EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000018542 (Gene tree)
Gene ID: 108248383
Gene Symbol: sbds
Alias: zgc:56700
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 5584 bases
Position: chrLWHD01000342.1:71548-77131
Accession: 108248383
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000025033	SBDS	PF01172.18	1.8e-34	1	1
ENSKMAP00000025033	SBDS_C	PF09377.10	2.1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000025349	-	3647	XM_017437141	ENSKMAP00000025033	249 (aa)	XP_017292630	UPI0007F89D8A

Gene Model

Click here to download ENSKMAG00000018542's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000018542's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000018542	sbds	100	83.936	ENSG00000126524	SBDS	97	90.361	Homo_sapiens
ENSKMAG00000018542	sbds	100	95.984	ENSAPOG00000014285	sbds	100	95.984	Acanthochromis_polyacanthus
ENSKMAG00000018542	sbds	100	84.337	ENSAMEG00000018167	SBDS	99	84.337	Ailuropoda_melanoleuca
ENSKMAG00000018542	sbds	100	95.635	ENSACIG00000007308	sbds	100	95.635	Amphilophus_citrinellus
ENSKMAG00000018542	sbds	100	96.386	ENSAOCG00000016770	sbds	100	96.386	Amphiprion_ocellaris
ENSKMAG00000018542	sbds	100	96.787	ENSAPEG00000015897	sbds	100	96.787	Amphiprion_percula
ENSKMAG00000018542	sbds	100	95.181	ENSATEG00000006901	sbds	100	95.181	Anabas_testudineus
ENSKMAG00000018542	sbds	83	82.524	ENSANAG00000037501	-	99	82.524	Aotus_nancymaae
ENSKMAG00000018542	sbds	93	77.489	ENSANAG00000024342	-	95	80.723	Aotus_nancymaae
ENSKMAG00000018542	sbds	100	95.984	ENSACLG00000018750	sbds	100	95.984	Astatotilapia_calliptera
ENSKMAG00000018542	sbds	100	88.755	ENSAMXG00000005361	sbds	99	88.755	Astyanax_mexicanus
ENSKMAG00000018542	sbds	100	83.534	ENSBTAG00000004051	SBDS	99	83.534	Bos_taurus
ENSKMAG00000018542	sbds	98	58.537	WBGene00021063	sbds-1	97	58.537	Caenorhabditis_elegans
ENSKMAG00000018542	sbds	100	83.936	ENSCJAG00000041007	SBDS	99	83.936	Callithrix_jacchus
ENSKMAG00000018542	sbds	100	82.470	ENSCAFG00000010797	SBDS	99	82.470	Canis_familiaris
ENSKMAG00000018542	sbds	100	84.337	ENSCAFG00020005357	SBDS	99	84.337	Canis_lupus_dingo
ENSKMAG00000018542	sbds	100	83.534	ENSCHIG00000026854	SBDS	99	83.534	Capra_hircus
ENSKMAG00000018542	sbds	100	83.936	ENSTSYG00000033822	SBDS	99	83.936	Carlito_syrichta
ENSKMAG00000018542	sbds	65	80.982	ENSCAPG00000006634	SBDS	99	80.982	Cavia_aperea
ENSKMAG00000018542	sbds	100	84.337	ENSCPOG00000036143	SBDS	99	84.337	Cavia_porcellus
ENSKMAG00000018542	sbds	100	83.936	ENSCCAG00000020671	SBDS	93	90.361	Cebus_capucinus
ENSKMAG00000018542	sbds	100	83.936	ENSCATG00000039026	SBDS	99	83.936	Cercocebus_atys
ENSKMAG00000018542	sbds	100	84.739	ENSCLAG00000005721	-	99	84.739	Chinchilla_lanigera
ENSKMAG00000018542	sbds	99	59.274	ENSCLAG00000002113	-	99	59.274	Chinchilla_lanigera
ENSKMAG00000018542	sbds	100	83.936	ENSCSAG00000018275	SBDS	99	83.936	Chlorocebus_sabaeus
ENSKMAG00000018542	sbds	100	78.715	ENSCHOG00000003795	SBDS	99	78.715	Choloepus_hoffmanni
ENSKMAG00000018542	sbds	100	86.747	ENSCPBG00000014893	SBDS	99	86.747	Chrysemys_picta_bellii
ENSKMAG00000018542	sbds	99	68.145	ENSCSAVG00000011811	-	99	68.145	Ciona_savignyi
ENSKMAG00000018542	sbds	100	83.534	ENSCANG00000032368	SBDS	99	83.534	Colobus_angolensis_palliatus
ENSKMAG00000018542	sbds	65	80.982	ENSCGRG00001019886	Sbds	99	80.982	Cricetulus_griseus_chok1gshd
ENSKMAG00000018542	sbds	83	83.010	ENSCGRG00000009211	Sbds	99	83.010	Cricetulus_griseus_crigri
ENSKMAG00000018542	sbds	100	93.574	ENSCSEG00000005798	sbds	100	93.574	Cynoglossus_semilaevis
ENSKMAG00000018542	sbds	100	95.181	ENSCVAG00000001053	sbds	100	95.181	Cyprinodon_variegatus
ENSKMAG00000018542	sbds	100	88.353	ENSDARG00000027803	sbds	99	88.353	Danio_rerio
ENSKMAG00000018542	sbds	100	84.337	ENSDNOG00000041174	SBDS	99	84.337	Dasypus_novemcinctus
ENSKMAG00000018542	sbds	100	84.739	ENSDORG00000026218	Sbds	99	84.739	Dipodomys_ordii
ENSKMAG00000018542	sbds	91	62.719	FBgn0035714	CG8549	98	62.348	Drosophila_melanogaster
ENSKMAG00000018542	sbds	83	65.534	ENSEBUG00000015780	sbds	92	65.534	Eptatretus_burgeri
ENSKMAG00000018542	sbds	100	83.936	ENSEASG00005008821	SBDS	99	83.936	Equus_asinus_asinus
ENSKMAG00000018542	sbds	100	83.936	ENSECAG00000008202	SBDS	99	83.936	Equus_caballus
ENSKMAG00000018542	sbds	84	62.981	ENSEEUG00000004768	SBDS	100	62.981	Erinaceus_europaeus
ENSKMAG00000018542	sbds	100	89.157	ENSELUG00000008382	sbds	99	89.157	Esox_lucius
ENSKMAG00000018542	sbds	100	83.936	ENSFCAG00000022142	SBDS	99	83.936	Felis_catus
ENSKMAG00000018542	sbds	100	89.157	ENSFALG00000013808	SBDS	99	89.157	Ficedula_albicollis
ENSKMAG00000018542	sbds	100	84.337	ENSFDAG00000018947	-	99	84.337	Fukomys_damarensis
ENSKMAG00000018542	sbds	100	91.968	ENSFHEG00000000708	sbds	100	91.968	Fundulus_heteroclitus
ENSKMAG00000018542	sbds	100	89.157	ENSGMOG00000018356	sbds	99	89.157	Gadus_morhua
ENSKMAG00000018542	sbds	100	85.944	ENSGALG00000027989	SBDS	99	85.944	Gallus_gallus
ENSKMAG00000018542	sbds	92	92.609	ENSGAFG00000014204	sbds	100	92.609	Gambusia_affinis
ENSKMAG00000018542	sbds	100	90.361	ENSGACG00000012697	sbds	100	90.361	Gasterosteus_aculeatus
ENSKMAG00000018542	sbds	86	87.324	ENSGAGG00000022402	SBDS	99	87.324	Gopherus_agassizii
ENSKMAG00000018542	sbds	96	65.417	ENSGGOG00000040023	-	92	65.417	Gorilla_gorilla
ENSKMAG00000018542	sbds	100	95.984	ENSHBUG00000002660	sbds	100	95.984	Haplochromis_burtoni
ENSKMAG00000018542	sbds	100	82.731	ENSHGLG00000009671	SBDS	99	82.731	Heterocephalus_glaber_female
ENSKMAG00000018542	sbds	100	82.731	ENSHGLG00100011332	SBDS	99	82.731	Heterocephalus_glaber_male
ENSKMAG00000018542	sbds	100	91.165	ENSHCOG00000018606	sbds	100	91.165	Hippocampus_comes
ENSKMAG00000018542	sbds	100	88.353	ENSIPUG00000006536	sbds	99	88.353	Ictalurus_punctatus
ENSKMAG00000018542	sbds	100	60.714	ENSJJAG00000003934	-	99	61.200	Jaculus_jaculus
ENSKMAG00000018542	sbds	99	81.781	ENSJJAG00000012033	-	99	81.781	Jaculus_jaculus
ENSKMAG00000018542	sbds	100	93.173	ENSLBEG00000016687	sbds	100	93.173	Labrus_bergylta
ENSKMAG00000018542	sbds	100	72.332	ENSLACG00000018916	SBDS	99	72.332	Latimeria_chalumnae
ENSKMAG00000018542	sbds	100	88.755	ENSLOCG00000004073	sbds	99	88.755	Lepisosteus_oculatus
ENSKMAG00000018542	sbds	100	84.337	ENSLAFG00000008763	SBDS	99	84.337	Loxodonta_africana
ENSKMAG00000018542	sbds	100	83.936	ENSMFAG00000032620	SBDS	99	83.936	Macaca_fascicularis
ENSKMAG00000018542	sbds	100	83.936	ENSMMUG00000045653	SBDS	99	83.936	Macaca_mulatta
ENSKMAG00000018542	sbds	100	83.936	ENSMNEG00000031523	SBDS	99	83.936	Macaca_nemestrina
ENSKMAG00000018542	sbds	100	67.194	ENSMLEG00000036826	SBDS	99	67.194	Mandrillus_leucophaeus
ENSKMAG00000018542	sbds	100	95.582	ENSMAMG00000016062	sbds	100	95.582	Mastacembelus_armatus
ENSKMAG00000018542	sbds	100	95.984	ENSMZEG00005024385	sbds	100	95.984	Maylandia_zebra
ENSKMAG00000018542	sbds	100	85.944	ENSMGAG00000002119	SBDS	99	85.944	Meleagris_gallopavo
ENSKMAG00000018542	sbds	100	68.675	ENSMAUG00000022214	-	100	68.675	Mesocricetus_auratus
ENSKMAG00000018542	sbds	100	83.534	ENSMICG00000014366	SBDS	99	83.534	Microcebus_murinus
ENSKMAG00000018542	sbds	100	83.936	ENSMOCG00000011739	Sbds	99	83.936	Microtus_ochrogaster
ENSKMAG00000018542	sbds	100	82.800	ENSMMOG00000005061	sbds	100	82.800	Mola_mola
ENSKMAG00000018542	sbds	100	84.739	ENSMODG00000006644	SBDS	99	84.739	Monodelphis_domestica
ENSKMAG00000018542	sbds	100	91.566	ENSMALG00000010219	sbds	100	91.566	Monopterus_albus
ENSKMAG00000018542	sbds	100	83.936	MGP_CAROLIEiJ_G0027800	Sbds	98	90.476	Mus_caroli
ENSKMAG00000018542	sbds	100	84.337	ENSMUSG00000025337	Sbds	98	90.476	Mus_musculus
ENSKMAG00000018542	sbds	100	83.936	MGP_PahariEiJ_G0024384	Sbds	98	90.476	Mus_pahari
ENSKMAG00000018542	sbds	100	84.337	MGP_SPRETEiJ_G0028798	Sbds	98	90.476	Mus_spretus
ENSKMAG00000018542	sbds	67	84.431	ENSMPUG00000016192	SBDS	96	84.431	Mustela_putorius_furo
ENSKMAG00000018542	sbds	73	79.006	ENSMLUG00000013575	SBDS	99	79.006	Myotis_lucifugus
ENSKMAG00000018542	sbds	100	84.739	ENSNGAG00000012093	Sbds	99	84.739	Nannospalax_galili
ENSKMAG00000018542	sbds	100	95.984	ENSNBRG00000017027	sbds	100	95.984	Neolamprologus_brichardi
ENSKMAG00000018542	sbds	100	83.936	ENSNLEG00000013288	SBDS	99	83.936	Nomascus_leucogenys
ENSKMAG00000018542	sbds	100	85.141	ENSOPRG00000008721	SBDS	99	85.141	Ochotona_princeps
ENSKMAG00000018542	sbds	100	63.454	ENSODEG00000000137	-	84	66.265	Octodon_degus
ENSKMAG00000018542	sbds	100	75.904	ENSODEG00000019253	-	84	75.904	Octodon_degus
ENSKMAG00000018542	sbds	100	66.265	ENSODEG00000001116	-	99	66.265	Octodon_degus
ENSKMAG00000018542	sbds	100	95.984	ENSONIG00000005874	sbds	100	95.984	Oreochromis_niloticus
ENSKMAG00000018542	sbds	82	82.843	ENSOANG00000007674	-	99	82.843	Ornithorhynchus_anatinus
ENSKMAG00000018542	sbds	100	85.944	ENSOCUG00000003170	SBDS	99	85.944	Oryctolagus_cuniculus
ENSKMAG00000018542	sbds	100	91.968	ENSORLG00000023489	sbds	100	91.968	Oryzias_latipes
ENSKMAG00000018542	sbds	100	91.566	ENSORLG00020019282	sbds	100	91.566	Oryzias_latipes_hni
ENSKMAG00000018542	sbds	100	91.566	ENSORLG00015008005	sbds	100	91.566	Oryzias_latipes_hsok
ENSKMAG00000018542	sbds	100	93.976	ENSOMEG00000022747	sbds	100	93.976	Oryzias_melastigma
ENSKMAG00000018542	sbds	100	72.289	ENSOGAG00000015036	-	99	72.289	Otolemur_garnettii
ENSKMAG00000018542	sbds	100	83.133	ENSOGAG00000009011	-	99	83.133	Otolemur_garnettii
ENSKMAG00000018542	sbds	100	83.534	ENSOARG00000010609	SBDS	99	83.534	Ovis_aries
ENSKMAG00000018542	sbds	100	83.133	ENSPPAG00000043889	-	99	83.133	Pan_paniscus
ENSKMAG00000018542	sbds	100	83.936	ENSPPRG00000002307	SBDS	99	83.936	Panthera_pardus
ENSKMAG00000018542	sbds	100	83.936	ENSPTIG00000021308	SBDS	99	83.936	Panthera_tigris_altaica
ENSKMAG00000018542	sbds	87	81.567	ENSPTRG00000048174	-	96	81.567	Pan_troglodytes
ENSKMAG00000018542	sbds	100	83.936	ENSPTRG00000019254	SBDS	99	83.936	Pan_troglodytes
ENSKMAG00000018542	sbds	100	70.281	ENSPTRG00000050835	-	99	70.281	Pan_troglodytes
ENSKMAG00000018542	sbds	100	70.281	ENSPTRG00000047744	-	99	70.281	Pan_troglodytes
ENSKMAG00000018542	sbds	100	83.936	ENSPANG00000004078	SBDS	99	83.936	Papio_anubis
ENSKMAG00000018542	sbds	100	91.165	ENSPKIG00000006489	sbds	99	91.165	Paramormyrops_kingsleyae
ENSKMAG00000018542	sbds	83	84.541	ENSPSIG00000014603	SBDS	99	84.541	Pelodiscus_sinensis
ENSKMAG00000018542	sbds	100	95.181	ENSPMGG00000004246	sbds	100	95.181	Periophthalmus_magnuspinnatus
ENSKMAG00000018542	sbds	100	84.739	ENSPEMG00000008728	Sbds	99	84.739	Peromyscus_maniculatus_bairdii
ENSKMAG00000018542	sbds	100	84.337	ENSPCIG00000029718	SBDS	99	84.337	Phascolarctos_cinereus
ENSKMAG00000018542	sbds	100	95.181	ENSPFOG00000015837	sbds	100	95.181	Poecilia_formosa
ENSKMAG00000018542	sbds	100	95.582	ENSPLAG00000003641	sbds	100	95.582	Poecilia_latipinna
ENSKMAG00000018542	sbds	100	95.181	ENSPMEG00000019483	sbds	100	95.181	Poecilia_mexicana
ENSKMAG00000018542	sbds	100	95.181	ENSPREG00000018758	sbds	100	95.181	Poecilia_reticulata
ENSKMAG00000018542	sbds	100	83.936	ENSPPYG00000017513	SBDS	99	83.936	Pongo_abelii
ENSKMAG00000018542	sbds	100	83.133	ENSPCOG00000021098	SBDS	99	83.133	Propithecus_coquereli
ENSKMAG00000018542	sbds	100	84.337	ENSPVAG00000009369	SBDS	99	84.337	Pteropus_vampyrus
ENSKMAG00000018542	sbds	100	95.582	ENSPNYG00000022403	sbds	100	95.582	Pundamilia_nyererei
ENSKMAG00000018542	sbds	100	91.566	ENSPNAG00000001120	sbds	99	91.566	Pygocentrus_nattereri
ENSKMAG00000018542	sbds	100	83.936	ENSRNOG00000000888	Sbds	99	83.936	Rattus_norvegicus
ENSKMAG00000018542	sbds	100	83.936	ENSRBIG00000035557	SBDS	99	83.936	Rhinopithecus_bieti
ENSKMAG00000018542	sbds	100	83.936	ENSRROG00000040842	-	99	83.936	Rhinopithecus_roxellana
ENSKMAG00000018542	sbds	100	69.478	ENSRROG00000041986	-	99	69.478	Rhinopithecus_roxellana
ENSKMAG00000018542	sbds	96	43.496	YLR022C	-	96	43.496	Saccharomyces_cerevisiae
ENSKMAG00000018542	sbds	93	82.251	ENSSBOG00000022460	SBDS	99	82.251	Saimiri_boliviensis_boliviensis
ENSKMAG00000018542	sbds	100	73.092	ENSSHAG00000010263	SBDS	99	73.092	Sarcophilus_harrisii
ENSKMAG00000018542	sbds	100	91.165	ENSSFOG00015001108	sbds	99	91.165	Scleropages_formosus
ENSKMAG00000018542	sbds	100	93.574	ENSSMAG00000020506	sbds	100	93.574	Scophthalmus_maximus
ENSKMAG00000018542	sbds	100	94.378	ENSSDUG00000001528	sbds	100	94.378	Seriola_dumerili
ENSKMAG00000018542	sbds	100	94.378	ENSSLDG00000003659	sbds	100	94.378	Seriola_lalandi_dorsalis
ENSKMAG00000018542	sbds	73	89.535	ENSSARG00000001899	-	73	89.535	Sorex_araneus
ENSKMAG00000018542	sbds	61	88.235	ENSSARG00000013132	-	100	88.235	Sorex_araneus
ENSKMAG00000018542	sbds	100	84.337	ENSSPUG00000002699	SBDS	99	84.337	Sphenodon_punctatus
ENSKMAG00000018542	sbds	100	96.787	ENSSPAG00000016419	sbds	100	88.800	Stegastes_partitus
ENSKMAG00000018542	sbds	100	83.534	ENSSSCG00000007732	SBDS	99	83.534	Sus_scrofa
ENSKMAG00000018542	sbds	66	87.805	ENSTGUG00000003426	SBDS	99	87.805	Taeniopygia_guttata
ENSKMAG00000018542	sbds	100	95.181	ENSTRUG00000021443	sbds	100	95.181	Takifugu_rubripes
ENSKMAG00000018542	sbds	100	93.976	ENSTNIG00000019000	sbds	100	93.976	Tetraodon_nigroviridis
ENSKMAG00000018542	sbds	84	70.673	ENSTBEG00000001178	SBDS	100	70.673	Tupaia_belangeri
ENSKMAG00000018542	sbds	100	65.863	ENSTTRG00000003921	SBDS	99	65.863	Tursiops_truncatus
ENSKMAG00000018542	sbds	100	84.337	ENSUAMG00000001326	SBDS	99	84.337	Ursus_americanus
ENSKMAG00000018542	sbds	100	84.337	ENSUMAG00000015353	SBDS	99	84.337	Ursus_maritimus
ENSKMAG00000018542	sbds	100	84.337	ENSVVUG00000016478	SBDS	99	84.337	Vulpes_vulpes
ENSKMAG00000018542	sbds	100	85.542	ENSXETG00000010093	sbds	99	85.542	Xenopus_tropicalis
ENSKMAG00000018542	sbds	100	84.337	ENSXCOG00000010639	sbds	100	84.337	Xiphophorus_couchianus
ENSKMAG00000018542	sbds	100	95.181	ENSXMAG00000006065	sbds	100	95.181	Xiphophorus_maculatus