EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000020134 (Gene tree)
Gene ID: 108242339
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 3695 bases
Position: chrLWHD01000004.1:5278159-5281853
Accession: 108242339
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000027148	SMN	PF06003.12	1.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000027489	-	1707	XM_017427133	ENSKMAP00000027148	238 (aa)	XP_017282622	UPI0007F8C221

Gene Model

Click here to download ENSKMAG00000020134's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000020134's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000020134	smndc1	100	75.210	ENSG00000119953	SMNDC1	100	75.210	Homo_sapiens
ENSKMAG00000020134	smndc1	100	90.336	ENSAPOG00000021772	smndc1	100	90.336	Acanthochromis_polyacanthus
ENSKMAG00000020134	smndc1	100	75.210	ENSAMEG00000005251	SMNDC1	100	75.210	Ailuropoda_melanoleuca
ENSKMAG00000020134	smndc1	100	88.655	ENSACIG00000004819	smndc1	100	88.655	Amphilophus_citrinellus
ENSKMAG00000020134	smndc1	100	89.076	ENSAOCG00000017869	smndc1	100	89.076	Amphiprion_ocellaris
ENSKMAG00000020134	smndc1	100	89.076	ENSAPEG00000007752	smndc1	100	89.076	Amphiprion_percula
ENSKMAG00000020134	smndc1	100	89.076	ENSATEG00000006830	smndc1	100	89.076	Anabas_testudineus
ENSKMAG00000020134	smndc1	83	75.253	ENSAPLG00000004322	SMNDC1	100	75.253	Anas_platyrhynchos
ENSKMAG00000020134	smndc1	100	76.471	ENSACAG00000005983	SMNDC1	100	76.471	Anolis_carolinensis
ENSKMAG00000020134	smndc1	100	75.210	ENSANAG00000032875	SMNDC1	100	75.210	Aotus_nancymaae
ENSKMAG00000020134	smndc1	100	88.655	ENSACLG00000016360	smndc1	100	88.655	Astatotilapia_calliptera
ENSKMAG00000020134	smndc1	100	80.672	ENSAMXG00000020310	smndc1	100	81.092	Astyanax_mexicanus
ENSKMAG00000020134	smndc1	100	74.790	ENSBTAG00000000551	SMNDC1	100	74.790	Bos_taurus
ENSKMAG00000020134	smndc1	100	75.210	ENSCJAG00000018624	SMNDC1	100	75.210	Callithrix_jacchus
ENSKMAG00000020134	smndc1	100	75.210	ENSCAFG00000010720	SMNDC1	100	75.210	Canis_familiaris
ENSKMAG00000020134	smndc1	100	75.210	ENSCAFG00020011913	SMNDC1	100	75.210	Canis_lupus_dingo
ENSKMAG00000020134	smndc1	100	74.790	ENSCHIG00000010604	SMNDC1	100	74.790	Capra_hircus
ENSKMAG00000020134	smndc1	100	75.210	ENSTSYG00000026454	SMNDC1	100	75.210	Carlito_syrichta
ENSKMAG00000020134	smndc1	100	61.667	ENSCAPG00000009132	SMNDC1	100	71.642	Cavia_aperea
ENSKMAG00000020134	smndc1	100	75.210	ENSCPOG00000031666	SMNDC1	100	75.210	Cavia_porcellus
ENSKMAG00000020134	smndc1	100	75.210	ENSCCAG00000021793	SMNDC1	100	75.210	Cebus_capucinus
ENSKMAG00000020134	smndc1	100	74.790	ENSCATG00000035910	SMNDC1	100	74.790	Cercocebus_atys
ENSKMAG00000020134	smndc1	100	75.210	ENSCLAG00000002838	SMNDC1	100	75.210	Chinchilla_lanigera
ENSKMAG00000020134	smndc1	100	75.210	ENSCSAG00000005169	SMNDC1	100	75.210	Chlorocebus_sabaeus
ENSKMAG00000020134	smndc1	81	70.466	ENSCHOG00000002936	SMNDC1	100	70.466	Choloepus_hoffmanni
ENSKMAG00000020134	smndc1	100	75.630	ENSCPBG00000012837	SMNDC1	100	75.630	Chrysemys_picta_bellii
ENSKMAG00000020134	smndc1	100	69.748	ENSCANG00000034620	-	100	69.748	Colobus_angolensis_palliatus
ENSKMAG00000020134	smndc1	100	75.210	ENSCANG00000031720	-	100	75.210	Colobus_angolensis_palliatus
ENSKMAG00000020134	smndc1	100	58.403	ENSCANG00000036994	-	100	58.403	Colobus_angolensis_palliatus
ENSKMAG00000020134	smndc1	100	74.790	ENSCGRG00001012973	Smndc1	100	74.790	Cricetulus_griseus_chok1gshd
ENSKMAG00000020134	smndc1	100	74.790	ENSCGRG00000012396	Smndc1	100	74.790	Cricetulus_griseus_crigri
ENSKMAG00000020134	smndc1	100	84.454	ENSCSEG00000015621	smndc1	100	84.454	Cynoglossus_semilaevis
ENSKMAG00000020134	smndc1	100	89.916	ENSCVAG00000020432	smndc1	100	89.916	Cyprinodon_variegatus
ENSKMAG00000020134	smndc1	100	81.590	ENSDARG00000056235	smndc1	100	81.590	Danio_rerio
ENSKMAG00000020134	smndc1	100	75.210	ENSDNOG00000016387	SMNDC1	83	75.210	Dasypus_novemcinctus
ENSKMAG00000020134	smndc1	100	75.210	ENSDORG00000023715	Smndc1	100	75.210	Dipodomys_ordii
ENSKMAG00000020134	smndc1	95	42.169	FBgn0039977	CG17454	98	43.373	Drosophila_melanogaster
ENSKMAG00000020134	smndc1	100	67.220	ENSEBUG00000010929	smndc1	100	67.220	Eptatretus_burgeri
ENSKMAG00000020134	smndc1	100	75.210	ENSEASG00005014930	SMNDC1	100	75.210	Equus_asinus_asinus
ENSKMAG00000020134	smndc1	100	75.210	ENSECAG00000029973	SMNDC1	100	75.210	Equus_caballus
ENSKMAG00000020134	smndc1	83	54.040	ENSEEUG00000013407	-	100	54.040	Erinaceus_europaeus
ENSKMAG00000020134	smndc1	100	83.613	ENSELUG00000000227	smndc1	100	83.613	Esox_lucius
ENSKMAG00000020134	smndc1	100	75.210	ENSFCAG00000027353	SMNDC1	100	75.210	Felis_catus
ENSKMAG00000020134	smndc1	100	76.050	ENSFALG00000002306	SMNDC1	100	76.050	Ficedula_albicollis
ENSKMAG00000020134	smndc1	100	75.210	ENSFDAG00000006468	SMNDC1	100	75.210	Fukomys_damarensis
ENSKMAG00000020134	smndc1	100	89.916	ENSFHEG00000020150	smndc1	100	89.916	Fundulus_heteroclitus
ENSKMAG00000020134	smndc1	100	82.353	ENSGMOG00000016585	smndc1	100	82.353	Gadus_morhua
ENSKMAG00000020134	smndc1	100	76.050	ENSGALG00000008561	SMNDC1	100	76.050	Gallus_gallus
ENSKMAG00000020134	smndc1	100	89.496	ENSGAFG00000011582	smndc1	100	89.496	Gambusia_affinis
ENSKMAG00000020134	smndc1	100	86.134	ENSGACG00000009468	smndc1	100	86.134	Gasterosteus_aculeatus
ENSKMAG00000020134	smndc1	100	75.630	ENSGAGG00000024547	SMNDC1	100	75.630	Gopherus_agassizii
ENSKMAG00000020134	smndc1	100	75.210	ENSGGOG00000010071	SMNDC1	100	75.210	Gorilla_gorilla
ENSKMAG00000020134	smndc1	100	88.655	ENSHBUG00000017596	smndc1	100	88.655	Haplochromis_burtoni
ENSKMAG00000020134	smndc1	100	75.210	ENSHGLG00000013390	-	100	75.210	Heterocephalus_glaber_female
ENSKMAG00000020134	smndc1	100	54.508	ENSHGLG00000001157	-	100	53.689	Heterocephalus_glaber_female
ENSKMAG00000020134	smndc1	100	75.210	ENSHGLG00100004814	-	100	75.210	Heterocephalus_glaber_male
ENSKMAG00000020134	smndc1	100	60.656	ENSHGLG00100004278	-	100	58.871	Heterocephalus_glaber_male
ENSKMAG00000020134	smndc1	100	84.100	ENSHCOG00000000783	smndc1	100	84.100	Hippocampus_comes
ENSKMAG00000020134	smndc1	100	81.092	ENSIPUG00000004217	smndc1	100	81.092	Ictalurus_punctatus
ENSKMAG00000020134	smndc1	100	75.210	ENSSTOG00000006088	SMNDC1	100	75.210	Ictidomys_tridecemlineatus
ENSKMAG00000020134	smndc1	100	75.210	ENSJJAG00000019974	Smndc1	100	75.210	Jaculus_jaculus
ENSKMAG00000020134	smndc1	100	87.815	ENSLBEG00000004598	smndc1	100	87.815	Labrus_bergylta
ENSKMAG00000020134	smndc1	100	73.109	ENSLACG00000007784	SMNDC1	100	73.109	Latimeria_chalumnae
ENSKMAG00000020134	smndc1	100	82.353	ENSLOCG00000012355	smndc1	100	82.353	Lepisosteus_oculatus
ENSKMAG00000020134	smndc1	100	74.790	ENSLAFG00000014353	SMNDC1	100	74.790	Loxodonta_africana
ENSKMAG00000020134	smndc1	100	63.445	ENSMFAG00000038381	-	100	63.445	Macaca_fascicularis
ENSKMAG00000020134	smndc1	100	75.210	ENSMFAG00000002433	-	100	75.210	Macaca_fascicularis
ENSKMAG00000020134	smndc1	100	63.445	ENSMMUG00000045875	-	100	63.445	Macaca_mulatta
ENSKMAG00000020134	smndc1	100	75.210	ENSMMUG00000007775	SMNDC1	100	75.210	Macaca_mulatta
ENSKMAG00000020134	smndc1	100	65.966	ENSMNEG00000033853	-	100	65.966	Macaca_nemestrina
ENSKMAG00000020134	smndc1	100	75.210	ENSMNEG00000042963	-	100	75.210	Macaca_nemestrina
ENSKMAG00000020134	smndc1	100	70.711	ENSMLEG00000040236	SMNDC1	100	70.293	Mandrillus_leucophaeus
ENSKMAG00000020134	smndc1	89	85.915	ENSMAMG00000018233	smndc1	87	85.915	Mastacembelus_armatus
ENSKMAG00000020134	smndc1	100	88.655	ENSMZEG00005027510	smndc1	100	88.655	Maylandia_zebra
ENSKMAG00000020134	smndc1	84	75.500	ENSMGAG00000010777	SMNDC1	84	75.500	Meleagris_gallopavo
ENSKMAG00000020134	smndc1	99	62.447	ENSMAUG00000005459	-	93	62.447	Mesocricetus_auratus
ENSKMAG00000020134	smndc1	100	75.210	ENSMAUG00000012243	-	100	75.210	Mesocricetus_auratus
ENSKMAG00000020134	smndc1	100	65.126	ENSMICG00000031640	-	100	65.126	Microcebus_murinus
ENSKMAG00000020134	smndc1	100	74.790	ENSMICG00000027336	-	100	74.790	Microcebus_murinus
ENSKMAG00000020134	smndc1	100	74.790	ENSMOCG00000002458	Smndc1	100	74.790	Microtus_ochrogaster
ENSKMAG00000020134	smndc1	100	86.555	ENSMMOG00000008856	smndc1	100	86.555	Mola_mola
ENSKMAG00000020134	smndc1	100	75.210	ENSMODG00000010542	SMNDC1	100	75.210	Monodelphis_domestica
ENSKMAG00000020134	smndc1	100	87.395	ENSMALG00000017598	smndc1	100	87.395	Monopterus_albus
ENSKMAG00000020134	smndc1	100	75.210	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.210	Mus_caroli
ENSKMAG00000020134	smndc1	100	75.210	ENSMUSG00000025024	Smndc1	100	75.210	Mus_musculus
ENSKMAG00000020134	smndc1	100	75.210	MGP_PahariEiJ_G0014560	Smndc1	100	75.210	Mus_pahari
ENSKMAG00000020134	smndc1	100	75.210	MGP_SPRETEiJ_G0023993	Smndc1	100	75.210	Mus_spretus
ENSKMAG00000020134	smndc1	100	75.210	ENSMPUG00000002089	SMNDC1	100	75.210	Mustela_putorius_furo
ENSKMAG00000020134	smndc1	100	74.790	ENSMLUG00000016007	SMNDC1	100	74.790	Myotis_lucifugus
ENSKMAG00000020134	smndc1	100	75.630	ENSNGAG00000006833	Smndc1	100	75.630	Nannospalax_galili
ENSKMAG00000020134	smndc1	100	87.815	ENSNBRG00000017089	smndc1	100	87.815	Neolamprologus_brichardi
ENSKMAG00000020134	smndc1	100	75.210	ENSNLEG00000015471	SMNDC1	100	75.210	Nomascus_leucogenys
ENSKMAG00000020134	smndc1	70	57.229	ENSMEUG00000010120	-	82	57.229	Notamacropus_eugenii
ENSKMAG00000020134	smndc1	100	75.210	ENSOPRG00000015348	SMNDC1	100	75.210	Ochotona_princeps
ENSKMAG00000020134	smndc1	100	52.941	ENSODEG00000007594	-	100	50.840	Octodon_degus
ENSKMAG00000020134	smndc1	100	87.815	ENSONIG00000000434	smndc1	100	87.815	Oreochromis_niloticus
ENSKMAG00000020134	smndc1	100	75.630	ENSOANG00000001598	SMNDC1	100	75.630	Ornithorhynchus_anatinus
ENSKMAG00000020134	smndc1	100	75.210	ENSOCUG00000008145	-	100	75.210	Oryctolagus_cuniculus
ENSKMAG00000020134	smndc1	100	54.202	ENSOCUG00000012274	-	100	56.723	Oryctolagus_cuniculus
ENSKMAG00000020134	smndc1	100	81.933	ENSORLG00000005934	smndc1	95	81.933	Oryzias_latipes
ENSKMAG00000020134	smndc1	100	81.933	ENSORLG00020008796	smndc1	95	81.933	Oryzias_latipes_hni
ENSKMAG00000020134	smndc1	100	81.513	ENSORLG00015013666	smndc1	100	81.513	Oryzias_latipes_hsok
ENSKMAG00000020134	smndc1	100	80.252	ENSOMEG00000007590	smndc1	100	80.252	Oryzias_melastigma
ENSKMAG00000020134	smndc1	100	74.790	ENSOGAG00000000571	SMNDC1	100	74.790	Otolemur_garnettii
ENSKMAG00000020134	smndc1	100	74.790	ENSOARG00000009500	SMNDC1	100	74.790	Ovis_aries
ENSKMAG00000020134	smndc1	100	75.210	ENSPPAG00000027815	SMNDC1	100	75.210	Pan_paniscus
ENSKMAG00000020134	smndc1	100	75.210	ENSPPRG00000013749	SMNDC1	100	75.210	Panthera_pardus
ENSKMAG00000020134	smndc1	100	75.210	ENSPTIG00000011451	SMNDC1	100	75.210	Panthera_tigris_altaica
ENSKMAG00000020134	smndc1	100	75.210	ENSPTRG00000002937	SMNDC1	100	75.210	Pan_troglodytes
ENSKMAG00000020134	smndc1	100	75.210	ENSPANG00000020805	-	100	75.210	Papio_anubis
ENSKMAG00000020134	smndc1	100	70.588	ENSPANG00000031346	-	100	70.588	Papio_anubis
ENSKMAG00000020134	smndc1	100	79.832	ENSPKIG00000017164	smndc1	100	79.832	Paramormyrops_kingsleyae
ENSKMAG00000020134	smndc1	100	75.630	ENSPSIG00000012257	SMNDC1	100	75.630	Pelodiscus_sinensis
ENSKMAG00000020134	smndc1	100	81.092	ENSPMGG00000015651	smndc1	100	80.672	Periophthalmus_magnuspinnatus
ENSKMAG00000020134	smndc1	100	75.210	ENSPEMG00000022058	Smndc1	100	75.210	Peromyscus_maniculatus_bairdii
ENSKMAG00000020134	smndc1	100	64.490	ENSPMAG00000007705	smndc1	100	64.198	Petromyzon_marinus
ENSKMAG00000020134	smndc1	95	56.637	ENSPCIG00000009693	-	98	56.637	Phascolarctos_cinereus
ENSKMAG00000020134	smndc1	100	75.210	ENSPCIG00000018419	SMNDC1	100	75.210	Phascolarctos_cinereus
ENSKMAG00000020134	smndc1	100	90.336	ENSPFOG00000017113	smndc1	100	90.336	Poecilia_formosa
ENSKMAG00000020134	smndc1	100	89.916	ENSPLAG00000010372	smndc1	100	89.916	Poecilia_latipinna
ENSKMAG00000020134	smndc1	100	90.756	ENSPMEG00000012288	smndc1	100	90.756	Poecilia_mexicana
ENSKMAG00000020134	smndc1	100	89.076	ENSPREG00000012279	smndc1	100	89.076	Poecilia_reticulata
ENSKMAG00000020134	smndc1	100	75.210	ENSPPYG00000002643	SMNDC1	100	75.210	Pongo_abelii
ENSKMAG00000020134	smndc1	81	70.466	ENSPCAG00000016183	SMNDC1	100	70.466	Procavia_capensis
ENSKMAG00000020134	smndc1	100	74.790	ENSPCOG00000024343	SMNDC1	100	74.790	Propithecus_coquereli
ENSKMAG00000020134	smndc1	100	59.244	ENSPVAG00000004368	SMNDC1	100	59.244	Pteropus_vampyrus
ENSKMAG00000020134	smndc1	88	84.286	ENSPNYG00000024093	smndc1	92	83.886	Pundamilia_nyererei
ENSKMAG00000020134	smndc1	100	80.252	ENSPNAG00000025285	smndc1	100	80.252	Pygocentrus_nattereri
ENSKMAG00000020134	smndc1	100	75.210	ENSRNOG00000014833	Smndc1	100	75.210	Rattus_norvegicus
ENSKMAG00000020134	smndc1	100	74.790	ENSRBIG00000000224	-	100	74.790	Rhinopithecus_bieti
ENSKMAG00000020134	smndc1	100	60.504	ENSRBIG00000032452	-	100	60.504	Rhinopithecus_bieti
ENSKMAG00000020134	smndc1	100	75.210	ENSRROG00000044992	-	100	75.210	Rhinopithecus_roxellana
ENSKMAG00000020134	smndc1	100	60.504	ENSRROG00000039125	-	100	60.504	Rhinopithecus_roxellana
ENSKMAG00000020134	smndc1	100	75.210	ENSSBOG00000026789	SMNDC1	100	75.210	Saimiri_boliviensis_boliviensis
ENSKMAG00000020134	smndc1	100	75.210	ENSSHAG00000015189	SMNDC1	100	75.210	Sarcophilus_harrisii
ENSKMAG00000020134	smndc1	100	78.992	ENSSFOG00015008311	smndc1	100	78.992	Scleropages_formosus
ENSKMAG00000020134	smndc1	100	86.975	ENSSMAG00000020118	smndc1	100	86.975	Scophthalmus_maximus
ENSKMAG00000020134	smndc1	100	88.655	ENSSDUG00000015330	smndc1	100	88.655	Seriola_dumerili
ENSKMAG00000020134	smndc1	100	89.076	ENSSLDG00000017325	smndc1	100	89.076	Seriola_lalandi_dorsalis
ENSKMAG00000020134	smndc1	100	75.210	ENSSARG00000006063	SMNDC1	100	75.210	Sorex_araneus
ENSKMAG00000020134	smndc1	100	75.630	ENSSPUG00000004574	SMNDC1	100	75.630	Sphenodon_punctatus
ENSKMAG00000020134	smndc1	100	88.235	ENSSPAG00000000338	smndc1	100	88.235	Stegastes_partitus
ENSKMAG00000020134	smndc1	100	75.210	ENSSSCG00000030507	SMNDC1	100	75.210	Sus_scrofa
ENSKMAG00000020134	smndc1	100	76.050	ENSTGUG00000010599	SMNDC1	100	76.050	Taeniopygia_guttata
ENSKMAG00000020134	smndc1	100	84.034	ENSTRUG00000023281	smndc1	100	84.034	Takifugu_rubripes
ENSKMAG00000020134	smndc1	100	83.193	ENSTNIG00000013331	smndc1	100	83.193	Tetraodon_nigroviridis
ENSKMAG00000020134	smndc1	100	75.210	ENSTBEG00000014337	SMNDC1	100	75.210	Tupaia_belangeri
ENSKMAG00000020134	smndc1	100	75.210	ENSUAMG00000008142	SMNDC1	100	75.210	Ursus_americanus
ENSKMAG00000020134	smndc1	100	75.210	ENSUMAG00000023722	SMNDC1	100	75.210	Ursus_maritimus
ENSKMAG00000020134	smndc1	83	74.747	ENSVPAG00000003402	SMNDC1	100	74.747	Vicugna_pacos
ENSKMAG00000020134	smndc1	100	75.210	ENSVVUG00000007820	SMNDC1	100	75.210	Vulpes_vulpes
ENSKMAG00000020134	smndc1	60	61.268	ENSXETG00000015415	SMNDC1	100	61.268	Xenopus_tropicalis
ENSKMAG00000020134	smndc1	100	89.916	ENSXCOG00000009159	smndc1	100	89.916	Xiphophorus_couchianus
ENSKMAG00000020134	smndc1	100	90.756	ENSXMAG00000012755	smndc1	100	90.756	Xiphophorus_maculatus