EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000018265 (Gene tree)
Gene ID: 108232945
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 9222 bases
Position: chrLWHD01000018.1:1438236-1447457
Accession: 108232945
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000024643	RRM_1	PF00076.22	2.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000024952	-	1933	XM_017411099	ENSKMAP00000024643	320 (aa)	XP_017266588	UPI0007F86763

Gene Model

Click here to download ENSKMAG00000018265's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000018265's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000018265	-	66	45.581	ENSKMAG00000015656	raly	77	48.325
ENSKMAG00000018265	-	84	51.761	ENSKMAG00000022093	-	76	56.054
ENSKMAG00000018265	-	66	60.538	ENSKMAG00000018155	-	73	57.991
ENSKMAG00000018265	-	86	77.617	ENSKMAG00000011170	-	81	79.921

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000018265	-	66	58.605	ENSG00000184672	RALYL	91	79.221	Homo_sapiens
ENSKMAG00000018265	-	78	85.039	ENSAPOG00000006963	hnrnpc	81	80.709	Acanthochromis_polyacanthus
ENSKMAG00000018265	-	97	87.460	ENSACIG00000016568	-	99	88.925	Amphilophus_citrinellus
ENSKMAG00000018265	-	80	81.081	ENSACIG00000000270	-	82	84.722	Amphilophus_citrinellus
ENSKMAG00000018265	-	78	85.827	ENSAOCG00000003896	-	81	81.496	Amphiprion_ocellaris
ENSKMAG00000018265	-	100	87.654	ENSAOCG00000021616	-	100	88.272	Amphiprion_ocellaris
ENSKMAG00000018265	-	97	78.344	ENSAPEG00000019962	-	100	78.344	Amphiprion_percula
ENSKMAG00000018265	-	78	85.827	ENSAPEG00000001489	-	81	81.496	Amphiprion_percula
ENSKMAG00000018265	-	83	92.135	ENSATEG00000018006	-	100	84.472	Anabas_testudineus
ENSKMAG00000018265	-	80	83.268	ENSATEG00000011734	-	84	81.423	Anabas_testudineus
ENSKMAG00000018265	-	66	55.947	ENSAPLG00000015574	RALYL	75	55.605	Anas_platyrhynchos
ENSKMAG00000018265	-	66	55.947	ENSACAG00000028464	RALYL	74	56.502	Anolis_carolinensis
ENSKMAG00000018265	-	66	58.605	ENSANAG00000023383	RALYL	75	57.674	Aotus_nancymaae
ENSKMAG00000018265	-	78	79.528	ENSACLG00000000995	-	81	84.091	Astatotilapia_calliptera
ENSKMAG00000018265	-	78	79.134	ENSACLG00000013636	-	84	78.346	Astatotilapia_calliptera
ENSKMAG00000018265	-	83	89.925	ENSACLG00000005707	-	90	89.925	Astatotilapia_calliptera
ENSKMAG00000018265	-	83	78.491	ENSAMXG00000034915	zgc:55733	86	76.494	Astyanax_mexicanus
ENSKMAG00000018265	-	66	77.251	ENSAMXG00000042946	hnrnpc	97	74.479	Astyanax_mexicanus
ENSKMAG00000018265	-	66	58.605	ENSCJAG00000000402	RALYL	75	57.674	Callithrix_jacchus
ENSKMAG00000018265	-	81	48.763	ENSCPOG00000012314	RALYL	74	55.856	Cavia_porcellus
ENSKMAG00000018265	-	81	48.754	ENSCCAG00000025003	RALYL	75	79.221	Cebus_capucinus
ENSKMAG00000018265	-	66	58.605	ENSCATG00000042145	RALYL	73	58.768	Cercocebus_atys
ENSKMAG00000018265	-	81	49.117	ENSCLAG00000005228	RALYL	74	55.856	Chinchilla_lanigera
ENSKMAG00000018265	-	66	55.066	ENSCHOG00000013228	RALYL	74	51.304	Choloepus_hoffmanni
ENSKMAG00000018265	-	66	58.605	ENSCANG00000039144	RALYL	75	57.674	Colobus_angolensis_palliatus
ENSKMAG00000018265	-	81	49.296	ENSCGRG00001009241	Ralyl	91	49.632	Cricetulus_griseus_chok1gshd
ENSKMAG00000018265	-	69	77.679	ENSCSEG00000019769	-	74	75.455	Cynoglossus_semilaevis
ENSKMAG00000018265	-	78	87.251	ENSCSEG00000021349	-	78	84.462	Cynoglossus_semilaevis
ENSKMAG00000018265	-	86	65.468	ENSCVAG00000002797	-	85	65.354	Cyprinodon_variegatus
ENSKMAG00000018265	-	100	87.462	ENSCVAG00000016981	-	100	86.850	Cyprinodon_variegatus
ENSKMAG00000018265	-	77	79.839	ENSDARG00000053810	hnrnpc	96	71.753	Danio_rerio
ENSKMAG00000018265	-	83	79.545	ENSDARG00000103845	zgc:55733	90	75.600	Danio_rerio
ENSKMAG00000018265	-	84	48.123	ENSDORG00000003721	Ralyl	74	56.502	Dipodomys_ordii
ENSKMAG00000018265	-	51	57.143	ENSETEG00000014028	RALYL	81	60.248	Echinops_telfairi
ENSKMAG00000018265	-	71	45.148	ENSEBUG00000012363	hnrnpc	69	43.644	Eptatretus_burgeri
ENSKMAG00000018265	-	66	48.624	ENSEBUG00000006049	RALYL	73	47.170	Eptatretus_burgeri
ENSKMAG00000018265	-	81	49.648	ENSEEUG00000007202	RALYL	92	49.815	Erinaceus_europaeus
ENSKMAG00000018265	-	78	78.947	ENSELUG00000007714	-	88	75.191	Esox_lucius
ENSKMAG00000018265	-	83	79.044	ENSELUG00000004132	-	99	74.434	Esox_lucius
ENSKMAG00000018265	-	82	47.535	ENSFALG00000008647	RALYL	96	58.685	Ficedula_albicollis
ENSKMAG00000018265	-	80	85.926	ENSFHEG00000007278	-	99	80.061	Fundulus_heteroclitus
ENSKMAG00000018265	-	86	75.445	ENSFHEG00000003605	-	83	75.197	Fundulus_heteroclitus
ENSKMAG00000018265	-	66	59.070	ENSGALG00000036938	RALYL	74	55.605	Gallus_gallus
ENSKMAG00000018265	-	97	90.415	ENSGAFG00000020992	-	99	88.673	Gambusia_affinis
ENSKMAG00000018265	-	86	75.089	ENSGAFG00000020486	-	80	79.167	Gambusia_affinis
ENSKMAG00000018265	-	100	79.331	ENSGACG00000017772	-	96	88.353	Gasterosteus_aculeatus
ENSKMAG00000018265	-	68	73.214	ENSGACG00000018932	-	85	67.907	Gasterosteus_aculeatus
ENSKMAG00000018265	-	66	58.605	ENSGGOG00000000841	RALYL	73	58.768	Gorilla_gorilla
ENSKMAG00000018265	-	78	79.921	ENSHBUG00000018342	-	98	65.774	Haplochromis_burtoni
ENSKMAG00000018265	-	100	85.759	ENSHBUG00000010527	-	100	86.378	Haplochromis_burtoni
ENSKMAG00000018265	-	81	48.763	ENSHGLG00000004866	RALYL	74	55.405	Heterocephalus_glaber_female
ENSKMAG00000018265	-	81	48.763	ENSHGLG00100017480	RALYL	74	55.405	Heterocephalus_glaber_male
ENSKMAG00000018265	-	81	83.883	ENSHCOG00000012333	hnrnpc	91	83.453	Hippocampus_comes
ENSKMAG00000018265	-	81	78.764	ENSIPUG00000011271	hnrnpc	99	77.729	Ictalurus_punctatus
ENSKMAG00000018265	-	83	79.623	ENSIPUG00000008666	zgc:55733	94	79.167	Ictalurus_punctatus
ENSKMAG00000018265	-	81	48.944	ENSSTOG00000012583	RALYL	76	56.054	Ictidomys_tridecemlineatus
ENSKMAG00000018265	-	100	82.812	ENSLBEG00000006193	-	96	87.255	Labrus_bergylta
ENSKMAG00000018265	-	87	72.664	ENSLBEG00000024418	-	84	72.308	Labrus_bergylta
ENSKMAG00000018265	-	86	76.173	ENSLBEG00000006979	-	85	76.707	Labrus_bergylta
ENSKMAG00000018265	-	82	69.517	ENSLOCG00000002560	hnrnpc	88	68.726	Lepisosteus_oculatus
ENSKMAG00000018265	-	66	58.605	ENSMNEG00000033288	RALYL	73	58.768	Macaca_nemestrina
ENSKMAG00000018265	-	66	58.605	ENSMLEG00000038284	RALYL	73	58.768	Mandrillus_leucophaeus
ENSKMAG00000018265	-	80	81.712	ENSMAMG00000012236	-	84	78.656	Mastacembelus_armatus
ENSKMAG00000018265	-	83	91.386	ENSMAMG00000008033	-	100	88.820	Mastacembelus_armatus
ENSKMAG00000018265	-	80	77.778	ENSMZEG00005020460	-	87	76.654	Maylandia_zebra
ENSKMAG00000018265	-	100	86.068	ENSMZEG00005024249	-	100	86.687	Maylandia_zebra
ENSKMAG00000018265	-	81	49.296	ENSMAUG00000015149	Ralyl	91	49.632	Mesocricetus_auratus
ENSKMAG00000018265	-	82	50.000	ENSMICG00000005558	RALYL	78	79.221	Microcebus_murinus
ENSKMAG00000018265	-	81	49.296	ENSMOCG00000017371	Ralyl	74	55.605	Microtus_ochrogaster
ENSKMAG00000018265	-	90	85.666	ENSMMOG00000019520	-	100	82.253	Mola_mola
ENSKMAG00000018265	-	82	80.682	ENSMMOG00000021465	-	88	80.632	Mola_mola
ENSKMAG00000018265	-	80	73.438	ENSMALG00000007520	-	83	71.429	Monopterus_albus
ENSKMAG00000018265	-	83	87.218	ENSMALG00000014623	-	84	87.218	Monopterus_albus
ENSKMAG00000018265	-	81	49.296	ENSMUSG00000039717	Ralyl	91	77.922	Mus_musculus
ENSKMAG00000018265	-	81	50.000	ENSMPUG00000010724	RALYL	74	55.157	Mustela_putorius_furo
ENSKMAG00000018265	-	81	48.944	ENSNGAG00000013375	Ralyl	74	55.605	Nannospalax_galili
ENSKMAG00000018265	-	100	87.616	ENSNBRG00000015676	-	100	88.235	Neolamprologus_brichardi
ENSKMAG00000018265	-	80	80.309	ENSNBRG00000004912	-	91	79.464	Neolamprologus_brichardi
ENSKMAG00000018265	-	66	58.605	ENSNLEG00000002702	RALYL	70	58.768	Nomascus_leucogenys
ENSKMAG00000018265	-	56	51.031	ENSOPRG00000013650	-	98	47.917	Ochotona_princeps
ENSKMAG00000018265	-	82	49.648	ENSODEG00000001012	RALYL	91	49.446	Octodon_degus
ENSKMAG00000018265	-	100	86.068	ENSONIG00000018350	-	100	86.687	Oreochromis_niloticus
ENSKMAG00000018265	-	78	80.709	ENSONIG00000007859	-	90	79.771	Oreochromis_niloticus
ENSKMAG00000018265	-	78	72.941	ENSORLG00000009999	-	82	69.804	Oryzias_latipes
ENSKMAG00000018265	-	100	84.685	ENSORLG00000003144	-	100	85.586	Oryzias_latipes
ENSKMAG00000018265	-	78	72.549	ENSORLG00020018228	hnrnpc	82	69.412	Oryzias_latipes_hni
ENSKMAG00000018265	-	100	84.179	ENSORLG00015009460	-	100	82.282	Oryzias_latipes_hsok
ENSKMAG00000018265	-	78	72.941	ENSORLG00015019755	-	82	69.804	Oryzias_latipes_hsok
ENSKMAG00000018265	-	100	88.820	ENSOMEG00000022665	-	100	90.683	Oryzias_melastigma
ENSKMAG00000018265	-	78	74.510	ENSOMEG00000020488	-	81	71.373	Oryzias_melastigma
ENSKMAG00000018265	-	66	58.605	ENSPPAG00000038705	RALYL	73	58.768	Pan_paniscus
ENSKMAG00000018265	-	82	52.364	ENSPPRG00000018612	RALYL	73	58.685	Panthera_pardus
ENSKMAG00000018265	-	82	52.364	ENSPTIG00000020331	RALYL	73	58.685	Panthera_tigris_altaica
ENSKMAG00000018265	-	66	58.605	ENSPTRG00000020381	RALYL	73	58.768	Pan_troglodytes
ENSKMAG00000018265	-	66	58.605	ENSPANG00000029305	RALYL	73	58.768	Papio_anubis
ENSKMAG00000018265	-	82	76.952	ENSPKIG00000022837	-	96	75.159	Paramormyrops_kingsleyae
ENSKMAG00000018265	-	100	73.780	ENSPKIG00000008592	-	96	75.159	Paramormyrops_kingsleyae
ENSKMAG00000018265	-	82	49.129	ENSPSIG00000011135	RALYL	75	55.066	Pelodiscus_sinensis
ENSKMAG00000018265	-	69	89.189	ENSPMGG00000013144	-	82	85.321	Periophthalmus_magnuspinnatus
ENSKMAG00000018265	-	95	62.706	ENSPMGG00000017774	-	94	63.036	Periophthalmus_magnuspinnatus
ENSKMAG00000018265	-	81	49.296	ENSPEMG00000016447	Ralyl	91	49.632	Peromyscus_maniculatus_bairdii
ENSKMAG00000018265	-	66	54.825	ENSPMAG00000002407	RALYL	96	53.571	Petromyzon_marinus
ENSKMAG00000018265	-	86	75.357	ENSPFOG00000001583	-	82	77.165	Poecilia_formosa
ENSKMAG00000018265	-	100	91.331	ENSPFOG00000002643	-	100	88.854	Poecilia_formosa
ENSKMAG00000018265	-	86	74.286	ENSPLAG00000015305	-	82	75.984	Poecilia_latipinna
ENSKMAG00000018265	-	100	91.950	ENSPLAG00000000061	-	100	89.783	Poecilia_latipinna
ENSKMAG00000018265	-	86	76.512	ENSPMEG00000004802	-	82	77.165	Poecilia_mexicana
ENSKMAG00000018265	-	100	90.712	ENSPMEG00000016524	-	100	88.235	Poecilia_mexicana
ENSKMAG00000018265	-	83	92.075	ENSPREG00000001852	-	89	91.698	Poecilia_reticulata
ENSKMAG00000018265	-	78	76.772	ENSPREG00000007928	-	82	75.984	Poecilia_reticulata
ENSKMAG00000018265	-	66	48.113	ENSPPYG00000018710	-	62	73.529	Pongo_abelii
ENSKMAG00000018265	-	82	48.239	ENSPVAG00000010821	RALYL	83	51.394	Pteropus_vampyrus
ENSKMAG00000018265	-	99	74.608	ENSPNYG00000003747	-	90	89.552	Pundamilia_nyererei
ENSKMAG00000018265	-	80	80.695	ENSPNYG00000020293	-	86	78.346	Pundamilia_nyererei
ENSKMAG00000018265	-	83	72.963	ENSPNAG00000019200	zgc:55733	81	74.609	Pygocentrus_nattereri
ENSKMAG00000018265	-	77	79.757	ENSPNAG00000015686	hnrnpc	89	78.571	Pygocentrus_nattereri
ENSKMAG00000018265	-	66	58.605	ENSRROG00000023925	RALYL	80	77.215	Rhinopithecus_roxellana
ENSKMAG00000018265	-	87	76.736	ENSSFOG00015012924	-	80	96.203	Scleropages_formosus
ENSKMAG00000018265	-	83	76.753	ENSSFOG00015012015	-	81	85.915	Scleropages_formosus
ENSKMAG00000018265	-	81	88.213	ENSSMAG00000011147	-	79	92.130	Scophthalmus_maximus
ENSKMAG00000018265	-	78	78.740	ENSSMAG00000013592	-	80	77.165	Scophthalmus_maximus
ENSKMAG00000018265	-	100	81.931	ENSSDUG00000006730	-	100	82.555	Seriola_dumerili
ENSKMAG00000018265	-	87	79.004	ENSSDUG00000001723	-	81	80.709	Seriola_dumerili
ENSKMAG00000018265	-	83	86.466	ENSSLDG00000007474	-	92	85.714	Seriola_lalandi_dorsalis
ENSKMAG00000018265	-	84	80.515	ENSSLDG00000007454	-	82	81.102	Seriola_lalandi_dorsalis
ENSKMAG00000018265	-	85	80.866	ENSSPAG00000023204	-	81	81.890	Stegastes_partitus
ENSKMAG00000018265	-	100	89.375	ENSSPAG00000013996	-	100	89.375	Stegastes_partitus
ENSKMAG00000018265	-	82	48.944	ENSTGUG00000011689	RALYL	86	50.988	Taeniopygia_guttata
ENSKMAG00000018265	-	83	79.623	ENSTRUG00000020158	-	82	76.587	Takifugu_rubripes
ENSKMAG00000018265	-	80	78.462	ENSTNIG00000007427	-	83	78.516	Tetraodon_nigroviridis
ENSKMAG00000018265	-	79	78.039	ENSTNIG00000000334	-	93	76.357	Tetraodon_nigroviridis
ENSKMAG00000018265	-	66	50.000	ENSTBEG00000005551	RALYL	86	50.679	Tupaia_belangeri
ENSKMAG00000018265	-	82	48.214	ENSTTRG00000015762	RALYL	91	47.547	Tursiops_truncatus
ENSKMAG00000018265	-	81	47.619	ENSVPAG00000008501	RALYL	74	53.521	Vicugna_pacos
ENSKMAG00000018265	-	89	68.750	ENSXCOG00000006552	-	81	70.472	Xiphophorus_couchianus
ENSKMAG00000018265	-	83	92.075	ENSXMAG00000022849	-	86	91.698	Xiphophorus_maculatus
ENSKMAG00000018265	-	86	76.157	ENSXMAG00000009333	-	82	75.099	Xiphophorus_maculatus