EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000020300 (Gene tree)
Gene ID: 108231410
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 4417 bases
Position: chrLWHD01000011.1:2215724-2220140
Accession: 108231410
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000027374	Smg4_UPF3	PF03467.15	4.8e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000027717	-	2466	XM_017408465	ENSKMAP00000027374	456 (aa)	XP_017263954	UPI0007F92E07

Gene Model

Click here to download ENSKMAG00000020300's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03013	RNA transport	KEGG
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000020300's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000020300	upf3b	88	50.966	ENSG00000169062	UPF3A	50	62.264	Homo_sapiens
ENSKMAG00000020300	upf3b	64	64.821	ENSG00000125351	UPF3B	96	67.143	Homo_sapiens
ENSKMAG00000020300	upf3b	100	85.339	ENSAPOG00000012775	upf3b	100	85.339	Acanthochromis_polyacanthus
ENSKMAG00000020300	upf3b	96	57.359	ENSAMEG00000000163	UPF3B	96	56.018	Ailuropoda_melanoleuca
ENSKMAG00000020300	upf3b	100	77.322	ENSACIG00000013582	upf3b	100	78.186	Amphilophus_citrinellus
ENSKMAG00000020300	upf3b	100	84.026	ENSAOCG00000000706	upf3b	100	84.026	Amphiprion_ocellaris
ENSKMAG00000020300	upf3b	100	84.464	ENSAPEG00000005545	upf3b	100	84.464	Amphiprion_percula
ENSKMAG00000020300	upf3b	100	84.449	ENSATEG00000018742	upf3b	100	85.745	Anabas_testudineus
ENSKMAG00000020300	upf3b	89	49.517	ENSACAG00000001540	UPF3A	96	47.059	Anolis_carolinensis
ENSKMAG00000020300	upf3b	98	58.836	ENSACAG00000003625	UPF3B	98	55.508	Anolis_carolinensis
ENSKMAG00000020300	upf3b	96	54.095	ENSANAG00000025598	-	96	48.796	Aotus_nancymaae
ENSKMAG00000020300	upf3b	96	56.957	ENSANAG00000021894	-	97	66.986	Aotus_nancymaae
ENSKMAG00000020300	upf3b	100	83.660	ENSACLG00000001649	upf3b	100	83.224	Astatotilapia_calliptera
ENSKMAG00000020300	upf3b	96	47.124	ENSAMXG00000002608	upf3a	56	62.547	Astyanax_mexicanus
ENSKMAG00000020300	upf3b	68	81.467	ENSAMXG00000000199	upf3b	100	81.467	Astyanax_mexicanus
ENSKMAG00000020300	upf3b	56	66.788	ENSBTAG00000035615	UPF3B	68	66.825	Bos_taurus
ENSKMAG00000020300	upf3b	96	57.143	ENSCJAG00000004975	UPF3B	97	66.507	Callithrix_jacchus
ENSKMAG00000020300	upf3b	99	54.158	ENSCAFG00000018426	UPF3B	100	55.342	Canis_familiaris
ENSKMAG00000020300	upf3b	96	52.620	ENSCAFG00020004074	UPF3B	96	53.829	Canis_lupus_dingo
ENSKMAG00000020300	upf3b	96	52.092	ENSCHIG00000000247	-	96	54.043	Capra_hircus
ENSKMAG00000020300	upf3b	99	53.593	ENSCHIG00000018011	-	100	54.227	Capra_hircus
ENSKMAG00000020300	upf3b	96	54.130	ENSTSYG00000014690	UPF3B	96	61.860	Carlito_syrichta
ENSKMAG00000020300	upf3b	93	39.909	ENSCCAG00000029813	-	69	54.187	Cebus_capucinus
ENSKMAG00000020300	upf3b	64	64.821	ENSCATG00000017506	UPF3B	97	66.986	Cercocebus_atys
ENSKMAG00000020300	upf3b	64	65.798	ENSCLAG00000003260	UPF3B	96	55.459	Chinchilla_lanigera
ENSKMAG00000020300	upf3b	64	62.187	ENSCSAG00000018348	UPF3B	96	54.430	Chlorocebus_sabaeus
ENSKMAG00000020300	upf3b	94	57.466	ENSCPBG00000020685	UPF3B	94	55.882	Chrysemys_picta_bellii
ENSKMAG00000020300	upf3b	56	66.544	ENSCANG00000029220	UPF3B	66	66.825	Colobus_angolensis_palliatus
ENSKMAG00000020300	upf3b	94	51.828	ENSCGRG00001006858	-	94	53.215	Cricetulus_griseus_chok1gshd
ENSKMAG00000020300	upf3b	68	56.364	ENSCGRG00001013643	-	91	55.457	Cricetulus_griseus_chok1gshd
ENSKMAG00000020300	upf3b	86	54.369	ENSCGRG00000007627	Upf3b	93	56.030	Cricetulus_griseus_crigri
ENSKMAG00000020300	upf3b	99	74.322	ENSCSEG00000002046	upf3b	99	73.486	Cynoglossus_semilaevis
ENSKMAG00000020300	upf3b	100	82.751	ENSCVAG00000005030	upf3b	100	82.751	Cyprinodon_variegatus
ENSKMAG00000020300	upf3b	94	70.642	ENSDARG00000000489	upf3b	99	66.524	Danio_rerio
ENSKMAG00000020300	upf3b	92	48.611	ENSDARG00000069297	upf3a	89	49.312	Danio_rerio
ENSKMAG00000020300	upf3b	96	55.158	ENSDNOG00000008665	UPF3B	98	54.227	Dasypus_novemcinctus
ENSKMAG00000020300	upf3b	99	54.681	ENSDORG00000006077	Upf3b	98	54.060	Dipodomys_ordii
ENSKMAG00000020300	upf3b	96	54.762	ENSEASG00005012919	UPF3B	96	54.705	Equus_asinus_asinus
ENSKMAG00000020300	upf3b	96	54.762	ENSECAG00000016947	UPF3B	96	54.705	Equus_caballus
ENSKMAG00000020300	upf3b	99	66.460	ENSELUG00000020389	upf3b	100	66.529	Esox_lucius
ENSKMAG00000020300	upf3b	88	51.090	ENSELUG00000011050	upf3a	84	50.353	Esox_lucius
ENSKMAG00000020300	upf3b	96	53.879	ENSFCAG00000004388	UPF3B	96	55.748	Felis_catus
ENSKMAG00000020300	upf3b	96	49.664	ENSFCAG00000014602	UPF3A	89	45.033	Felis_catus
ENSKMAG00000020300	upf3b	97	56.008	ENSFALG00000001569	UPF3B	96	54.268	Ficedula_albicollis
ENSKMAG00000020300	upf3b	96	57.734	ENSFDAG00000018869	UPF3B	96	57.424	Fukomys_damarensis
ENSKMAG00000020300	upf3b	100	83.007	ENSFHEG00000017895	upf3b	100	83.007	Fundulus_heteroclitus
ENSKMAG00000020300	upf3b	100	66.383	ENSGMOG00000001621	upf3b	100	66.809	Gadus_morhua
ENSKMAG00000020300	upf3b	99	57.233	ENSGALG00000008618	UPF3B	98	56.513	Gallus_gallus
ENSKMAG00000020300	upf3b	100	83.151	ENSGAFG00000000829	upf3b	100	84.464	Gambusia_affinis
ENSKMAG00000020300	upf3b	100	75.914	ENSGACG00000017435	upf3b	94	85.938	Gasterosteus_aculeatus
ENSKMAG00000020300	upf3b	94	61.400	ENSGAGG00000001219	UPF3B	100	58.085	Gopherus_agassizii
ENSKMAG00000020300	upf3b	64	64.821	ENSGGOG00000023995	UPF3B	96	54.430	Gorilla_gorilla
ENSKMAG00000020300	upf3b	93	39.675	ENSGGOG00000041219	-	86	42.118	Gorilla_gorilla
ENSKMAG00000020300	upf3b	100	83.442	ENSHBUG00000017393	upf3b	100	83.007	Haplochromis_burtoni
ENSKMAG00000020300	upf3b	96	57.081	ENSHGLG00000019582	-	96	56.769	Heterocephalus_glaber_female
ENSKMAG00000020300	upf3b	67	57.716	ENSHGLG00000011189	-	80	53.982	Heterocephalus_glaber_female
ENSKMAG00000020300	upf3b	67	57.716	ENSHGLG00100001889	-	81	53.982	Heterocephalus_glaber_male
ENSKMAG00000020300	upf3b	96	54.803	ENSHGLG00100002042	-	96	54.585	Heterocephalus_glaber_male
ENSKMAG00000020300	upf3b	100	72.747	ENSHCOG00000017004	upf3b	100	73.176	Hippocampus_comes
ENSKMAG00000020300	upf3b	92	49.650	ENSHCOG00000013985	upf3a	69	69.697	Hippocampus_comes
ENSKMAG00000020300	upf3b	100	71.183	ENSIPUG00000019249	upf3b	100	71.183	Ictalurus_punctatus
ENSKMAG00000020300	upf3b	95	46.723	ENSIPUG00000023450	upf3a	93	49.889	Ictalurus_punctatus
ENSKMAG00000020300	upf3b	96	57.391	ENSSTOG00000001101	UPF3B	96	54.334	Ictidomys_tridecemlineatus
ENSKMAG00000020300	upf3b	97	51.620	ENSJJAG00000000053	Upf3b	96	53.579	Jaculus_jaculus
ENSKMAG00000020300	upf3b	61	87.365	ENSLBEG00000028689	upf3b	59	87.732	Labrus_bergylta
ENSKMAG00000020300	upf3b	100	60.752	ENSLACG00000008691	UPF3B	100	63.048	Latimeria_chalumnae
ENSKMAG00000020300	upf3b	99	60.480	ENSLOCG00000015238	upf3b	100	67.896	Lepisosteus_oculatus
ENSKMAG00000020300	upf3b	91	54.225	ENSLOCG00000002665	upf3a	87	51.643	Lepisosteus_oculatus
ENSKMAG00000020300	upf3b	96	56.427	ENSLAFG00000001267	UPF3B	96	57.516	Loxodonta_africana
ENSKMAG00000020300	upf3b	64	64.495	ENSMFAG00000045414	UPF3B	97	66.986	Macaca_fascicularis
ENSKMAG00000020300	upf3b	64	64.495	ENSMMUG00000020222	UPF3B	97	66.986	Macaca_mulatta
ENSKMAG00000020300	upf3b	64	64.495	ENSMNEG00000039794	UPF3B	97	66.986	Macaca_nemestrina
ENSKMAG00000020300	upf3b	64	64.821	ENSMLEG00000010999	UPF3B	97	66.986	Mandrillus_leucophaeus
ENSKMAG00000020300	upf3b	91	49.433	ENSMAMG00000018364	upf3a	86	47.285	Mastacembelus_armatus
ENSKMAG00000020300	upf3b	100	83.878	ENSMZEG00005007871	upf3b	100	83.442	Maylandia_zebra
ENSKMAG00000020300	upf3b	83	57.692	ENSMGAG00000007728	UPF3B	99	55.754	Meleagris_gallopavo
ENSKMAG00000020300	upf3b	86	49.389	ENSMGAG00000014837	UPF3A	97	44.819	Meleagris_gallopavo
ENSKMAG00000020300	upf3b	94	53.452	ENSMAUG00000008705	Upf3b	94	52.679	Mesocricetus_auratus
ENSKMAG00000020300	upf3b	56	66.788	ENSMICG00000001743	UPF3B	89	66.825	Microcebus_murinus
ENSKMAG00000020300	upf3b	97	53.571	ENSMOCG00000017893	Upf3b	98	50.936	Microtus_ochrogaster
ENSKMAG00000020300	upf3b	100	78.603	ENSMMOG00000004183	upf3b	100	79.039	Mola_mola
ENSKMAG00000020300	upf3b	92	50.467	ENSMODG00000003159	UPF3A	94	47.140	Monodelphis_domestica
ENSKMAG00000020300	upf3b	90	61.538	ENSMODG00000010232	UPF3B	97	60.964	Monodelphis_domestica
ENSKMAG00000020300	upf3b	100	82.581	ENSMALG00000008042	upf3b	100	83.011	Monopterus_albus
ENSKMAG00000020300	upf3b	97	51.357	MGP_CAROLIEiJ_G0032999	Upf3b	96	51.844	Mus_caroli
ENSKMAG00000020300	upf3b	97	51.288	ENSMUSG00000036572	Upf3b	96	52.495	Mus_musculus
ENSKMAG00000020300	upf3b	97	54.915	MGP_PahariEiJ_G0031543	Upf3b	96	52.928	Mus_pahari
ENSKMAG00000020300	upf3b	97	51.288	MGP_SPRETEiJ_G0034152	Upf3b	96	52.495	Mus_spretus
ENSKMAG00000020300	upf3b	99	54.565	ENSMPUG00000001531	UPF3B	100	56.144	Mustela_putorius_furo
ENSKMAG00000020300	upf3b	96	55.531	ENSMLUG00000010821	UPF3B	96	56.236	Myotis_lucifugus
ENSKMAG00000020300	upf3b	87	47.783	ENSMLUG00000015905	UPF3A	93	47.143	Myotis_lucifugus
ENSKMAG00000020300	upf3b	97	53.348	ENSNGAG00000008231	Upf3b	96	52.402	Nannospalax_galili
ENSKMAG00000020300	upf3b	59	69.517	ENSNLEG00000014897	UPF3B	88	58.294	Nomascus_leucogenys
ENSKMAG00000020300	upf3b	96	55.022	ENSODEG00000002186	-	96	52.079	Octodon_degus
ENSKMAG00000020300	upf3b	100	82.759	ENSONIG00000002536	upf3b	100	81.681	Oreochromis_niloticus
ENSKMAG00000020300	upf3b	89	57.518	ENSOANG00000002594	-	97	56.699	Ornithorhynchus_anatinus
ENSKMAG00000020300	upf3b	82	43.782	ENSOANG00000006985	-	55	53.390	Ornithorhynchus_anatinus
ENSKMAG00000020300	upf3b	97	55.042	ENSOCUG00000010213	UPF3B	96	52.954	Oryctolagus_cuniculus
ENSKMAG00000020300	upf3b	100	79.431	ENSORLG00000001026	upf3b	100	79.431	Oryzias_latipes
ENSKMAG00000020300	upf3b	97	50.000	ENSORLG00000010911	upf3a	93	47.548	Oryzias_latipes
ENSKMAG00000020300	upf3b	100	78.993	ENSORLG00020003758	upf3b	100	78.993	Oryzias_latipes_hni
ENSKMAG00000020300	upf3b	92	50.229	ENSORLG00020014317	upf3a	89	48.307	Oryzias_latipes_hni
ENSKMAG00000020300	upf3b	92	50.805	ENSORLG00015017339	upf3a	51	48.874	Oryzias_latipes_hsok
ENSKMAG00000020300	upf3b	100	78.993	ENSORLG00015012954	upf3b	100	78.993	Oryzias_latipes_hsok
ENSKMAG00000020300	upf3b	100	79.869	ENSOMEG00000014736	upf3b	100	79.869	Oryzias_melastigma
ENSKMAG00000020300	upf3b	92	49.203	ENSOMEG00000014425	upf3a	88	50.000	Oryzias_melastigma
ENSKMAG00000020300	upf3b	96	53.433	ENSOGAG00000004643	-	96	56.769	Otolemur_garnettii
ENSKMAG00000020300	upf3b	96	55.724	ENSOGAG00000033003	-	98	55.195	Otolemur_garnettii
ENSKMAG00000020300	upf3b	91	46.099	ENSOARG00000009004	UPF3A	51	60.630	Ovis_aries
ENSKMAG00000020300	upf3b	96	51.767	ENSOARG00000016051	-	96	53.700	Ovis_aries
ENSKMAG00000020300	upf3b	64	64.821	ENSPPAG00000040390	UPF3B	96	54.430	Pan_paniscus
ENSKMAG00000020300	upf3b	96	49.443	ENSPPRG00000025062	UPF3A	89	44.662	Panthera_pardus
ENSKMAG00000020300	upf3b	96	57.112	ENSPPRG00000023536	UPF3B	96	54.219	Panthera_pardus
ENSKMAG00000020300	upf3b	96	52.521	ENSPTIG00000015264	UPF3B	96	54.123	Panthera_tigris_altaica
ENSKMAG00000020300	upf3b	64	64.821	ENSPTRG00000022228	UPF3B	96	54.430	Pan_troglodytes
ENSKMAG00000020300	upf3b	64	64.821	ENSPANG00000000900	UPF3B	97	66.986	Papio_anubis
ENSKMAG00000020300	upf3b	99	67.100	ENSPKIG00000019226	upf3b	93	84.028	Paramormyrops_kingsleyae
ENSKMAG00000020300	upf3b	92	50.231	ENSPSIG00000007468	UPF3A	99	47.608	Pelodiscus_sinensis
ENSKMAG00000020300	upf3b	57	62.738	ENSPSIG00000005833	UPF3B	88	62.903	Pelodiscus_sinensis
ENSKMAG00000020300	upf3b	57	85.878	ENSPMGG00000016067	upf3b	95	85.878	Periophthalmus_magnuspinnatus
ENSKMAG00000020300	upf3b	97	54.357	ENSPEMG00000012352	Upf3b	96	53.680	Peromyscus_maniculatus_bairdii
ENSKMAG00000020300	upf3b	92	59.674	ENSPCIG00000028914	UPF3B	89	58.411	Phascolarctos_cinereus
ENSKMAG00000020300	upf3b	77	55.349	ENSPCIG00000019590	-	69	66.879	Phascolarctos_cinereus
ENSKMAG00000020300	upf3b	100	82.932	ENSPLAG00000005105	upf3b	100	84.245	Poecilia_latipinna
ENSKMAG00000020300	upf3b	100	82.932	ENSPLAG00000019922	upf3b	100	84.245	Poecilia_latipinna
ENSKMAG00000020300	upf3b	62	70.395	ENSPLAG00000011960	upf3a	89	48.387	Poecilia_latipinna
ENSKMAG00000020300	upf3b	100	82.713	ENSPMEG00000023532	upf3b	100	84.026	Poecilia_mexicana
ENSKMAG00000020300	upf3b	62	71.053	ENSPMEG00000000836	upf3a	88	47.380	Poecilia_mexicana
ENSKMAG00000020300	upf3b	65	58.567	ENSPPYG00000020675	-	82	66.300	Pongo_abelii
ENSKMAG00000020300	upf3b	99	52.479	ENSPCAG00000009464	UPF3B	98	53.734	Procavia_capensis
ENSKMAG00000020300	upf3b	96	54.881	ENSPCOG00000021960	UPF3B	89	66.825	Propithecus_coquereli
ENSKMAG00000020300	upf3b	96	46.300	ENSPVAG00000014075	UPF3B	96	43.404	Pteropus_vampyrus
ENSKMAG00000020300	upf3b	91	42.958	ENSPVAG00000005656	UPF3A	86	42.791	Pteropus_vampyrus
ENSKMAG00000020300	upf3b	100	84.245	ENSPNYG00000009846	upf3b	100	84.245	Pundamilia_nyererei
ENSKMAG00000020300	upf3b	99	70.386	ENSPNAG00000021528	upf3b	100	82.171	Pygocentrus_nattereri
ENSKMAG00000020300	upf3b	96	51.948	ENSRNOG00000039994	Upf3b	96	52.711	Rattus_norvegicus
ENSKMAG00000020300	upf3b	87	50.990	ENSRBIG00000034007	UPF3A	86	49.010	Rhinopithecus_bieti
ENSKMAG00000020300	upf3b	64	64.821	ENSRROG00000041031	UPF3B	97	66.986	Rhinopithecus_roxellana
ENSKMAG00000020300	upf3b	87	50.743	ENSRROG00000012212	UPF3A	81	48.762	Rhinopithecus_roxellana
ENSKMAG00000020300	upf3b	96	58.043	ENSSBOG00000019740	UPF3B	99	66.507	Saimiri_boliviensis_boliviensis
ENSKMAG00000020300	upf3b	98	56.757	ENSSHAG00000008634	UPF3B	100	56.315	Sarcophilus_harrisii
ENSKMAG00000020300	upf3b	92	49.883	ENSSHAG00000009895	UPF3A	96	47.260	Sarcophilus_harrisii
ENSKMAG00000020300	upf3b	99	67.904	ENSSFOG00015005614	upf3b	100	67.756	Scleropages_formosus
ENSKMAG00000020300	upf3b	100	77.468	ENSSMAG00000012913	upf3b	100	88.281	Scophthalmus_maximus
ENSKMAG00000020300	upf3b	100	81.996	ENSSDUG00000005682	upf3b	100	82.646	Seriola_dumerili
ENSKMAG00000020300	upf3b	91	43.365	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSKMAG00000020300	upf3b	100	83.514	ENSSLDG00000003130	upf3b	100	82.863	Seriola_lalandi_dorsalis
ENSKMAG00000020300	upf3b	89	53.810	ENSSARG00000004147	UPF3B	95	55.263	Sorex_araneus
ENSKMAG00000020300	upf3b	99	55.165	ENSSPUG00000013082	UPF3B	99	54.132	Sphenodon_punctatus
ENSKMAG00000020300	upf3b	99	86.564	ENSSPAG00000009989	upf3b	99	86.564	Stegastes_partitus
ENSKMAG00000020300	upf3b	97	56.624	ENSSSCG00000012617	UPF3B	96	55.580	Sus_scrofa
ENSKMAG00000020300	upf3b	90	61.205	ENSTGUG00000003413	UPF3B	96	58.894	Taeniopygia_guttata
ENSKMAG00000020300	upf3b	87	53.171	ENSTGUG00000009493	UPF3A	99	48.798	Taeniopygia_guttata
ENSKMAG00000020300	upf3b	100	77.948	ENSTRUG00000010645	upf3b	100	77.948	Takifugu_rubripes
ENSKMAG00000020300	upf3b	92	46.512	ENSTRUG00000012730	upf3a	85	48.926	Takifugu_rubripes
ENSKMAG00000020300	upf3b	89	43.341	ENSTNIG00000014973	upf3a	99	43.645	Tetraodon_nigroviridis
ENSKMAG00000020300	upf3b	99	69.348	ENSTNIG00000015763	upf3b	100	66.594	Tetraodon_nigroviridis
ENSKMAG00000020300	upf3b	99	46.488	ENSTBEG00000003229	UPF3B	75	56.410	Tupaia_belangeri
ENSKMAG00000020300	upf3b	96	53.930	ENSUAMG00000024565	UPF3B	96	53.392	Ursus_americanus
ENSKMAG00000020300	upf3b	89	53.641	ENSUMAG00000002150	UPF3B	87	52.451	Ursus_maritimus
ENSKMAG00000020300	upf3b	84	56.030	ENSVPAG00000009971	UPF3B	95	55.303	Vicugna_pacos
ENSKMAG00000020300	upf3b	96	52.620	ENSVVUG00000011594	UPF3B	97	66.986	Vulpes_vulpes
ENSKMAG00000020300	upf3b	95	54.054	ENSXETG00000007440	upf3b	85	77.551	Xenopus_tropicalis
ENSKMAG00000020300	upf3b	87	44.608	ENSXETG00000002572	upf3a	90	42.926	Xenopus_tropicalis
ENSKMAG00000020300	upf3b	100	74.728	ENSXCOG00000016586	upf3b	98	89.286	Xiphophorus_couchianus
ENSKMAG00000020300	upf3b	62	70.000	ENSXMAG00000013452	upf3a	88	48.519	Xiphophorus_maculatus
ENSKMAG00000020300	upf3b	100	81.838	ENSXMAG00000013680	upf3b	100	83.151	Xiphophorus_maculatus