EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000019507 (Gene tree)
Gene ID: 108228547
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 6722 bases
Position: chrLWHD01001330.1:12246-18967
Accession: 108228547
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000026336	Btz	PF09405.10	2.8e-21	1	1
ENSKMAP00000026324	Btz	PF09405.10	1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000026673	-	2226	XM_025003269	ENSKMAP00000026336	741 (aa)	XP_024859037	-
ENSKMAT00000026660	-	1929	-	ENSKMAP00000026324	642 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000019507's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03013	RNA transport	KEGG
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000019507's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000019507	casc3	81	48.511	ENSG00000108349	CASC3	80	60.112	Homo_sapiens
ENSKMAG00000019507	casc3	99	70.227	ENSAPOG00000008467	casc3	100	61.190	Acanthochromis_polyacanthus
ENSKMAG00000019507	casc3	81	50.087	ENSAMEG00000007764	CASC3	59	63.025	Ailuropoda_melanoleuca
ENSKMAG00000019507	casc3	66	92.086	ENSACIG00000000720	casc3	80	92.086	Amphilophus_citrinellus
ENSKMAG00000019507	casc3	99	71.946	ENSAOCG00000016676	casc3	92	73.705	Amphiprion_ocellaris
ENSKMAG00000019507	casc3	99	71.007	ENSAPEG00000006787	casc3	92	72.908	Amphiprion_percula
ENSKMAG00000019507	casc3	99	74.733	ENSATEG00000017196	casc3	93	74.967	Anabas_testudineus
ENSKMAG00000019507	casc3	60	71.818	ENSACAG00000002674	CASC3	56	79.787	Anolis_carolinensis
ENSKMAG00000019507	casc3	98	43.421	ENSANAG00000034820	-	66	62.447	Aotus_nancymaae
ENSKMAG00000019507	casc3	52	63.462	ENSANAG00000031954	-	71	77.500	Aotus_nancymaae
ENSKMAG00000019507	casc3	99	75.000	ENSACLG00000016198	casc3	93	75.770	Astatotilapia_calliptera
ENSKMAG00000019507	casc3	98	56.430	ENSAMXG00000032452	casc3	91	55.249	Astyanax_mexicanus
ENSKMAG00000019507	casc3	81	49.303	ENSBTAG00000006250	CASC3	64	63.025	Bos_taurus
ENSKMAG00000019507	casc3	60	71.930	ENSCAFG00020018882	CASC3	62	79.787	Canis_lupus_dingo
ENSKMAG00000019507	casc3	81	49.129	ENSCHIG00000006338	CASC3	57	63.415	Capra_hircus
ENSKMAG00000019507	casc3	81	49.650	ENSTSYG00000002975	CASC3	56	65.244	Carlito_syrichta
ENSKMAG00000019507	casc3	81	49.737	ENSCAPG00000010514	CASC3	64	64.780	Cavia_aperea
ENSKMAG00000019507	casc3	81	49.391	ENSCPOG00000015139	CASC3	64	63.025	Cavia_porcellus
ENSKMAG00000019507	casc3	81	49.209	ENSCCAG00000033620	CASC3	66	63.445	Cebus_capucinus
ENSKMAG00000019507	casc3	81	48.785	ENSCATG00000033593	CASC3	66	63.866	Cercocebus_atys
ENSKMAG00000019507	casc3	81	48.958	ENSCLAG00000013730	CASC3	64	62.185	Chinchilla_lanigera
ENSKMAG00000019507	casc3	81	48.785	ENSCSAG00000002777	CASC3	66	63.866	Chlorocebus_sabaeus
ENSKMAG00000019507	casc3	99	41.304	ENSCPBG00000004750	CASC3	61	65.190	Chrysemys_picta_bellii
ENSKMAG00000019507	casc3	81	48.958	ENSCANG00000008814	CASC3	66	63.445	Colobus_angolensis_palliatus
ENSKMAG00000019507	casc3	81	49.470	ENSCGRG00001014706	Casc3	66	63.445	Cricetulus_griseus_chok1gshd
ENSKMAG00000019507	casc3	99	44.733	ENSCGRG00000001952	Casc3	71	63.445	Cricetulus_griseus_crigri
ENSKMAG00000019507	casc3	83	93.750	ENSCSEG00000010047	casc3	65	93.750	Cynoglossus_semilaevis
ENSKMAG00000019507	casc3	99	73.984	ENSCVAG00000014935	casc3	92	75.102	Cyprinodon_variegatus
ENSKMAG00000019507	casc3	81	48.870	ENSDNOG00000017249	CASC3	61	62.605	Dasypus_novemcinctus
ENSKMAG00000019507	casc3	81	47.100	ENSETEG00000013720	CASC3	57	65.244	Echinops_telfairi
ENSKMAG00000019507	casc3	71	38.057	ENSEBUG00000010654	casc3	57	45.562	Eptatretus_burgeri
ENSKMAG00000019507	casc3	83	49.438	ENSEASG00005002909	CASC3	62	79.787	Equus_asinus_asinus
ENSKMAG00000019507	casc3	81	49.565	ENSECAG00000019947	CASC3	50	64.634	Equus_caballus
ENSKMAG00000019507	casc3	99	57.564	ENSELUG00000015093	casc3	78	60.260	Esox_lucius
ENSKMAG00000019507	casc3	76	52.874	ENSFALG00000000412	CASC3	62	65.772	Ficedula_albicollis
ENSKMAG00000019507	casc3	83	49.071	ENSFDAG00000020696	CASC3	61	64.634	Fukomys_damarensis
ENSKMAG00000019507	casc3	99	74.764	ENSFHEG00000015793	casc3	93	73.414	Fundulus_heteroclitus
ENSKMAG00000019507	casc3	99	50.000	ENSGALG00000031813	CASC3	69	58.750	Gallus_gallus
ENSKMAG00000019507	casc3	97	77.503	ENSGAFG00000017148	casc3	80	76.366	Gambusia_affinis
ENSKMAG00000019507	casc3	60	72.727	ENSGAGG00000008432	CASC3	66	65.190	Gopherus_agassizii
ENSKMAG00000019507	casc3	99	43.232	ENSGGOG00000005067	CASC3	66	63.025	Gorilla_gorilla
ENSKMAG00000019507	casc3	99	75.134	ENSHBUG00000013155	casc3	93	75.904	Haplochromis_burtoni
ENSKMAG00000019507	casc3	81	48.951	ENSHGLG00000012117	CASC3	58	61.765	Heterocephalus_glaber_female
ENSKMAG00000019507	casc3	81	48.951	ENSHGLG00100002268	CASC3	65	61.345	Heterocephalus_glaber_male
ENSKMAG00000019507	casc3	99	61.879	ENSHCOG00000002664	casc3	92	61.404	Hippocampus_comes
ENSKMAG00000019507	casc3	81	49.306	ENSSTOG00000006374	CASC3	66	63.445	Ictidomys_tridecemlineatus
ENSKMAG00000019507	casc3	60	69.925	ENSJJAG00000023525	Casc3	55	68.243	Jaculus_jaculus
ENSKMAG00000019507	casc3	99	69.470	ENSLBEG00000005435	casc3	93	69.560	Labrus_bergylta
ENSKMAG00000019507	casc3	77	46.628	ENSLACG00000013200	CASC3	63	58.750	Latimeria_chalumnae
ENSKMAG00000019507	casc3	61	67.411	ENSLOCG00000013518	casc3	63	67.411	Lepisosteus_oculatus
ENSKMAG00000019507	casc3	81	48.596	ENSLAFG00000000606	CASC3	56	64.024	Loxodonta_africana
ENSKMAG00000019507	casc3	59	71.818	ENSMFAG00000041496	CASC3	62	79.787	Macaca_fascicularis
ENSKMAG00000019507	casc3	81	48.785	ENSMMUG00000045187	CASC3	66	63.866	Macaca_mulatta
ENSKMAG00000019507	casc3	81	48.785	ENSMLEG00000029049	CASC3	74	63.866	Mandrillus_leucophaeus
ENSKMAG00000019507	casc3	99	72.326	ENSMAMG00000005235	casc3	93	72.423	Mastacembelus_armatus
ENSKMAG00000019507	casc3	99	75.000	ENSMZEG00005003815	casc3	93	75.770	Maylandia_zebra
ENSKMAG00000019507	casc3	76	50.775	ENSMGAG00000013247	CASC3	62	68.085	Meleagris_gallopavo
ENSKMAG00000019507	casc3	73	46.693	ENSMAUG00000006023	Casc3	54	63.445	Mesocricetus_auratus
ENSKMAG00000019507	casc3	63	59.890	ENSMICG00000003321	CASC3	66	61.765	Microcebus_murinus
ENSKMAG00000019507	casc3	81	49.823	ENSMOCG00000013644	Casc3	66	63.559	Microtus_ochrogaster
ENSKMAG00000019507	casc3	97	69.368	ENSMMOG00000014339	casc3	100	60.864	Mola_mola
ENSKMAG00000019507	casc3	56	78.947	ENSMODG00000013044	CASC3	53	79.787	Monodelphis_domestica
ENSKMAG00000019507	casc3	65	97.938	ENSMALG00000019771	casc3	84	85.385	Monopterus_albus
ENSKMAG00000019507	casc3	81	50.000	MGP_CAROLIEiJ_G0017099	Casc3	66	63.445	Mus_caroli
ENSKMAG00000019507	casc3	81	49.824	ENSMUSG00000078676	Casc3	66	64.286	Mus_musculus
ENSKMAG00000019507	casc3	81	49.648	MGP_SPRETEiJ_G0017943	Casc3	66	63.866	Mus_spretus
ENSKMAG00000019507	casc3	81	49.212	ENSMPUG00000014903	CASC3	59	62.447	Mustela_putorius_furo
ENSKMAG00000019507	casc3	81	48.866	ENSMLUG00000010520	CASC3	56	63.415	Myotis_lucifugus
ENSKMAG00000019507	casc3	81	48.522	ENSNGAG00000023121	Casc3	66	61.765	Nannospalax_galili
ENSKMAG00000019507	casc3	81	49.303	ENSNLEG00000001598	CASC3	66	64.557	Nomascus_leucogenys
ENSKMAG00000019507	casc3	74	39.511	ENSMEUG00000015662	CASC3	57	59.394	Notamacropus_eugenii
ENSKMAG00000019507	casc3	81	49.303	ENSODEG00000017858	CASC3	63	62.185	Octodon_degus
ENSKMAG00000019507	casc3	99	75.000	ENSONIG00000009337	casc3	93	74.301	Oreochromis_niloticus
ENSKMAG00000019507	casc3	81	48.785	ENSOCUG00000002954	CASC3	64	62.605	Oryctolagus_cuniculus
ENSKMAG00000019507	casc3	99	65.395	ENSORLG00000023125	casc3	92	65.531	Oryzias_latipes
ENSKMAG00000019507	casc3	81	48.354	ENSOGAG00000034486	CASC3	66	62.500	Otolemur_garnettii
ENSKMAG00000019507	casc3	81	49.303	ENSOARG00000013239	CASC3	64	63.025	Ovis_aries
ENSKMAG00000019507	casc3	81	48.511	ENSPPAG00000035069	CASC3	59	63.025	Pan_paniscus
ENSKMAG00000019507	casc3	81	48.611	ENSPANG00000021708	CASC3	66	63.866	Papio_anubis
ENSKMAG00000019507	casc3	99	52.217	ENSPKIG00000023186	casc3	77	61.337	Paramormyrops_kingsleyae
ENSKMAG00000019507	casc3	66	58.511	ENSPEMG00000009774	Casc3	66	63.866	Peromyscus_maniculatus_bairdii
ENSKMAG00000019507	casc3	63	60.989	ENSPCIG00000025678	CASC3	59	61.017	Phascolarctos_cinereus
ENSKMAG00000019507	casc3	98	72.653	ENSPFOG00000017632	casc3	96	77.739	Poecilia_formosa
ENSKMAG00000019507	casc3	99	76.923	ENSPLAG00000005268	casc3	93	78.108	Poecilia_latipinna
ENSKMAG00000019507	casc3	86	59.418	ENSPMEG00000010299	casc3	73	85.380	Poecilia_mexicana
ENSKMAG00000019507	casc3	84	79.200	ENSPREG00000011856	casc3	91	79.520	Poecilia_reticulata
ENSKMAG00000019507	casc3	74	50.932	ENSPPYG00000008467	CASC3	59	63.445	Pongo_abelii
ENSKMAG00000019507	casc3	63	59.890	ENSPCOG00000008183	CASC3	66	62.185	Propithecus_coquereli
ENSKMAG00000019507	casc3	81	48.947	ENSPVAG00000008556	CASC3	55	68.243	Pteropus_vampyrus
ENSKMAG00000019507	casc3	99	75.267	ENSPNYG00000011962	casc3	93	76.037	Pundamilia_nyererei
ENSKMAG00000019507	casc3	98	57.124	ENSPNAG00000015928	casc3	91	55.836	Pygocentrus_nattereri
ENSKMAG00000019507	casc3	60	71.818	ENSRNOG00000009716	Casc3	62	79.787	Rattus_norvegicus
ENSKMAG00000019507	casc3	91	44.870	ENSRBIG00000033289	CASC3	60	63.866	Rhinopithecus_bieti
ENSKMAG00000019507	casc3	91	44.870	ENSRROG00000022337	CASC3	66	63.866	Rhinopithecus_roxellana
ENSKMAG00000019507	casc3	81	49.033	ENSSBOG00000031406	CASC3	51	51.471	Saimiri_boliviensis_boliviensis
ENSKMAG00000019507	casc3	81	48.511	ENSSHAG00000013338	CASC3	66	60.833	Sarcophilus_harrisii
ENSKMAG00000019507	casc3	62	70.992	ENSSFOG00015002645	casc3	56	83.505	Scleropages_formosus
ENSKMAG00000019507	casc3	76	85.714	ENSSMAG00000016096	casc3	94	68.742	Scophthalmus_maximus
ENSKMAG00000019507	casc3	99	74.764	ENSSDUG00000016893	casc3	88	75.946	Seriola_dumerili
ENSKMAG00000019507	casc3	83	74.203	ENSSLDG00000020308	casc3	98	76.093	Seriola_lalandi_dorsalis
ENSKMAG00000019507	casc3	50	67.347	ENSSARG00000010378	CASC3	58	67.347	Sorex_araneus
ENSKMAG00000019507	casc3	99	74.403	ENSSPAG00000023008	casc3	93	73.838	Stegastes_partitus
ENSKMAG00000019507	casc3	75	51.852	ENSSSCG00000017477	CASC3	74	62.605	Sus_scrofa
ENSKMAG00000019507	casc3	77	45.572	ENSTGUG00000002300	CASC3	65	65.385	Taeniopygia_guttata
ENSKMAG00000019507	casc3	99	67.209	ENSTRUG00000000673	casc3	92	65.989	Takifugu_rubripes
ENSKMAG00000019507	casc3	100	61.932	ENSTNIG00000003208	casc3	100	59.744	Tetraodon_nigroviridis
ENSKMAG00000019507	casc3	50	71.429	ENSTTRG00000016896	CASC3	59	71.429	Tursiops_truncatus
ENSKMAG00000019507	casc3	81	49.825	ENSUAMG00000015116	CASC3	62	79.787	Ursus_americanus
ENSKMAG00000019507	casc3	81	49.474	ENSUMAG00000017697	CASC3	75	75.789	Ursus_maritimus
ENSKMAG00000019507	casc3	98	79.207	ENSXMAG00000013937	casc3	93	79.675	Xiphophorus_maculatus