EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000020859 (Gene tree)
Gene ID: 108235276
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein A1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 6391 bases
Position: chrLWHD01000033.1:3075857-3082247
Accession: 108235276
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000028119	RRM_1	PF00076.22	5e-36	1	2
ENSKMAP00000028119	RRM_1	PF00076.22	5e-36	2	2
ENSKMAP00000028129	RRM_1	PF00076.22	5e-36	1	2
ENSKMAP00000028129	RRM_1	PF00076.22	5e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000028472	-	4121	XM_017415187	ENSKMAP00000028119	336 (aa)	XP_017270676	UPI0007F89A48
ENSKMAT00000028482	-	1476	XM_017415186	ENSKMAP00000028129	336 (aa)	XP_017270675	UPI0007F89A48

Gene Model

Click here to download ENSKMAG00000020859's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000020859's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000020859	-	56	82.540	ENSKMAG00000015973	hnrnpa3	56	82.979
ENSKMAG00000020859	-	60	40.415	ENSKMAG00000009494	msi2a	53	41.279
ENSKMAG00000020859	-	54	61.111	ENSKMAG00000010760	-	59	60.773
ENSKMAG00000020859	-	53	44.444	ENSKMAG00000011251	MSI1	52	40.761
ENSKMAG00000020859	-	54	40.437	ENSKMAG00000004310	hnrnpd	68	40.437
ENSKMAG00000020859	-	62	33.668	ENSKMAG00000005188	hnrnpaba	63	36.111
ENSKMAG00000020859	-	51	38.372	ENSKMAG00000005673	dazap1	50	33.816
ENSKMAG00000020859	-	52	40.789	ENSKMAG00000003831	-	64	40.260
ENSKMAG00000020859	-	55	41.714	ENSKMAG00000019877	-	55	42.105

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000020859	-	89	88.000	ENSAPOG00000019369	-	100	83.929	Acanthochromis_polyacanthus
ENSKMAG00000020859	-	53	55.367	ENSACIG00000021815	-	86	55.367	Amphilophus_citrinellus
ENSKMAG00000020859	-	89	91.667	ENSAOCG00000005289	-	100	89.583	Amphiprion_ocellaris
ENSKMAG00000020859	-	89	91.667	ENSAPEG00000004179	-	100	89.583	Amphiprion_percula
ENSKMAG00000020859	-	67	97.321	ENSATEG00000022918	hnrnpa1a	88	95.213	Anabas_testudineus
ENSKMAG00000020859	-	52	59.748	ENSATEG00000003423	-	75	59.748	Anabas_testudineus
ENSKMAG00000020859	-	67	95.595	ENSACLG00000006940	-	68	95.595	Astatotilapia_calliptera
ENSKMAG00000020859	-	54	62.712	ENSAMXG00000037730	-	53	62.011	Astyanax_mexicanus
ENSKMAG00000020859	-	55	84.239	ENSAMXG00000006296	hnrnpa1a	79	63.107	Astyanax_mexicanus
ENSKMAG00000020859	-	67	89.474	ENSCSEG00000007589	hnrnpa1a	99	80.857	Cynoglossus_semilaevis
ENSKMAG00000020859	-	54	54.749	ENSCSEG00000014051	-	74	53.846	Cynoglossus_semilaevis
ENSKMAG00000020859	-	67	96.444	ENSCVAG00000012637	hnrnpa1a	100	85.965	Cyprinodon_variegatus
ENSKMAG00000020859	-	57	81.771	ENSDARG00000011020	hnrnpa1a	57	61.278	Danio_rerio
ENSKMAG00000020859	-	58	56.281	ENSDORG00000026425	-	52	57.222	Dipodomys_ordii
ENSKMAG00000020859	-	58	89.175	ENSELUG00000007372	-	51	89.674	Esox_lucius
ENSKMAG00000020859	-	54	60.894	ENSGMOG00000020353	-	94	60.894	Gadus_morhua
ENSKMAG00000020859	-	53	53.933	ENSGAFG00000016803	-	53	53.933	Gambusia_affinis
ENSKMAG00000020859	-	68	96.916	ENSGAFG00000007751	-	100	90.643	Gambusia_affinis
ENSKMAG00000020859	-	63	89.888	ENSGACG00000009435	-	100	77.558	Gasterosteus_aculeatus
ENSKMAG00000020859	-	89	88.119	ENSHBUG00000005647	hnrnpa1a	100	83.776	Haplochromis_burtoni
ENSKMAG00000020859	-	69	72.845	ENSIPUG00000002023	hnrnpa1a	76	84.831	Ictalurus_punctatus
ENSKMAG00000020859	-	54	62.147	ENSIPUG00000001991	-	76	62.147	Ictalurus_punctatus
ENSKMAG00000020859	-	59	83.333	ENSIPUG00000022440	-	71	86.145	Ictalurus_punctatus
ENSKMAG00000020859	-	54	66.111	ENSJJAG00000009178	-	74	45.267	Jaculus_jaculus
ENSKMAG00000020859	-	67	91.189	ENSLBEG00000010010	hnrnpa1a	93	83.642	Labrus_bergylta
ENSKMAG00000020859	-	63	71.739	ENSMFAG00000028351	-	55	70.000	Macaca_fascicularis
ENSKMAG00000020859	-	67	97.321	ENSMAMG00000007606	-	100	83.573	Mastacembelus_armatus
ENSKMAG00000020859	-	89	88.119	ENSMZEG00005027173	hnrnpa1a	100	84.071	Maylandia_zebra
ENSKMAG00000020859	-	82	75.812	ENSMMOG00000008251	hnrnpa1a	93	85.778	Mola_mola
ENSKMAG00000020859	-	100	93.913	ENSMALG00000014091	hnrnpa1a	100	93.913	Monopterus_albus
ENSKMAG00000020859	-	53	55.367	ENSMALG00000008886	-	86	55.367	Monopterus_albus
ENSKMAG00000020859	-	89	89.769	ENSNBRG00000018441	-	100	83.481	Neolamprologus_brichardi
ENSKMAG00000020859	-	57	57.447	ENSNBRG00000014469	-	82	59.091	Neolamprologus_brichardi
ENSKMAG00000020859	-	89	89.369	ENSORLG00000008001	-	68	95.536	Oryzias_latipes
ENSKMAG00000020859	-	53	52.299	ENSORLG00000029240	-	89	52.299	Oryzias_latipes
ENSKMAG00000020859	-	89	89.369	ENSORLG00020006582	hnrnpa1a	98	95.694	Oryzias_latipes_hni
ENSKMAG00000020859	-	88	38.111	ENSORLG00020006043	-	59	51.724	Oryzias_latipes_hni
ENSKMAG00000020859	-	53	51.412	ENSORLG00020022498	-	80	52.299	Oryzias_latipes_hni
ENSKMAG00000020859	-	89	89.701	ENSORLG00015022294	-	68	95.982	Oryzias_latipes_hsok
ENSKMAG00000020859	-	100	86.647	ENSOMEG00000015959	-	100	85.163	Oryzias_melastigma
ENSKMAG00000020859	-	88	74.830	ENSPMGG00000011804	hnrnpa1a	76	88.128	Periophthalmus_magnuspinnatus
ENSKMAG00000020859	-	53	59.538	ENSPMGG00000016392	-	93	59.538	Periophthalmus_magnuspinnatus
ENSKMAG00000020859	-	67	97.333	ENSPFOG00000001825	-	100	88.270	Poecilia_formosa
ENSKMAG00000020859	-	67	97.333	ENSPMEG00000002425	-	100	88.270	Poecilia_mexicana
ENSKMAG00000020859	-	57	57.447	ENSPNYG00000020729	-	90	59.091	Pundamilia_nyererei
ENSKMAG00000020859	-	57	83.770	ENSPNAG00000021630	-	57	84.492	Pygocentrus_nattereri
ENSKMAG00000020859	-	56	83.511	ENSPNAG00000007752	hnrnpa1a	86	78.241	Pygocentrus_nattereri
ENSKMAG00000020859	-	89	76.667	ENSSMAG00000004641	hnrnpa1a	99	76.880	Scophthalmus_maximus
ENSKMAG00000020859	-	52	55.114	ENSSMAG00000010246	-	78	55.114	Scophthalmus_maximus
ENSKMAG00000020859	-	53	59.639	ENSSMAG00000010279	-	93	59.639	Scophthalmus_maximus
ENSKMAG00000020859	-	53	60.819	ENSSDUG00000002431	-	81	60.819	Seriola_dumerili
ENSKMAG00000020859	-	88	97.368	ENSSDUG00000013908	hnrnpa1a	93	88.444	Seriola_dumerili
ENSKMAG00000020859	-	88	97.814	ENSSLDG00000003718	hnrnpa1a	93	88.444	Seriola_lalandi_dorsalis
ENSKMAG00000020859	-	90	88.449	ENSSPAG00000018518	-	99	83.036	Stegastes_partitus
ENSKMAG00000020859	-	66	88.839	ENSTRUG00000020491	-	91	81.788	Takifugu_rubripes
ENSKMAG00000020859	-	74	48.361	ENSTNIG00000007398	-	69	59.777	Tetraodon_nigroviridis
ENSKMAG00000020859	-	68	86.087	ENSXCOG00000009001	-	92	95.349	Xiphophorus_couchianus
ENSKMAG00000020859	-	67	97.778	ENSXMAG00000008076	-	100	88.889	Xiphophorus_maculatus