EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000019292 (Gene tree)
Gene ID: -
Gene Symbol: chd3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 45141 bases
Position: chrLWHD01000296.1:198659-243799
Accession: 108247786
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000026145	ResIII	PF04851.15	9.9e-08	1	1
ENSKMAP00000026230	ResIII	PF04851.15	3.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000026561	-	5436	-	ENSKMAP00000026230	1811 (aa)	-	-
ENSKMAT00000026474	-	5361	XM_017436149	ENSKMAP00000026145	1786 (aa)	XP_017291638	-

Gene Model

Click here to download ENSKMAG00000019292's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000019292's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000019292	chd3	87	66.274	ENSKMAG00000007932	-	82	79.612
ENSKMAG00000019292	chd3	92	67.506	ENSKMAG00000019286	chd4a	96	66.859
ENSKMAG00000019292	chd3	93	70.058	ENSKMAG00000017827	-	87	86.634

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000019292	chd3	97	75.903	ENSG00000170004	CHD3	86	89.573	Homo_sapiens
ENSKMAG00000019292	chd3	87	87.624	ENSAPOG00000005614	chd3	97	87.860	Acanthochromis_polyacanthus
ENSKMAG00000019292	chd3	69	75.678	ENSAMEG00000003025	-	92	83.658	Ailuropoda_melanoleuca
ENSKMAG00000019292	chd3	87	88.320	ENSACIG00000019671	chd3	97	97.279	Amphilophus_citrinellus
ENSKMAG00000019292	chd3	96	98.500	ENSAOCG00000023784	chd3	99	89.644	Amphiprion_ocellaris
ENSKMAG00000019292	chd3	96	98.500	ENSAPEG00000006341	chd3	91	93.333	Amphiprion_percula
ENSKMAG00000019292	chd3	93	97.500	ENSATEG00000000848	chd3	92	97.279	Anabas_testudineus
ENSKMAG00000019292	chd3	91	90.995	ENSACAG00000004276	CHD3	79	90.995	Anolis_carolinensis
ENSKMAG00000019292	chd3	97	74.362	ENSANAG00000034323	CHD3	87	90.047	Aotus_nancymaae
ENSKMAG00000019292	chd3	100	91.331	ENSACLG00000009222	chd3	99	91.331	Astatotilapia_calliptera
ENSKMAG00000019292	chd3	97	74.563	ENSBTAG00000014377	CHD3	86	90.521	Bos_taurus
ENSKMAG00000019292	chd3	97	75.957	ENSCJAG00000014766	CHD3	86	90.047	Callithrix_jacchus
ENSKMAG00000019292	chd3	97	74.682	ENSCAFG00000016859	CHD3	85	90.047	Canis_familiaris
ENSKMAG00000019292	chd3	97	76.095	ENSCAFG00020007422	CHD3	89	90.047	Canis_lupus_dingo
ENSKMAG00000019292	chd3	97	74.590	ENSCHIG00000016737	CHD3	86	90.047	Capra_hircus
ENSKMAG00000019292	chd3	97	75.862	ENSTSYG00000035658	CHD3	86	90.047	Carlito_syrichta
ENSKMAG00000019292	chd3	97	72.149	ENSCAPG00000014864	CHD3	85	90.047	Cavia_aperea
ENSKMAG00000019292	chd3	97	74.127	ENSCPOG00000022653	CHD3	85	90.047	Cavia_porcellus
ENSKMAG00000019292	chd3	97	75.903	ENSCCAG00000034792	CHD3	85	90.047	Cebus_capucinus
ENSKMAG00000019292	chd3	97	75.795	ENSCATG00000041717	CHD3	86	90.047	Cercocebus_atys
ENSKMAG00000019292	chd3	97	75.795	ENSCLAG00000010523	CHD3	86	90.047	Chinchilla_lanigera
ENSKMAG00000019292	chd3	97	74.523	ENSCSAG00000011122	CHD3	86	90.047	Chlorocebus_sabaeus
ENSKMAG00000019292	chd3	90	77.540	ENSCPBG00000011966	CHD3	92	95.238	Chrysemys_picta_bellii
ENSKMAG00000019292	chd3	97	75.741	ENSCANG00000037641	CHD3	87	90.047	Colobus_angolensis_palliatus
ENSKMAG00000019292	chd3	90	90.047	ENSCGRG00001011306	Chd3	85	90.047	Cricetulus_griseus_chok1gshd
ENSKMAG00000019292	chd3	97	70.261	ENSCGRG00000007878	Chd3	94	69.519	Cricetulus_griseus_crigri
ENSKMAG00000019292	chd3	100	89.231	ENSCSEG00000004489	chd3	99	89.077	Cynoglossus_semilaevis
ENSKMAG00000019292	chd3	93	91.141	ENSCVAG00000007293	chd3	99	86.918	Cyprinodon_variegatus
ENSKMAG00000019292	chd3	100	85.393	ENSDARG00000021405	chd3	99	85.887	Danio_rerio
ENSKMAG00000019292	chd3	88	73.190	ENSDNOG00000047846	CHD3	81	84.926	Dasypus_novemcinctus
ENSKMAG00000019292	chd3	97	75.607	ENSDORG00000010713	Chd3	88	90.047	Dipodomys_ordii
ENSKMAG00000019292	chd3	90	88.626	ENSETEG00000017733	CHD3	85	88.626	Echinops_telfairi
ENSKMAG00000019292	chd3	74	73.462	ENSEBUG00000008310	chd3	83	87.000	Eptatretus_burgeri
ENSKMAG00000019292	chd3	95	75.027	ENSEASG00005019360	CHD3	87	90.047	Equus_asinus_asinus
ENSKMAG00000019292	chd3	95	75.027	ENSECAG00000010051	CHD3	87	90.047	Equus_caballus
ENSKMAG00000019292	chd3	85	92.632	ENSEEUG00000015205	CHD3	77	93.902	Erinaceus_europaeus
ENSKMAG00000019292	chd3	83	95.918	ENSELUG00000019499	chd3	99	95.918	Esox_lucius
ENSKMAG00000019292	chd3	97	74.814	ENSFCAG00000009629	CHD3	80	89.100	Felis_catus
ENSKMAG00000019292	chd3	97	74.562	ENSFDAG00000008220	CHD3	82	90.047	Fukomys_damarensis
ENSKMAG00000019292	chd3	90	95.699	ENSGMOG00000013599	chd3	84	95.699	Gadus_morhua
ENSKMAG00000019292	chd3	62	88.194	ENSGAFG00000004055	chd3	99	92.342	Gambusia_affinis
ENSKMAG00000019292	chd3	95	95.567	ENSGACG00000019275	chd3	96	88.644	Gasterosteus_aculeatus
ENSKMAG00000019292	chd3	76	76.812	ENSGAGG00000013164	CHD3	88	86.047	Gopherus_agassizii
ENSKMAG00000019292	chd3	97	75.849	ENSGGOG00000013496	CHD3	87	90.047	Gorilla_gorilla
ENSKMAG00000019292	chd3	97	75.580	ENSHGLG00000012017	CHD3	86	90.047	Heterocephalus_glaber_female
ENSKMAG00000019292	chd3	86	67.732	ENSHGLG00100013902	CHD3	88	83.333	Heterocephalus_glaber_male
ENSKMAG00000019292	chd3	96	96.569	ENSHCOG00000010170	chd3	85	96.569	Hippocampus_comes
ENSKMAG00000019292	chd3	93	80.269	ENSIPUG00000003271	chd3	96	79.559	Ictalurus_punctatus
ENSKMAG00000019292	chd3	97	75.985	ENSSTOG00000025907	CHD3	86	90.047	Ictidomys_tridecemlineatus
ENSKMAG00000019292	chd3	97	75.795	ENSJJAG00000017633	Chd3	86	90.047	Jaculus_jaculus
ENSKMAG00000019292	chd3	99	82.388	ENSLBEG00000028485	chd3	90	89.912	Labrus_bergylta
ENSKMAG00000019292	chd3	96	72.009	ENSLACG00000008031	CHD3	90	80.357	Latimeria_chalumnae
ENSKMAG00000019292	chd3	100	82.708	ENSLOCG00000013965	chd3	88	87.540	Lepisosteus_oculatus
ENSKMAG00000019292	chd3	88	92.574	ENSLAFG00000000572	CHD3	83	92.574	Loxodonta_africana
ENSKMAG00000019292	chd3	97	75.795	ENSMFAG00000020113	CHD3	87	90.047	Macaca_fascicularis
ENSKMAG00000019292	chd3	97	73.830	ENSMMUG00000022221	CHD3	86	90.047	Macaca_mulatta
ENSKMAG00000019292	chd3	97	75.795	ENSMNEG00000001728	CHD3	87	90.047	Macaca_nemestrina
ENSKMAG00000019292	chd3	97	75.795	ENSMLEG00000032249	CHD3	86	90.047	Mandrillus_leucophaeus
ENSKMAG00000019292	chd3	87	87.614	ENSMAMG00000000564	chd3	99	85.397	Mastacembelus_armatus
ENSKMAG00000019292	chd3	88	90.047	ENSMAUG00000013873	Chd3	87	90.047	Mesocricetus_auratus
ENSKMAG00000019292	chd3	97	74.801	ENSMICG00000008741	CHD3	85	90.047	Microcebus_murinus
ENSKMAG00000019292	chd3	97	75.054	ENSMOCG00000004848	Chd3	85	90.047	Microtus_ochrogaster
ENSKMAG00000019292	chd3	98	85.427	ENSMMOG00000012699	chd3	92	98.039	Mola_mola
ENSKMAG00000019292	chd3	95	75.570	ENSMODG00000007509	CHD3	90	89.100	Monodelphis_domestica
ENSKMAG00000019292	chd3	97	75.633	MGP_CAROLIEiJ_G0016564	Chd3	87	90.047	Mus_caroli
ENSKMAG00000019292	chd3	97	75.511	ENSMUSG00000018474	Chd3	87	90.047	Mus_musculus
ENSKMAG00000019292	chd3	97	75.660	MGP_PahariEiJ_G0017695	Chd3	87	90.047	Mus_pahari
ENSKMAG00000019292	chd3	97	75.565	MGP_SPRETEiJ_G0017400	Chd3	87	90.047	Mus_spretus
ENSKMAG00000019292	chd3	89	75.350	ENSMPUG00000008861	CHD3	86	89.573	Mustela_putorius_furo
ENSKMAG00000019292	chd3	100	73.275	ENSMLUG00000014643	-	82	89.573	Myotis_lucifugus
ENSKMAG00000019292	chd3	90	90.047	ENSNGAG00000000773	Chd3	82	90.047	Nannospalax_galili
ENSKMAG00000019292	chd3	88	86.941	ENSNBRG00000000636	chd3	97	87.002	Neolamprologus_brichardi
ENSKMAG00000019292	chd3	96	74.834	ENSNLEG00000009770	CHD3	89	88.626	Nomascus_leucogenys
ENSKMAG00000019292	chd3	80	89.573	ENSMEUG00000005852	CHD3	77	89.573	Notamacropus_eugenii
ENSKMAG00000019292	chd3	97	74.267	ENSOPRG00000011069	CHD3	87	90.047	Ochotona_princeps
ENSKMAG00000019292	chd3	97	74.590	ENSODEG00000017785	CHD3	83	90.047	Octodon_degus
ENSKMAG00000019292	chd3	93	98.000	ENSONIG00000009292	chd3	88	98.020	Oreochromis_niloticus
ENSKMAG00000019292	chd3	97	71.012	ENSOCUG00000029299	CHD3	90	75.051	Oryctolagus_cuniculus
ENSKMAG00000019292	chd3	79	90.028	ENSORLG00000007107	chd3	87	90.516	Oryzias_latipes
ENSKMAG00000019292	chd3	61	84.358	ENSORLG00020008387	chd3	95	85.081	Oryzias_latipes_hni
ENSKMAG00000019292	chd3	88	87.158	ENSOMEG00000013691	chd3	99	87.226	Oryzias_melastigma
ENSKMAG00000019292	chd3	97	74.576	ENSOGAG00000003216	CHD3	86	90.047	Otolemur_garnettii
ENSKMAG00000019292	chd3	97	73.575	ENSOARG00000017855	CHD3	85	84.977	Ovis_aries
ENSKMAG00000019292	chd3	97	74.098	ENSPPAG00000032886	CHD3	86	92.574	Pan_paniscus
ENSKMAG00000019292	chd3	97	75.985	ENSPPRG00000000626	CHD3	87	89.573	Panthera_pardus
ENSKMAG00000019292	chd3	97	75.903	ENSPTRG00000008714	CHD3	87	90.047	Pan_troglodytes
ENSKMAG00000019292	chd3	97	74.629	ENSPANG00000023938	CHD3	87	90.047	Papio_anubis
ENSKMAG00000019292	chd3	95	90.179	ENSPKIG00000006305	chd3	89	94.554	Paramormyrops_kingsleyae
ENSKMAG00000019292	chd3	59	78.962	ENSPSIG00000010177	CHD3	98	78.150	Pelodiscus_sinensis
ENSKMAG00000019292	chd3	90	90.047	ENSPEMG00000014262	Chd3	83	90.047	Peromyscus_maniculatus_bairdii
ENSKMAG00000019292	chd3	90	91.837	ENSPCIG00000005442	CHD3	93	92.079	Phascolarctos_cinereus
ENSKMAG00000019292	chd3	98	89.878	ENSPFOG00000012464	chd3	80	99.010	Poecilia_formosa
ENSKMAG00000019292	chd3	99	86.175	ENSPLAG00000002887	chd3	99	86.175	Poecilia_latipinna
ENSKMAG00000019292	chd3	56	89.498	ENSPMEG00000016725	chd3	91	87.444	Poecilia_mexicana
ENSKMAG00000019292	chd3	98	90.702	ENSPREG00000011044	chd3	97	90.869	Poecilia_reticulata
ENSKMAG00000019292	chd3	99	71.614	ENSPPYG00000007940	CHD3	83	90.047	Pongo_abelii
ENSKMAG00000019292	chd3	93	76.816	ENSPCAG00000004350	CHD3	84	86.486	Procavia_capensis
ENSKMAG00000019292	chd3	97	75.590	ENSPCOG00000020952	CHD3	85	90.047	Propithecus_coquereli
ENSKMAG00000019292	chd3	83	73.045	ENSPVAG00000016344	CHD3	70	90.047	Pteropus_vampyrus
ENSKMAG00000019292	chd3	100	83.721	ENSPNAG00000020393	chd3	94	96.535	Pygocentrus_nattereri
ENSKMAG00000019292	chd3	95	74.417	ENSRNOG00000009722	Chd3	87	90.047	Rattus_norvegicus
ENSKMAG00000019292	chd3	97	73.684	ENSRBIG00000033562	CHD3	87	90.047	Rhinopithecus_bieti
ENSKMAG00000019292	chd3	97	75.795	ENSRROG00000029554	CHD3	87	90.047	Rhinopithecus_roxellana
ENSKMAG00000019292	chd3	97	75.957	ENSSBOG00000020719	CHD3	87	90.047	Saimiri_boliviensis_boliviensis
ENSKMAG00000019292	chd3	97	75.636	ENSSHAG00000014412	CHD3	96	74.756	Sarcophilus_harrisii
ENSKMAG00000019292	chd3	89	82.583	ENSSFOG00015023123	chd3	86	97.525	Scleropages_formosus
ENSKMAG00000019292	chd3	95	89.619	ENSSMAG00000006451	chd3	92	97.959	Scophthalmus_maximus
ENSKMAG00000019292	chd3	59	84.422	ENSSDUG00000005792	chd3	96	86.406	Seriola_dumerili
ENSKMAG00000019292	chd3	94	98.500	ENSSPAG00000013694	chd3	95	97.959	Stegastes_partitus
ENSKMAG00000019292	chd3	97	74.656	ENSSSCG00000021363	CHD3	90	92.517	Sus_scrofa
ENSKMAG00000019292	chd3	81	88.904	ENSTRUG00000014990	chd3	90	90.148	Takifugu_rubripes
ENSKMAG00000019292	chd3	99	84.550	ENSTNIG00000012998	chd3	98	82.455	Tetraodon_nigroviridis
ENSKMAG00000019292	chd3	63	93.902	ENSTBEG00000011454	-	66	93.902	Tupaia_belangeri
ENSKMAG00000019292	chd3	96	75.788	ENSTTRG00000010295	CHD3	80	89.573	Tursiops_truncatus
ENSKMAG00000019292	chd3	95	73.835	ENSUAMG00000005475	CHD3	87	90.047	Ursus_americanus
ENSKMAG00000019292	chd3	55	91.304	ENSVPAG00000010794	-	55	96.078	Vicugna_pacos
ENSKMAG00000019292	chd3	97	74.867	ENSVVUG00000028011	CHD3	86	90.047	Vulpes_vulpes
ENSKMAG00000019292	chd3	99	71.350	ENSXETG00000012991	chd3	80	89.573	Xenopus_tropicalis
ENSKMAG00000019292	chd3	58	90.282	ENSXCOG00000000809	chd3	93	91.573	Xiphophorus_couchianus
ENSKMAG00000019292	chd3	87	88.722	ENSXMAG00000016035	chd3	98	98.639	Xiphophorus_maculatus