EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000019232 (Gene tree)
Gene ID: 108247289
Gene Symbol: srsf1a
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 2363 bases
Position: chrLWHD01000263.1:250460-252822
Accession: 108247289
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000025948	RRM_1	PF00076.22	2.7e-32	1	2
ENSKMAP00000025948	RRM_1	PF00076.22	2.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000026275	-	958	XM_017435295	ENSKMAP00000025948	246 (aa)	XP_017290784	UPI0007F8938F

Gene Model

Click here to download ENSKMAG00000019232's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG
kmr05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000019232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000019232	srsf1a	65	46.471	ENSKMAG00000020486	srsf5b	82	45.312
ENSKMAG00000019232	srsf1a	96	40.244	ENSKMAG00000013631	srsf4	79	40.496
ENSKMAG00000019232	srsf1a	74	68.508	ENSKMAG00000007113	srsf9	73	68.508
ENSKMAG00000019232	srsf1a	65	46.626	ENSKMAG00000011934	srsf6a	53	46.012
ENSKMAG00000019232	srsf1a	66	42.222	ENSKMAG00000014937	srsf5a	54	42.541

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000019232	srsf1a	98	83.951	ENSG00000136450	SRSF1	95	91.935	Homo_sapiens
ENSKMAG00000019232	srsf1a	78	88.542	ENSAPOG00000008542	-	80	88.442	Acanthochromis_polyacanthus
ENSKMAG00000019232	srsf1a	100	97.967	ENSAPOG00000002748	-	100	97.967	Acanthochromis_polyacanthus
ENSKMAG00000019232	srsf1a	78	88.542	ENSAMEG00000002635	SRSF1	77	89.583	Ailuropoda_melanoleuca
ENSKMAG00000019232	srsf1a	79	97.423	ENSACIG00000008091	srsf1a	83	96.907	Amphilophus_citrinellus
ENSKMAG00000019232	srsf1a	78	88.442	ENSAOCG00000000337	-	80	88.442	Amphiprion_ocellaris
ENSKMAG00000019232	srsf1a	100	98.374	ENSAOCG00000010671	-	100	98.374	Amphiprion_ocellaris
ENSKMAG00000019232	srsf1a	78	88.442	ENSAPEG00000023352	-	79	88.442	Amphiprion_percula
ENSKMAG00000019232	srsf1a	100	98.374	ENSAPEG00000009915	-	100	98.374	Amphiprion_percula
ENSKMAG00000019232	srsf1a	81	87.437	ENSATEG00000021567	-	80	88.083	Anabas_testudineus
ENSKMAG00000019232	srsf1a	79	97.938	ENSATEG00000022403	-	100	97.581	Anabas_testudineus
ENSKMAG00000019232	srsf1a	78	87.565	ENSACAG00000005542	-	78	91.192	Anolis_carolinensis
ENSKMAG00000019232	srsf1a	79	68.205	ENSANAG00000025417	-	73	67.188	Aotus_nancymaae
ENSKMAG00000019232	srsf1a	98	83.951	ENSANAG00000020583	-	93	91.176	Aotus_nancymaae
ENSKMAG00000019232	srsf1a	95	80.335	ENSAMXG00000035996	srsf1a	79	88.889	Astyanax_mexicanus
ENSKMAG00000019232	srsf1a	54	78.065	ENSAMXG00000024373	-	72	78.065	Astyanax_mexicanus
ENSKMAG00000019232	srsf1a	98	83.951	ENSBTAG00000014766	SRSF1	78	92.228	Bos_taurus
ENSKMAG00000019232	srsf1a	98	83.951	ENSCJAG00000041713	-	93	91.176	Callithrix_jacchus
ENSKMAG00000019232	srsf1a	78	81.865	ENSCJAG00000008111	-	86	84.974	Callithrix_jacchus
ENSKMAG00000019232	srsf1a	98	83.951	ENSCAFG00000017430	SRSF1	76	92.228	Canis_familiaris
ENSKMAG00000019232	srsf1a	98	83.951	ENSCAFG00020025632	-	76	92.228	Canis_lupus_dingo
ENSKMAG00000019232	srsf1a	78	88.601	ENSCHIG00000010787	SRSF1	78	92.228	Capra_hircus
ENSKMAG00000019232	srsf1a	98	83.951	ENSTSYG00000013899	-	93	91.176	Carlito_syrichta
ENSKMAG00000019232	srsf1a	98	83.951	ENSCPOG00000032681	-	78	92.228	Cavia_porcellus
ENSKMAG00000019232	srsf1a	98	83.951	ENSCCAG00000029484	-	93	91.176	Cebus_capucinus
ENSKMAG00000019232	srsf1a	98	83.951	ENSCATG00000042294	-	93	91.176	Cercocebus_atys
ENSKMAG00000019232	srsf1a	98	83.951	ENSCLAG00000014707	-	78	92.228	Chinchilla_lanigera
ENSKMAG00000019232	srsf1a	98	83.128	ENSCSAG00000005642	-	76	91.192	Chlorocebus_sabaeus
ENSKMAG00000019232	srsf1a	78	88.601	ENSCHOG00000001899	SRSF1	78	92.228	Choloepus_hoffmanni
ENSKMAG00000019232	srsf1a	98	83.539	ENSCPBG00000009851	-	78	91.710	Chrysemys_picta_bellii
ENSKMAG00000019232	srsf1a	98	83.951	ENSCANG00000029726	-	93	91.176	Colobus_angolensis_palliatus
ENSKMAG00000019232	srsf1a	98	83.951	ENSCGRG00001000670	Srsf1	76	92.228	Cricetulus_griseus_chok1gshd
ENSKMAG00000019232	srsf1a	98	83.951	ENSCGRG00000005590	Srsf1	78	92.228	Cricetulus_griseus_crigri
ENSKMAG00000019232	srsf1a	78	81.731	ENSCSEG00000009973	-	79	81.731	Cynoglossus_semilaevis
ENSKMAG00000019232	srsf1a	100	96.400	ENSCSEG00000014272	-	100	96.400	Cynoglossus_semilaevis
ENSKMAG00000019232	srsf1a	100	98.780	ENSCVAG00000018617	-	100	98.780	Cyprinodon_variegatus
ENSKMAG00000019232	srsf1a	78	87.113	ENSCVAG00000005458	-	90	86.813	Cyprinodon_variegatus
ENSKMAG00000019232	srsf1a	78	84.236	ENSDARG00000057691	srsf1a	99	85.864	Danio_rerio
ENSKMAG00000019232	srsf1a	78	89.119	ENSDARG00000017843	srsf1b	79	92.228	Danio_rerio
ENSKMAG00000019232	srsf1a	98	83.951	ENSDNOG00000011737	-	76	92.228	Dasypus_novemcinctus
ENSKMAG00000019232	srsf1a	98	83.951	ENSDORG00000015082	Srsf1	78	92.228	Dipodomys_ordii
ENSKMAG00000019232	srsf1a	73	89.444	ENSETEG00000005349	-	62	89.444	Echinops_telfairi
ENSKMAG00000019232	srsf1a	98	83.951	ENSEASG00005002922	-	76	92.228	Equus_asinus_asinus
ENSKMAG00000019232	srsf1a	78	88.601	ENSECAG00000016654	SRSF1	78	92.228	Equus_caballus
ENSKMAG00000019232	srsf1a	73	90.556	ENSEEUG00000009255	-	62	90.556	Erinaceus_europaeus
ENSKMAG00000019232	srsf1a	78	94.271	ENSELUG00000021646	srsf1a	76	94.271	Esox_lucius
ENSKMAG00000019232	srsf1a	98	83.951	ENSFCAG00000002250	-	90	90.055	Felis_catus
ENSKMAG00000019232	srsf1a	76	94.340	ENSFALG00000005062	-	76	73.057	Ficedula_albicollis
ENSKMAG00000019232	srsf1a	98	83.951	ENSFDAG00000010646	-	78	92.228	Fukomys_damarensis
ENSKMAG00000019232	srsf1a	100	99.187	ENSFHEG00000003174	srsf1a	100	99.187	Fundulus_heteroclitus
ENSKMAG00000019232	srsf1a	80	88.832	ENSGMOG00000014787	-	80	88.021	Gadus_morhua
ENSKMAG00000019232	srsf1a	78	88.083	ENSGALG00000005525	SRSF1	78	91.710	Gallus_gallus
ENSKMAG00000019232	srsf1a	78	85.938	ENSGACG00000020621	srsf1b	78	85.417	Gasterosteus_aculeatus
ENSKMAG00000019232	srsf1a	98	83.539	ENSGAGG00000022965	-	76	91.710	Gopherus_agassizii
ENSKMAG00000019232	srsf1a	98	83.951	ENSGGOG00000004386	SRSF1	93	91.176	Gorilla_gorilla
ENSKMAG00000019232	srsf1a	100	97.967	ENSHBUG00000016788	srsf1a	100	97.967	Haplochromis_burtoni
ENSKMAG00000019232	srsf1a	66	87.805	ENSHGLG00000000600	-	76	92.073	Heterocephalus_glaber_female
ENSKMAG00000019232	srsf1a	66	87.805	ENSHGLG00000000669	-	76	92.073	Heterocephalus_glaber_female
ENSKMAG00000019232	srsf1a	98	83.951	ENSHGLG00100016906	-	78	92.228	Heterocephalus_glaber_male
ENSKMAG00000019232	srsf1a	79	89.447	ENSHCOG00000018918	srsf1a	78	92.462	Hippocampus_comes
ENSKMAG00000019232	srsf1a	79	86.070	ENSIPUG00000017039	srsf1a	80	88.557	Ictalurus_punctatus
ENSKMAG00000019232	srsf1a	78	92.708	ENSIPUG00000008750	srsf1b	78	92.708	Ictalurus_punctatus
ENSKMAG00000019232	srsf1a	98	83.951	ENSSTOG00000000243	-	91	90.055	Ictidomys_tridecemlineatus
ENSKMAG00000019232	srsf1a	50	85.246	ENSJJAG00000014464	-	92	84.553	Jaculus_jaculus
ENSKMAG00000019232	srsf1a	98	83.951	ENSJJAG00000000102	-	78	92.228	Jaculus_jaculus
ENSKMAG00000019232	srsf1a	100	97.561	ENSLBEG00000020864	-	100	97.561	Labrus_bergylta
ENSKMAG00000019232	srsf1a	78	80.612	ENSLBEG00000015294	-	79	81.633	Labrus_bergylta
ENSKMAG00000019232	srsf1a	78	89.062	ENSLACG00000014160	srsf1a	72	89.062	Latimeria_chalumnae
ENSKMAG00000019232	srsf1a	78	92.188	ENSLOCG00000005994	srsf1a	78	92.188	Lepisosteus_oculatus
ENSKMAG00000019232	srsf1a	78	88.601	ENSLAFG00000025743	SRSF1	78	92.228	Loxodonta_africana
ENSKMAG00000019232	srsf1a	98	83.951	ENSMFAG00000040003	-	93	91.176	Macaca_fascicularis
ENSKMAG00000019232	srsf1a	98	83.951	ENSMMUG00000004725	SRSF1	93	91.176	Macaca_mulatta
ENSKMAG00000019232	srsf1a	99	81.148	ENSMMUG00000003260	-	93	88.021	Macaca_mulatta
ENSKMAG00000019232	srsf1a	98	83.951	ENSMNEG00000027680	-	93	91.176	Macaca_nemestrina
ENSKMAG00000019232	srsf1a	99	81.557	ENSMNEG00000015983	-	76	88.601	Macaca_nemestrina
ENSKMAG00000019232	srsf1a	78	88.601	ENSMLEG00000040509	SRSF1	78	92.228	Mandrillus_leucophaeus
ENSKMAG00000019232	srsf1a	98	83.058	ENSMLEG00000015243	-	76	87.500	Mandrillus_leucophaeus
ENSKMAG00000019232	srsf1a	78	89.583	ENSMAMG00000019687	-	78	89.062	Mastacembelus_armatus
ENSKMAG00000019232	srsf1a	100	98.374	ENSMAMG00000018454	-	100	98.374	Mastacembelus_armatus
ENSKMAG00000019232	srsf1a	78	92.708	ENSMAMG00000019691	-	80	92.708	Mastacembelus_armatus
ENSKMAG00000019232	srsf1a	98	83.951	ENSMAUG00000021845	Srsf1	78	92.228	Mesocricetus_auratus
ENSKMAG00000019232	srsf1a	98	83.951	ENSMICG00000013639	-	93	91.176	Microcebus_murinus
ENSKMAG00000019232	srsf1a	98	83.951	ENSMOCG00000001996	Srsf1	78	92.228	Microtus_ochrogaster
ENSKMAG00000019232	srsf1a	79	96.392	ENSMMOG00000014354	srsf1a	84	95.876	Mola_mola
ENSKMAG00000019232	srsf1a	73	91.160	ENSMODG00000014781	-	62	92.265	Monodelphis_domestica
ENSKMAG00000019232	srsf1a	79	98.454	ENSMALG00000017129	-	76	96.907	Monopterus_albus
ENSKMAG00000019232	srsf1a	81	77.889	ENSMALG00000007763	-	77	81.771	Monopterus_albus
ENSKMAG00000019232	srsf1a	98	83.951	MGP_CAROLIEiJ_G0016943	Srsf1	90	90.055	Mus_caroli
ENSKMAG00000019232	srsf1a	98	83.951	ENSMUSG00000018379	Srsf1	90	90.055	Mus_musculus
ENSKMAG00000019232	srsf1a	98	83.951	MGP_PahariEiJ_G0018074	Srsf1	74	97.436	Mus_pahari
ENSKMAG00000019232	srsf1a	98	83.951	MGP_SPRETEiJ_G0017790	Srsf1	90	90.055	Mus_spretus
ENSKMAG00000019232	srsf1a	78	88.601	ENSMPUG00000015369	SRSF1	78	92.228	Mustela_putorius_furo
ENSKMAG00000019232	srsf1a	80	86.869	ENSMLUG00000023995	-	77	86.979	Myotis_lucifugus
ENSKMAG00000019232	srsf1a	78	88.601	ENSMLUG00000011040	SRSF1	78	92.228	Myotis_lucifugus
ENSKMAG00000019232	srsf1a	78	88.601	ENSNGAG00000011395	Srsf1	78	92.228	Nannospalax_galili
ENSKMAG00000019232	srsf1a	99	75.000	ENSNBRG00000008041	srsf1b	78	81.250	Neolamprologus_brichardi
ENSKMAG00000019232	srsf1a	98	83.951	ENSNLEG00000008088	-	93	91.176	Nomascus_leucogenys
ENSKMAG00000019232	srsf1a	53	86.364	ENSOPRG00000001234	-	72	91.667	Ochotona_princeps
ENSKMAG00000019232	srsf1a	98	83.951	ENSODEG00000011481	-	78	92.228	Octodon_degus
ENSKMAG00000019232	srsf1a	79	91.795	ENSONIG00000004860	-	79	91.667	Oreochromis_niloticus
ENSKMAG00000019232	srsf1a	100	97.967	ENSONIG00000013160	-	99	97.967	Oreochromis_niloticus
ENSKMAG00000019232	srsf1a	99	63.968	ENSOCUG00000010894	-	75	72.632	Oryctolagus_cuniculus
ENSKMAG00000019232	srsf1a	100	98.374	ENSORLG00000004580	srsf1a	100	98.374	Oryzias_latipes
ENSKMAG00000019232	srsf1a	100	98.374	ENSORLG00020009456	srsf1a	100	98.374	Oryzias_latipes_hni
ENSKMAG00000019232	srsf1a	100	97.967	ENSORLG00015014384	srsf1a	100	97.967	Oryzias_latipes_hsok
ENSKMAG00000019232	srsf1a	92	96.476	ENSOMEG00000004106	srsf1a	93	96.476	Oryzias_melastigma
ENSKMAG00000019232	srsf1a	83	89.216	ENSOGAG00000025950	-	78	92.228	Otolemur_garnettii
ENSKMAG00000019232	srsf1a	78	88.542	ENSOARG00000008323	SRSF1	77	88.542	Ovis_aries
ENSKMAG00000019232	srsf1a	98	83.951	ENSPPAG00000043403	-	93	91.176	Pan_paniscus
ENSKMAG00000019232	srsf1a	98	83.951	ENSPPRG00000004238	-	90	90.055	Panthera_pardus
ENSKMAG00000019232	srsf1a	98	83.951	ENSPTRG00000049077	SRSF1	93	91.176	Pan_troglodytes
ENSKMAG00000019232	srsf1a	99	67.480	ENSPANG00000030275	-	75	67.692	Papio_anubis
ENSKMAG00000019232	srsf1a	98	83.951	ENSPANG00000022305	-	93	91.176	Papio_anubis
ENSKMAG00000019232	srsf1a	78	90.155	ENSPKIG00000007204	srsf1a	83	91.192	Paramormyrops_kingsleyae
ENSKMAG00000019232	srsf1a	78	92.708	ENSPKIG00000012857	srsf1b	78	92.708	Paramormyrops_kingsleyae
ENSKMAG00000019232	srsf1a	78	80.829	ENSPSIG00000009000	-	72	90.977	Pelodiscus_sinensis
ENSKMAG00000019232	srsf1a	96	83.122	ENSPMGG00000005467	-	79	87.113	Periophthalmus_magnuspinnatus
ENSKMAG00000019232	srsf1a	100	96.429	ENSPMGG00000013112	-	100	96.429	Periophthalmus_magnuspinnatus
ENSKMAG00000019232	srsf1a	98	83.951	ENSPEMG00000021416	Srsf1	78	92.228	Peromyscus_maniculatus_bairdii
ENSKMAG00000019232	srsf1a	78	89.175	ENSPCIG00000006076	-	78	92.268	Phascolarctos_cinereus
ENSKMAG00000019232	srsf1a	79	87.310	ENSPFOG00000018325	-	69	87.565	Poecilia_formosa
ENSKMAG00000019232	srsf1a	79	87.310	ENSPLAG00000008416	srsf1b	78	87.565	Poecilia_latipinna
ENSKMAG00000019232	srsf1a	50	97.581	ENSPMEG00000020607	-	99	97.581	Poecilia_mexicana
ENSKMAG00000019232	srsf1a	50	97.581	ENSPMEG00000014312	-	99	97.581	Poecilia_mexicana
ENSKMAG00000019232	srsf1a	79	87.310	ENSPMEG00000002388	-	78	87.565	Poecilia_mexicana
ENSKMAG00000019232	srsf1a	100	98.780	ENSPREG00000009667	srsf1a	100	98.780	Poecilia_reticulata
ENSKMAG00000019232	srsf1a	98	83.951	ENSPPYG00000008240	SRSF1	78	92.228	Pongo_abelii
ENSKMAG00000019232	srsf1a	78	88.601	ENSPCAG00000005199	SRSF1	78	92.228	Procavia_capensis
ENSKMAG00000019232	srsf1a	98	83.951	ENSPCOG00000023654	-	93	91.176	Propithecus_coquereli
ENSKMAG00000019232	srsf1a	79	73.232	ENSPCOG00000025736	-	93	72.449	Propithecus_coquereli
ENSKMAG00000019232	srsf1a	53	97.143	ENSPVAG00000000519	-	53	97.143	Pteropus_vampyrus
ENSKMAG00000019232	srsf1a	95	83.691	ENSPNAG00000022241	srsf1a	78	90.625	Pygocentrus_nattereri
ENSKMAG00000019232	srsf1a	78	91.667	ENSPNAG00000014601	srsf1b	78	91.667	Pygocentrus_nattereri
ENSKMAG00000019232	srsf1a	78	88.601	ENSRNOG00000050323	Srsf1	78	92.228	Rattus_norvegicus
ENSKMAG00000019232	srsf1a	98	83.951	ENSRBIG00000034445	-	93	91.176	Rhinopithecus_bieti
ENSKMAG00000019232	srsf1a	98	83.951	ENSRROG00000041506	-	93	91.176	Rhinopithecus_roxellana
ENSKMAG00000019232	srsf1a	98	83.951	ENSSBOG00000025377	-	93	91.176	Saimiri_boliviensis_boliviensis
ENSKMAG00000019232	srsf1a	78	89.175	ENSSHAG00000002552	-	78	92.268	Sarcophilus_harrisii
ENSKMAG00000019232	srsf1a	78	92.188	ENSSFOG00015004800	srsf1a	77	92.708	Scleropages_formosus
ENSKMAG00000019232	srsf1a	78	85.500	ENSSMAG00000009719	-	78	85.500	Scophthalmus_maximus
ENSKMAG00000019232	srsf1a	100	96.341	ENSSMAG00000007018	-	100	96.341	Scophthalmus_maximus
ENSKMAG00000019232	srsf1a	100	97.561	ENSSDUG00000011303	-	100	97.561	Seriola_dumerili
ENSKMAG00000019232	srsf1a	99	73.387	ENSSDUG00000003929	-	83	80.303	Seriola_dumerili
ENSKMAG00000019232	srsf1a	100	97.561	ENSSLDG00000010543	-	100	97.561	Seriola_lalandi_dorsalis
ENSKMAG00000019232	srsf1a	78	78.756	ENSSLDG00000016868	-	76	78.238	Seriola_lalandi_dorsalis
ENSKMAG00000019232	srsf1a	74	82.609	ENSSLDG00000016895	-	77	83.696	Seriola_lalandi_dorsalis
ENSKMAG00000019232	srsf1a	73	90.556	ENSSARG00000010949	-	62	90.556	Sorex_araneus
ENSKMAG00000019232	srsf1a	98	83.539	ENSSPUG00000000804	-	91	89.503	Sphenodon_punctatus
ENSKMAG00000019232	srsf1a	78	84.951	ENSSPAG00000014152	-	80	84.951	Stegastes_partitus
ENSKMAG00000019232	srsf1a	100	98.374	ENSSPAG00000022562	-	100	98.374	Stegastes_partitus
ENSKMAG00000019232	srsf1a	98	83.951	ENSSSCG00000017626	-	78	92.228	Sus_scrofa
ENSKMAG00000019232	srsf1a	54	85.714	ENSTGUG00000008416	-	72	90.977	Taeniopygia_guttata
ENSKMAG00000019232	srsf1a	100	97.561	ENSTRUG00000003691	srsf1a	100	97.561	Takifugu_rubripes
ENSKMAG00000019232	srsf1a	100	97.561	ENSTNIG00000016223	srsf1a	99	97.561	Tetraodon_nigroviridis
ENSKMAG00000019232	srsf1a	73	86.667	ENSTBEG00000015378	-	62	91.111	Tupaia_belangeri
ENSKMAG00000019232	srsf1a	53	86.364	ENSTTRG00000007310	SRSF1	72	91.667	Tursiops_truncatus
ENSKMAG00000019232	srsf1a	78	88.601	ENSUAMG00000009858	SRSF1	78	92.228	Ursus_americanus
ENSKMAG00000019232	srsf1a	98	83.951	ENSUMAG00000000455	-	76	92.228	Ursus_maritimus
ENSKMAG00000019232	srsf1a	78	88.083	ENSVPAG00000010094	SRSF1	78	91.710	Vicugna_pacos
ENSKMAG00000019232	srsf1a	98	83.951	ENSVVUG00000011882	-	76	92.228	Vulpes_vulpes
ENSKMAG00000019232	srsf1a	78	88.021	ENSXETG00000008954	srsf1	79	84.434	Xenopus_tropicalis
ENSKMAG00000019232	srsf1a	100	98.780	ENSXMAG00000011766	srsf1a	100	98.780	Xiphophorus_maculatus