EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000020848 (Gene tree)
Gene ID: 108251390
Gene Symbol: patl1
Alias: fa11d04|wu:fa11d04|zgc:158239
Full Name: protein PAT1 homolog 1-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 8511 bases
Position: chrLWHD01000859.1:36054-44564
Accession: 108251390
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000028101	PAT1	PF09770.9	1.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000028454	-	3010	XM_017441667	ENSKMAP00000028101	825 (aa)	XP_017297156	UPI0007F8B439

Gene Model

Click here to download ENSKMAG00000020848's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000020848's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000020848	patl1	82	55.556	ENSG00000166889	PATL1	62	60.000	Homo_sapiens
ENSKMAG00000020848	patl1	96	84.882	ENSAPOG00000021290	patl1	94	86.920	Acanthochromis_polyacanthus
ENSKMAG00000020848	patl1	82	55.556	ENSAMEG00000014215	PATL1	58	83.333	Ailuropoda_melanoleuca
ENSKMAG00000020848	patl1	99	78.129	ENSACIG00000005182	patl1	91	85.513	Amphilophus_citrinellus
ENSKMAG00000020848	patl1	94	82.248	ENSAOCG00000021993	patl1	95	81.050	Amphiprion_ocellaris
ENSKMAG00000020848	patl1	100	83.634	ENSAPEG00000021391	patl1	100	87.726	Amphiprion_percula
ENSKMAG00000020848	patl1	57	34.141	ENSAPEG00000011299	patl2	61	35.516	Amphiprion_percula
ENSKMAG00000020848	patl1	100	81.796	ENSATEG00000002230	patl1	100	81.014	Anabas_testudineus
ENSKMAG00000020848	patl1	53	38.126	ENSAPLG00000003980	PATL2	64	40.648	Anas_platyrhynchos
ENSKMAG00000020848	patl1	59	44.757	ENSAPLG00000013394	PATL1	64	54.747	Anas_platyrhynchos
ENSKMAG00000020848	patl1	79	51.807	ENSACAG00000006607	PATL1	59	80.000	Anolis_carolinensis
ENSKMAG00000020848	patl1	82	55.556	ENSANAG00000023078	PATL1	59	80.000	Aotus_nancymaae
ENSKMAG00000020848	patl1	100	88.327	ENSACLG00000005144	patl1	100	88.207	Astatotilapia_calliptera
ENSKMAG00000020848	patl1	51	37.444	ENSAMXG00000020293	patl2	57	38.500	Astyanax_mexicanus
ENSKMAG00000020848	patl1	62	86.216	ENSAMXG00000010731	patl1	99	89.286	Astyanax_mexicanus
ENSKMAG00000020848	patl1	79	65.385	ENSBTAG00000005913	PATL1	56	80.000	Bos_taurus
ENSKMAG00000020848	patl1	51	35.506	ENSCJAG00000002379	PATL2	72	37.164	Callithrix_jacchus
ENSKMAG00000020848	patl1	82	55.556	ENSCJAG00000016192	PATL1	62	60.000	Callithrix_jacchus
ENSKMAG00000020848	patl1	82	55.556	ENSCAFG00000007581	PATL1	62	60.000	Canis_familiaris
ENSKMAG00000020848	patl1	82	55.556	ENSCAFG00020001648	PATL1	92	60.000	Canis_lupus_dingo
ENSKMAG00000020848	patl1	80	63.333	ENSCHIG00000025913	PATL1	63	60.000	Capra_hircus
ENSKMAG00000020848	patl1	52	37.668	ENSCHIG00000026665	PATL2	74	38.861	Capra_hircus
ENSKMAG00000020848	patl1	51	36.054	ENSTSYG00000032456	PATL2	72	36.658	Carlito_syrichta
ENSKMAG00000020848	patl1	96	50.533	ENSTSYG00000012748	PATL1	88	61.667	Carlito_syrichta
ENSKMAG00000020848	patl1	97	49.247	ENSCAPG00000013668	PATL1	62	61.667	Cavia_aperea
ENSKMAG00000020848	patl1	97	47.801	ENSCPOG00000006827	PATL1	61	61.667	Cavia_porcellus
ENSKMAG00000020848	patl1	82	55.556	ENSCCAG00000023759	PATL1	62	60.000	Cebus_capucinus
ENSKMAG00000020848	patl1	82	55.556	ENSCATG00000009629	PATL1	62	60.000	Cercocebus_atys
ENSKMAG00000020848	patl1	81	60.938	ENSCLAG00000003427	PATL1	59	83.333	Chinchilla_lanigera
ENSKMAG00000020848	patl1	73	49.698	ENSCSAG00000006095	PATL1	61	53.791	Chlorocebus_sabaeus
ENSKMAG00000020848	patl1	61	58.000	ENSCHOG00000001611	PATL1	83	58.000	Choloepus_hoffmanni
ENSKMAG00000020848	patl1	51	36.508	ENSCANG00000013856	PATL2	72	37.871	Colobus_angolensis_palliatus
ENSKMAG00000020848	patl1	82	54.930	ENSCANG00000039197	PATL1	59	80.000	Colobus_angolensis_palliatus
ENSKMAG00000020848	patl1	80	63.333	ENSCGRG00001024927	Patl1	62	60.000	Cricetulus_griseus_chok1gshd
ENSKMAG00000020848	patl1	79	65.385	ENSCGRG00000000461	Patl1	59	80.000	Cricetulus_griseus_crigri
ENSKMAG00000020848	patl1	100	80.191	ENSCSEG00000008261	patl1	100	82.437	Cynoglossus_semilaevis
ENSKMAG00000020848	patl1	50	34.028	ENSCSEG00000009438	patl2	57	34.684	Cynoglossus_semilaevis
ENSKMAG00000020848	patl1	91	85.520	ENSCVAG00000006664	patl1	92	90.000	Cyprinodon_variegatus
ENSKMAG00000020848	patl1	100	71.981	ENSDARG00000017423	patl1	100	70.097	Danio_rerio
ENSKMAG00000020848	patl1	69	63.462	ENSDNOG00000038865	PATL1	76	53.207	Dasypus_novemcinctus
ENSKMAG00000020848	patl1	82	56.944	ENSDORG00000000237	Patl1	62	61.667	Dipodomys_ordii
ENSKMAG00000020848	patl1	79	65.385	ENSEASG00005007963	PATL1	87	80.000	Equus_asinus_asinus
ENSKMAG00000020848	patl1	51	35.388	ENSEASG00005017984	PATL2	71	35.821	Equus_asinus_asinus
ENSKMAG00000020848	patl1	79	65.385	ENSECAG00000011411	PATL1	87	80.000	Equus_caballus
ENSKMAG00000020848	patl1	51	36.219	ENSECAG00000013462	PATL2	72	36.973	Equus_caballus
ENSKMAG00000020848	patl1	100	73.357	ENSELUG00000024249	patl1	100	72.295	Esox_lucius
ENSKMAG00000020848	patl1	82	55.556	ENSFCAG00000015573	PATL1	93	60.000	Felis_catus
ENSKMAG00000020848	patl1	51	37.358	ENSFCAG00000027170	PATL2	73	38.213	Felis_catus
ENSKMAG00000020848	patl1	58	33.730	ENSFALG00000009768	PATL2	55	37.028	Ficedula_albicollis
ENSKMAG00000020848	patl1	74	50.075	ENSFALG00000012150	PATL1	90	80.000	Ficedula_albicollis
ENSKMAG00000020848	patl1	96	49.696	ENSFDAG00000016128	PATL1	89	83.333	Fukomys_damarensis
ENSKMAG00000020848	patl1	99	87.179	ENSFHEG00000017790	patl1	100	87.302	Fundulus_heteroclitus
ENSKMAG00000020848	patl1	73	49.698	ENSGALG00000042641	PATL1	84	47.440	Gallus_gallus
ENSKMAG00000020848	patl1	54	36.266	ENSGALG00000002167	PATL2	50	38.710	Gallus_gallus
ENSKMAG00000020848	patl1	57	35.174	ENSGAFG00000019344	patl2	56	37.000	Gambusia_affinis
ENSKMAG00000020848	patl1	100	84.970	ENSGAFG00000006508	patl1	100	84.458	Gambusia_affinis
ENSKMAG00000020848	patl1	99	69.249	ENSGACG00000016448	patl1	99	72.353	Gasterosteus_aculeatus
ENSKMAG00000020848	patl1	97	50.526	ENSGAGG00000004461	PATL1	92	61.667	Gopherus_agassizii
ENSKMAG00000020848	patl1	82	55.556	ENSGGOG00000004335	PATL1	92	60.000	Gorilla_gorilla
ENSKMAG00000020848	patl1	100	88.448	ENSHBUG00000005365	patl1	100	88.327	Haplochromis_burtoni
ENSKMAG00000020848	patl1	82	58.333	ENSHGLG00000018173	PATL1	93	61.667	Heterocephalus_glaber_female
ENSKMAG00000020848	patl1	80	54.839	ENSHGLG00100003453	PATL1	87	42.297	Heterocephalus_glaber_male
ENSKMAG00000020848	patl1	100	78.391	ENSHCOG00000001898	patl1	100	78.486	Hippocampus_comes
ENSKMAG00000020848	patl1	56	34.714	ENSIPUG00000020692	patl2	56	38.000	Ictalurus_punctatus
ENSKMAG00000020848	patl1	81	56.923	ENSSTOG00000013764	PATL1	59	80.000	Ictidomys_tridecemlineatus
ENSKMAG00000020848	patl1	51	36.343	ENSSTOG00000033848	PATL2	72	38.119	Ictidomys_tridecemlineatus
ENSKMAG00000020848	patl1	81	57.812	ENSJJAG00000010135	Patl1	59	83.333	Jaculus_jaculus
ENSKMAG00000020848	patl1	50	35.731	ENSLBEG00000022344	patl2	53	36.456	Labrus_bergylta
ENSKMAG00000020848	patl1	100	84.928	ENSLBEG00000023617	patl1	100	86.364	Labrus_bergylta
ENSKMAG00000020848	patl1	76	68.750	ENSLACG00000004640	PATL1	60	83.333	Latimeria_chalumnae
ENSKMAG00000020848	patl1	100	62.426	ENSLOCG00000000717	patl1	100	61.955	Lepisosteus_oculatus
ENSKMAG00000020848	patl1	81	55.556	ENSLAFG00000015161	PATL1	62	60.000	Loxodonta_africana
ENSKMAG00000020848	patl1	82	55.556	ENSMFAG00000040851	PATL1	57	80.000	Macaca_fascicularis
ENSKMAG00000020848	patl1	82	55.556	ENSMMUG00000017287	PATL1	62	60.000	Macaca_mulatta
ENSKMAG00000020848	patl1	82	55.556	ENSMNEG00000038692	PATL1	62	60.000	Macaca_nemestrina
ENSKMAG00000020848	patl1	82	55.556	ENSMLEG00000030044	PATL1	62	60.000	Mandrillus_leucophaeus
ENSKMAG00000020848	patl1	100	84.790	ENSMAMG00000003950	patl1	100	85.150	Mastacembelus_armatus
ENSKMAG00000020848	patl1	100	88.207	ENSMZEG00005013404	patl1	100	87.726	Maylandia_zebra
ENSKMAG00000020848	patl1	53	36.226	ENSMGAG00000001309	PATL2	64	39.152	Meleagris_gallopavo
ENSKMAG00000020848	patl1	73	65.385	ENSMGAG00000003406	PATL1	56	83.333	Meleagris_gallopavo
ENSKMAG00000020848	patl1	73	44.360	ENSMAUG00000012059	Patl1	74	53.459	Mesocricetus_auratus
ENSKMAG00000020848	patl1	55	34.409	ENSMAUG00000001008	Patl2	75	36.272	Mesocricetus_auratus
ENSKMAG00000020848	patl1	81	55.556	ENSMICG00000004172	PATL1	60	61.667	Microcebus_murinus
ENSKMAG00000020848	patl1	80	63.333	ENSMOCG00000010087	Patl1	62	60.000	Microtus_ochrogaster
ENSKMAG00000020848	patl1	80	82.087	ENSMMOG00000013711	patl1	92	94.828	Mola_mola
ENSKMAG00000020848	patl1	84	51.048	ENSMODG00000020201	PATL1	92	58.333	Monodelphis_domestica
ENSKMAG00000020848	patl1	53	36.900	ENSMODG00000017690	PATL2	71	38.072	Monodelphis_domestica
ENSKMAG00000020848	patl1	95	73.529	ENSMALG00000018706	patl1	100	67.519	Monopterus_albus
ENSKMAG00000020848	patl1	82	56.944	MGP_CAROLIEiJ_G0022739	Patl1	62	60.000	Mus_caroli
ENSKMAG00000020848	patl1	82	56.944	ENSMUSG00000046139	Patl1	62	60.000	Mus_musculus
ENSKMAG00000020848	patl1	82	56.944	MGP_PahariEiJ_G0014233	Patl1	62	60.000	Mus_pahari
ENSKMAG00000020848	patl1	82	56.944	MGP_SPRETEiJ_G0023652	Patl1	62	60.000	Mus_spretus
ENSKMAG00000020848	patl1	82	55.556	ENSMPUG00000014607	PATL1	62	60.000	Mustela_putorius_furo
ENSKMAG00000020848	patl1	80	63.333	ENSMLUG00000011169	PATL1	93	60.000	Myotis_lucifugus
ENSKMAG00000020848	patl1	82	55.556	ENSNGAG00000003682	Patl1	58	80.000	Nannospalax_galili
ENSKMAG00000020848	patl1	70	79.188	ENSNBRG00000015372	patl1	93	54.083	Neolamprologus_brichardi
ENSKMAG00000020848	patl1	81	55.556	ENSNLEG00000013081	PATL1	64	60.000	Nomascus_leucogenys
ENSKMAG00000020848	patl1	58	57.143	ENSMEUG00000009391	PATL1	74	57.143	Notamacropus_eugenii
ENSKMAG00000020848	patl1	61	54.780	ENSOPRG00000007963	PATL1	80	53.483	Ochotona_princeps
ENSKMAG00000020848	patl1	52	46.614	ENSODEG00000001792	PATL1	71	51.534	Octodon_degus
ENSKMAG00000020848	patl1	100	87.334	ENSONIG00000004170	patl1	100	88.434	Oreochromis_niloticus
ENSKMAG00000020848	patl1	82	55.556	ENSOCUG00000002156	PATL1	62	60.000	Oryctolagus_cuniculus
ENSKMAG00000020848	patl1	52	34.719	ENSOCUG00000006339	PATL2	75	36.520	Oryctolagus_cuniculus
ENSKMAG00000020848	patl1	82	55.556	ENSOGAG00000004351	PATL1	62	60.000	Otolemur_garnettii
ENSKMAG00000020848	patl1	82	52.113	ENSOARG00000012005	PATL1	56	80.000	Ovis_aries
ENSKMAG00000020848	patl1	50	35.845	ENSOARG00000003762	PATL2	72	36.842	Ovis_aries
ENSKMAG00000020848	patl1	82	55.556	ENSPPAG00000034275	PATL1	93	60.000	Pan_paniscus
ENSKMAG00000020848	patl1	81	56.250	ENSPPRG00000020639	PATL1	90	80.000	Panthera_pardus
ENSKMAG00000020848	patl1	51	36.674	ENSPPRG00000004279	PATL2	73	37.469	Panthera_pardus
ENSKMAG00000020848	patl1	82	55.556	ENSPTIG00000019298	PATL1	93	60.000	Panthera_tigris_altaica
ENSKMAG00000020848	patl1	51	36.674	ENSPTIG00000018964	PATL2	73	37.469	Panthera_tigris_altaica
ENSKMAG00000020848	patl1	81	55.556	ENSPTRG00000003697	PATL1	92	61.667	Pan_troglodytes
ENSKMAG00000020848	patl1	82	55.556	ENSPANG00000035620	PATL1	62	60.000	Papio_anubis
ENSKMAG00000020848	patl1	100	70.913	ENSPKIG00000016224	patl1	100	70.602	Paramormyrops_kingsleyae
ENSKMAG00000020848	patl1	83	51.824	ENSPSIG00000016206	PATL1	88	61.667	Pelodiscus_sinensis
ENSKMAG00000020848	patl1	100	79.444	ENSPMGG00000002644	patl1	100	78.623	Periophthalmus_magnuspinnatus
ENSKMAG00000020848	patl1	51	35.831	ENSPEMG00000016509	Patl2	71	37.831	Peromyscus_maniculatus_bairdii
ENSKMAG00000020848	patl1	79	66.667	ENSPEMG00000014215	Patl1	59	80.000	Peromyscus_maniculatus_bairdii
ENSKMAG00000020848	patl1	85	51.111	ENSPCIG00000010852	PATL1	94	58.333	Phascolarctos_cinereus
ENSKMAG00000020848	patl1	100	81.939	ENSPFOG00000007768	patl1	100	83.926	Poecilia_formosa
ENSKMAG00000020848	patl1	100	84.485	ENSPLAG00000018465	patl1	100	85.266	Poecilia_latipinna
ENSKMAG00000020848	patl1	100	85.455	ENSPMEG00000006555	patl1	100	84.783	Poecilia_mexicana
ENSKMAG00000020848	patl1	90	82.027	ENSPREG00000003874	patl1	95	81.941	Poecilia_reticulata
ENSKMAG00000020848	patl1	82	55.556	ENSPPYG00000003230	PATL1	62	60.000	Pongo_abelii
ENSKMAG00000020848	patl1	81	55.556	ENSPCOG00000020770	PATL1	92	60.000	Propithecus_coquereli
ENSKMAG00000020848	patl1	51	37.838	ENSPCOG00000000295	PATL2	99	39.891	Propithecus_coquereli
ENSKMAG00000020848	patl1	73	48.323	ENSPVAG00000015239	PATL1	63	50.725	Pteropus_vampyrus
ENSKMAG00000020848	patl1	86	93.808	ENSPNYG00000018936	patl1	96	93.538	Pundamilia_nyererei
ENSKMAG00000020848	patl1	53	36.268	ENSPNAG00000002315	patl2	57	38.693	Pygocentrus_nattereri
ENSKMAG00000020848	patl1	100	74.096	ENSPNAG00000017907	patl1	100	74.396	Pygocentrus_nattereri
ENSKMAG00000020848	patl1	82	56.944	ENSRNOG00000021052	Patl1	62	60.000	Rattus_norvegicus
ENSKMAG00000020848	patl1	82	55.556	ENSRBIG00000032263	PATL1	83	61.667	Rhinopithecus_bieti
ENSKMAG00000020848	patl1	82	55.556	ENSRROG00000032861	PATL1	62	60.000	Rhinopithecus_roxellana
ENSKMAG00000020848	patl1	82	55.556	ENSSBOG00000025195	PATL1	93	60.000	Saimiri_boliviensis_boliviensis
ENSKMAG00000020848	patl1	83	51.190	ENSSHAG00000004309	PATL1	62	58.333	Sarcophilus_harrisii
ENSKMAG00000020848	patl1	100	71.291	ENSSFOG00015009614	patl1	100	70.688	Scleropages_formosus
ENSKMAG00000020848	patl1	70	31.029	ENSSMAG00000017262	patl2	63	36.203	Scophthalmus_maximus
ENSKMAG00000020848	patl1	100	84.274	ENSSMAG00000009482	patl1	100	86.315	Scophthalmus_maximus
ENSKMAG00000020848	patl1	100	84.104	ENSSDUG00000005362	patl1	100	84.935	Seriola_dumerili
ENSKMAG00000020848	patl1	100	83.729	ENSSLDG00000019146	patl1	100	84.561	Seriola_lalandi_dorsalis
ENSKMAG00000020848	patl1	57	50.662	ENSSARG00000009600	PATL1	55	55.107	Sorex_araneus
ENSKMAG00000020848	patl1	80	54.444	ENSSPUG00000009453	PATL1	63	63.333	Sphenodon_punctatus
ENSKMAG00000020848	patl1	99	79.927	ENSSPAG00000003187	patl1	99	80.802	Stegastes_partitus
ENSKMAG00000020848	patl1	79	65.385	ENSSSCG00000013124	PATL1	94	48.976	Sus_scrofa
ENSKMAG00000020848	patl1	73	49.925	ENSTGUG00000006222	PATL1	90	80.000	Taeniopygia_guttata
ENSKMAG00000020848	patl1	53	33.626	ENSTRUG00000005647	patl2	56	34.606	Takifugu_rubripes
ENSKMAG00000020848	patl1	100	71.446	ENSTRUG00000000709	patl1	100	70.758	Takifugu_rubripes
ENSKMAG00000020848	patl1	71	59.615	ENSTBEG00000000796	PATL1	58	70.000	Tupaia_belangeri
ENSKMAG00000020848	patl1	65	54.780	ENSTTRG00000009389	PATL1	82	54.780	Tursiops_truncatus
ENSKMAG00000020848	patl1	79	64.583	ENSUMAG00000018634	PATL1	91	83.333	Ursus_maritimus
ENSKMAG00000020848	patl1	81	56.250	ENSVVUG00000016668	PATL1	89	80.000	Vulpes_vulpes
ENSKMAG00000020848	patl1	68	93.220	ENSXCOG00000010808	patl1	99	92.727	Xiphophorus_couchianus
ENSKMAG00000020848	patl1	100	84.364	ENSXMAG00000013834	patl1	100	84.439	Xiphophorus_maculatus