSCSEG00000009707	prdm1a	100	76.593	Cynoglossus_semilaevis
ENSKMAG00000017597	prdm1a	100	77.846	ENSCVAG00000019081	prdm1a	100	79.279	Cyprinodon_variegatus
ENSKMAG00000017597	prdm1a	68	50.980	ENSCVAG00000016746	prdm1b	61	54.857	Cyprinodon_variegatus
ENSKMAG00000017597	prdm1a	81	39.422	ENSFHEG00000019848	prdm1b	60	60.563	Fundulus_heteroclitus
ENSKMAG00000017597	prdm1a	72	56.069	ENSGAFG00000016191	prdm1b	57	56.554	Gambusia_affinis
ENSKMAG00000017597	prdm1a	89	43.520	ENSGAFG00000013012	-	61	58.904	Gambusia_affinis
ENSKMAG00000017597	prdm1a	78	54.545	ENSGACG00000002716	prdm1b	60	55.849	Gasterosteus_aculeatus
ENSKMAG00000017597	prdm1a	93	41.949	ENSIPUG00000013740	prdm1b	63	56.548	Ictalurus_punctatus
ENSKMAG00000017597	prdm1a	64	59.036	ENSLBEG00000020955	prdm1b	60	67.606	Labrus_bergylta
ENSKMAG00000017597	prdm1a	77	56.684	ENSLOCG00000004978	prdm1b	71	56.684	Lepisosteus_oculatus
ENSKMAG00000017597	prdm1a	95	43.506	ENSMALG00000000462	-	95	44.083	Monopterus_albus
ENSKMAG00000017597	prdm1a	59	57.738	ENSONIG00000013583	prdm1b	60	57.738	Oreochromis_niloticus
ENSKMAG00000017597	prdm1a	98	42.734	ENSONIG00000014709	-	98	42.145	Oreochromis_niloticus
ENSKMAG00000017597	prdm1a	60	61.194	ENSORLG00000010025	prdm1b	66	61.194	Oryzias_latipes
ENSKMAG00000017597	prdm1a	63	59.420	ENSORLG00015009022	prdm1b	69	59.420	Oryzias_latipes_hsok
ENSKMAG00000017597	prdm1a	56	60.793	ENSPKIG00000022335	prdm1b	65	55.805	Paramormyrops_kingsleyae
ENSKMAG00000017597	prdm1a	51	62.500	ENSPLAG00000018491	prdm1b	59	62.500	Poecilia_latipinna
ENSKMAG00000017597	prdm1a	51	62.500	ENSPMEG00000007869	prdm1b	60	61.972	Poecilia_mexicana
ENSKMAG00000017597	prdm1a	88	42.308	ENSPREG00000011327	prdm1b	52	62.500	Poecilia_reticulata
ENSKMAG00000017597	prdm1a	97	51.555	ENSPVAG00000011732	PRDM1	99	51.377	Pteropus_vampyrus
ENSKMAG00000017597	prdm1a	97	59.974	ENSPNAG00000028442	prdm1a	96	59.254	Pygocentrus_nattereri
ENSKMAG00000017597	prdm1a	54	60.593	ENSSMAG00000020467	prdm1b	54	60.593	Scophthalmus_maximus
ENSKMAG00000017597	prdm1a	95	44.248	ENSSMAG00000017518	-	65	55.676	Scophthalmus_maximus
ENSKMAG00000017597	prdm1a	59	42.444	ENSSDUG00000020610	prdm1b	74	63.380	Seriola_dumerili
ENSKMAG00000017597	prdm1a	96	44.836	ENSSDUG00000000524	-	94	44.277	Seriola_dumerili
ENSKMAG00000017597	prdm1a	68	63.380	ENSSLDG00000021973	prdm1b	75	63.380	Seriola_lalandi_dorsalis
ENSKMAG00000017597	prdm1a	96	44.697	ENSSLDG00000001957	-	94	44.151	Seriola_lalandi_dorsalis
ENSKMAG00000017597	prdm1a	58	63.380	ENSSPAG00000000803	prdm1b	58	63.380	Stegastes_partitus
ENSKMAG00000017597	prdm1a	95	45.946	ENSSPAG00000009830	-	93	45.269	Stegastes_partitus
ENSKMAG00000017597	prdm1a	81	69.820	ENSTNIG00000003926	prdm1a	99	65.030	Tetraodon_nigroviridis
ENSKMAG00000017597	prdm1a	95	41.833	ENSXCOG00000018920	prdm1b	61	56.180	Xiphophorus_couchianus
ENSKMAG00000017597	prdm1a	95	41.356	ENSXMAG00000016765	prdm1b	54	59.722	Xiphophorus_maculatus