EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000021171 (Gene tree)
Gene ID: 108244964
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 5849 bases
Position: chrLWHD01000157.1:664745-670593
Accession: 108244964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000028558	Exo_endo_phos	PF03372.23	4.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000028913	-	2965	XM_017431535	ENSKMAP00000028558	310 (aa)	XP_017287024	UPI0007F8E43E

Gene Model

Click here to download ENSKMAG00000021171's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000021171's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000021171	apex1	99	66.139	ENSG00000100823	APEX1	88	71.326	Homo_sapiens
ENSKMAG00000021171	apex1	100	88.387	ENSAPOG00000017002	apex1	100	88.387	Acanthochromis_polyacanthus
ENSKMAG00000021171	apex1	99	66.456	ENSAMEG00000005418	APEX1	99	66.456	Ailuropoda_melanoleuca
ENSKMAG00000021171	apex1	89	90.614	ENSACIG00000010653	apex1	95	90.714	Amphilophus_citrinellus
ENSKMAG00000021171	apex1	100	88.710	ENSAOCG00000009649	apex1	100	88.710	Amphiprion_ocellaris
ENSKMAG00000021171	apex1	100	89.032	ENSAPEG00000021453	apex1	100	89.032	Amphiprion_percula
ENSKMAG00000021171	apex1	99	90.615	ENSATEG00000002883	apex1	97	90.615	Anabas_testudineus
ENSKMAG00000021171	apex1	99	68.889	ENSACAG00000008099	APEX1	88	73.214	Anolis_carolinensis
ENSKMAG00000021171	apex1	99	66.772	ENSANAG00000030117	APEX1	99	66.772	Aotus_nancymaae
ENSKMAG00000021171	apex1	100	91.290	ENSACLG00000018441	apex1	100	91.290	Astatotilapia_calliptera
ENSKMAG00000021171	apex1	99	84.839	ENSAMXG00000034699	apex1	99	84.839	Astyanax_mexicanus
ENSKMAG00000021171	apex1	99	65.823	ENSBTAG00000002745	APEX1	99	65.823	Bos_taurus
ENSKMAG00000021171	apex1	91	41.958	WBGene00001372	exo-3	92	42.697	Caenorhabditis_elegans
ENSKMAG00000021171	apex1	99	66.772	ENSCJAG00000009726	APEX1	99	66.772	Callithrix_jacchus
ENSKMAG00000021171	apex1	99	66.139	ENSCAFG00000032033	APEX1	99	66.139	Canis_familiaris
ENSKMAG00000021171	apex1	99	66.139	ENSCAFG00020014377	-	99	66.139	Canis_lupus_dingo
ENSKMAG00000021171	apex1	53	59.412	ENSCAFG00020023002	-	74	68.421	Canis_lupus_dingo
ENSKMAG00000021171	apex1	99	65.823	ENSCHIG00000007298	-	99	65.823	Capra_hircus
ENSKMAG00000021171	apex1	87	56.827	ENSCHIG00000014537	-	86	55.351	Capra_hircus
ENSKMAG00000021171	apex1	99	65.506	ENSTSYG00000034813	APEX1	99	65.506	Carlito_syrichta
ENSKMAG00000021171	apex1	85	64.234	ENSCAPG00000016235	APEX1	91	70.763	Cavia_aperea
ENSKMAG00000021171	apex1	99	66.772	ENSCPOG00000030909	APEX1	88	71.326	Cavia_porcellus
ENSKMAG00000021171	apex1	99	57.595	ENSCCAG00000031931	-	87	61.649	Cebus_capucinus
ENSKMAG00000021171	apex1	99	66.772	ENSCCAG00000033056	-	99	66.772	Cebus_capucinus
ENSKMAG00000021171	apex1	99	65.823	ENSCATG00000015580	APEX1	88	70.968	Cercocebus_atys
ENSKMAG00000021171	apex1	99	66.456	ENSCLAG00000001002	APEX1	88	71.326	Chinchilla_lanigera
ENSKMAG00000021171	apex1	99	66.139	ENSCSAG00000016670	-	88	71.326	Chlorocebus_sabaeus
ENSKMAG00000021171	apex1	99	66.139	ENSCSAG00000016685	-	88	71.326	Chlorocebus_sabaeus
ENSKMAG00000021171	apex1	99	70.570	ENSCPBG00000009567	APEX1	87	76.619	Chrysemys_picta_bellii
ENSKMAG00000021171	apex1	98	55.263	ENSCING00000008137	-	85	59.551	Ciona_intestinalis
ENSKMAG00000021171	apex1	99	47.619	ENSCSAVG00000007144	-	100	53.101	Ciona_savignyi
ENSKMAG00000021171	apex1	99	66.456	ENSCANG00000030726	APEX1	99	66.456	Colobus_angolensis_palliatus
ENSKMAG00000021171	apex1	99	64.762	ENSCGRG00001017046	Apex1	88	69.892	Cricetulus_griseus_chok1gshd
ENSKMAG00000021171	apex1	99	64.762	ENSCGRG00000008984	Apex1	88	69.892	Cricetulus_griseus_crigri
ENSKMAG00000021171	apex1	100	86.452	ENSCSEG00000017499	apex1	99	86.452	Cynoglossus_semilaevis
ENSKMAG00000021171	apex1	100	91.935	ENSCVAG00000022075	apex1	100	91.935	Cyprinodon_variegatus
ENSKMAG00000021171	apex1	99	83.172	ENSDARG00000045843	apex1	99	83.172	Danio_rerio
ENSKMAG00000021171	apex1	99	63.291	ENSDNOG00000042234	APEX1	94	63.291	Dasypus_novemcinctus
ENSKMAG00000021171	apex1	99	66.139	ENSDORG00000001616	Apex1	88	70.968	Dipodomys_ordii
ENSKMAG00000021171	apex1	99	66.772	ENSETEG00000004855	-	99	66.772	Echinops_telfairi
ENSKMAG00000021171	apex1	76	59.664	ENSEBUG00000000622	-	92	59.664	Eptatretus_burgeri
ENSKMAG00000021171	apex1	99	66.456	ENSEASG00005017489	APEX1	65	71.685	Equus_asinus_asinus
ENSKMAG00000021171	apex1	99	66.456	ENSECAG00000022325	APEX1	72	71.685	Equus_caballus
ENSKMAG00000021171	apex1	86	70.632	ENSEEUG00000012569	APEX1	93	70.632	Erinaceus_europaeus
ENSKMAG00000021171	apex1	99	81.290	ENSELUG00000021706	apex1	99	83.226	Esox_lucius
ENSKMAG00000021171	apex1	99	66.772	ENSFCAG00000030869	APEX1	88	71.685	Felis_catus
ENSKMAG00000021171	apex1	99	67.089	ENSFDAG00000006120	APEX1	88	72.043	Fukomys_damarensis
ENSKMAG00000021171	apex1	100	90.645	ENSFHEG00000009031	apex1	83	90.645	Fundulus_heteroclitus
ENSKMAG00000021171	apex1	100	75.484	ENSGMOG00000007943	apex1	99	75.484	Gadus_morhua
ENSKMAG00000021171	apex1	100	92.258	ENSGAFG00000005311	apex1	100	92.258	Gambusia_affinis
ENSKMAG00000021171	apex1	100	88.065	ENSGACG00000019497	apex1	99	89.850	Gasterosteus_aculeatus
ENSKMAG00000021171	apex1	99	70.570	ENSGAGG00000014999	APEX1	87	76.619	Gopherus_agassizii
ENSKMAG00000021171	apex1	99	66.456	ENSGGOG00000002128	APEX1	88	71.685	Gorilla_gorilla
ENSKMAG00000021171	apex1	100	90.968	ENSHBUG00000005894	apex1	100	90.968	Haplochromis_burtoni
ENSKMAG00000021171	apex1	99	66.772	ENSHGLG00000002848	APEX1	88	71.685	Heterocephalus_glaber_female
ENSKMAG00000021171	apex1	99	66.772	ENSHGLG00100017878	APEX1	88	71.685	Heterocephalus_glaber_male
ENSKMAG00000021171	apex1	100	86.174	ENSHCOG00000009961	apex1	100	86.174	Hippocampus_comes
ENSKMAG00000021171	apex1	99	85.161	ENSIPUG00000005799	apex1	99	85.161	Ictalurus_punctatus
ENSKMAG00000021171	apex1	99	66.772	ENSSTOG00000010096	APEX1	99	66.772	Ictidomys_tridecemlineatus
ENSKMAG00000021171	apex1	99	58.544	ENSJJAG00000003660	-	88	62.366	Jaculus_jaculus
ENSKMAG00000021171	apex1	99	65.506	ENSJJAG00000012067	-	88	70.251	Jaculus_jaculus
ENSKMAG00000021171	apex1	90	62.366	ENSJJAG00000020465	-	90	62.366	Jaculus_jaculus
ENSKMAG00000021171	apex1	100	87.097	ENSLBEG00000010248	apex1	100	87.097	Labrus_bergylta
ENSKMAG00000021171	apex1	99	72.930	ENSLACG00000008617	APEX1	99	72.436	Latimeria_chalumnae
ENSKMAG00000021171	apex1	99	77.316	ENSLOCG00000015516	apex1	99	76.997	Lepisosteus_oculatus
ENSKMAG00000021171	apex1	99	66.772	ENSLAFG00000021872	APEX1	99	66.772	Loxodonta_africana
ENSKMAG00000021171	apex1	99	65.823	ENSMFAG00000002565	APEX1	88	70.968	Macaca_fascicularis
ENSKMAG00000021171	apex1	99	65.823	ENSMMUG00000048039	APEX1	88	70.968	Macaca_mulatta
ENSKMAG00000021171	apex1	99	66.250	ENSMNEG00000036944	APEX1	88	70.968	Macaca_nemestrina
ENSKMAG00000021171	apex1	99	65.823	ENSMLEG00000042125	APEX1	88	70.968	Mandrillus_leucophaeus
ENSKMAG00000021171	apex1	100	90.645	ENSMAMG00000023526	apex1	100	90.645	Mastacembelus_armatus
ENSKMAG00000021171	apex1	100	91.290	ENSMZEG00005014187	apex1	100	91.290	Maylandia_zebra
ENSKMAG00000021171	apex1	99	64.873	ENSMAUG00000013994	Apex1	88	69.534	Mesocricetus_auratus
ENSKMAG00000021171	apex1	99	65.506	ENSMICG00000043554	APEX1	88	70.609	Microcebus_murinus
ENSKMAG00000021171	apex1	99	66.349	ENSMOCG00000013721	Apex1	99	66.349	Microtus_ochrogaster
ENSKMAG00000021171	apex1	100	84.244	ENSMMOG00000010031	apex1	97	84.244	Mola_mola
ENSKMAG00000021171	apex1	91	69.258	ENSMODG00000007125	APEX1	87	69.892	Monodelphis_domestica
ENSKMAG00000021171	apex1	90	84.286	ENSMALG00000011699	apex1	75	84.286	Monopterus_albus
ENSKMAG00000021171	apex1	99	67.197	MGP_CAROLIEiJ_G0019209	Apex1	99	67.197	Mus_caroli
ENSKMAG00000021171	apex1	99	66.984	ENSMUSG00000035960	Apex1	99	66.984	Mus_musculus
ENSKMAG00000021171	apex1	99	66.984	MGP_PahariEiJ_G0030232	Apex1	99	66.984	Mus_pahari
ENSKMAG00000021171	apex1	99	66.984	MGP_SPRETEiJ_G0020101	Apex1	99	66.984	Mus_spretus
ENSKMAG00000021171	apex1	99	65.409	ENSMLUG00000028957	APEX1	87	70.609	Myotis_lucifugus
ENSKMAG00000021171	apex1	87	52.347	ENSNGAG00000021748	-	85	52.347	Nannospalax_galili
ENSKMAG00000021171	apex1	99	65.506	ENSNGAG00000002725	-	99	65.506	Nannospalax_galili
ENSKMAG00000021171	apex1	100	91.290	ENSNBRG00000005334	apex1	91	91.290	Neolamprologus_brichardi
ENSKMAG00000021171	apex1	99	65.823	ENSNLEG00000010839	APEX1	89	70.968	Nomascus_leucogenys
ENSKMAG00000021171	apex1	99	65.605	ENSMEUG00000014519	APEX1	89	68.817	Notamacropus_eugenii
ENSKMAG00000021171	apex1	99	65.823	ENSOPRG00000014029	APEX1	88	70.251	Ochotona_princeps
ENSKMAG00000021171	apex1	99	51.553	ENSODEG00000006583	-	87	54.737	Octodon_degus
ENSKMAG00000021171	apex1	99	66.456	ENSODEG00000001703	-	88	71.326	Octodon_degus
ENSKMAG00000021171	apex1	95	52.721	ENSODEG00000004777	-	83	58.333	Octodon_degus
ENSKMAG00000021171	apex1	100	91.290	ENSONIG00000012089	apex1	100	91.290	Oreochromis_niloticus
ENSKMAG00000021171	apex1	92	68.070	ENSOANG00000008836	APEX1	68	69.455	Ornithorhynchus_anatinus
ENSKMAG00000021171	apex1	99	66.772	ENSOCUG00000005022	APEX1	99	66.772	Oryctolagus_cuniculus
ENSKMAG00000021171	apex1	100	89.711	ENSORLG00000012378	apex1	100	89.711	Oryzias_latipes
ENSKMAG00000021171	apex1	100	89.711	ENSORLG00020021371	apex1	100	89.711	Oryzias_latipes_hni
ENSKMAG00000021171	apex1	100	89.711	ENSORLG00015020089	apex1	100	89.711	Oryzias_latipes_hsok
ENSKMAG00000021171	apex1	100	88.746	ENSOMEG00000018876	apex1	100	88.746	Oryzias_melastigma
ENSKMAG00000021171	apex1	90	63.799	ENSOGAG00000029355	-	89	63.799	Otolemur_garnettii
ENSKMAG00000021171	apex1	99	66.456	ENSOGAG00000013335	-	88	71.685	Otolemur_garnettii
ENSKMAG00000021171	apex1	99	66.139	ENSOARG00000019740	-	99	66.139	Ovis_aries
ENSKMAG00000021171	apex1	96	63.399	ENSOARG00000001876	-	99	63.399	Ovis_aries
ENSKMAG00000021171	apex1	98	56.250	ENSOARG00000014424	-	89	58.423	Ovis_aries
ENSKMAG00000021171	apex1	99	66.139	ENSPPAG00000038760	APEX1	89	71.326	Pan_paniscus
ENSKMAG00000021171	apex1	99	66.772	ENSPPRG00000011794	APEX1	99	66.772	Panthera_pardus
ENSKMAG00000021171	apex1	99	66.772	ENSPTIG00000014829	APEX1	88	71.685	Panthera_tigris_altaica
ENSKMAG00000021171	apex1	99	66.139	ENSPTRG00000006093	APEX1	89	71.326	Pan_troglodytes
ENSKMAG00000021171	apex1	99	65.823	ENSPANG00000022757	APEX1	88	70.968	Papio_anubis
ENSKMAG00000021171	apex1	89	85.507	ENSPKIG00000003504	apex1	99	83.013	Paramormyrops_kingsleyae
ENSKMAG00000021171	apex1	88	75.824	ENSPMGG00000016596	apex1	80	75.824	Periophthalmus_magnuspinnatus
ENSKMAG00000021171	apex1	99	65.714	ENSPEMG00000019097	Apex1	99	65.714	Peromyscus_maniculatus_bairdii
ENSKMAG00000021171	apex1	93	72.165	ENSPMAG00000007275	-	95	73.477	Petromyzon_marinus
ENSKMAG00000021171	apex1	90	69.534	ENSPCIG00000023274	APEX1	87	69.534	Phascolarctos_cinereus
ENSKMAG00000021171	apex1	100	91.935	ENSPFOG00000004178	apex1	100	91.935	Poecilia_formosa
ENSKMAG00000021171	apex1	100	92.258	ENSPLAG00000012779	apex1	100	92.258	Poecilia_latipinna
ENSKMAG00000021171	apex1	100	91.935	ENSPMEG00000019623	apex1	100	91.935	Poecilia_mexicana
ENSKMAG00000021171	apex1	100	90.645	ENSPREG00000014298	apex1	99	90.645	Poecilia_reticulata
ENSKMAG00000021171	apex1	99	65.823	ENSPPYG00000005565	APEX1	88	70.968	Pongo_abelii
ENSKMAG00000021171	apex1	99	64.557	ENSPCAG00000010376	APEX1	99	64.557	Procavia_capensis
ENSKMAG00000021171	apex1	99	65.823	ENSPCOG00000021564	APEX1	88	70.968	Propithecus_coquereli
ENSKMAG00000021171	apex1	99	65.409	ENSPVAG00000010736	APEX1	87	70.968	Pteropus_vampyrus
ENSKMAG00000021171	apex1	100	91.613	ENSPNYG00000023940	apex1	100	91.613	Pundamilia_nyererei
ENSKMAG00000021171	apex1	92	84.615	ENSPNAG00000020897	apex1	96	84.561	Pygocentrus_nattereri
ENSKMAG00000021171	apex1	99	66.349	ENSRNOG00000009663	Apex1	99	66.349	Rattus_norvegicus
ENSKMAG00000021171	apex1	99	66.139	ENSRBIG00000038325	APEX1	87	71.326	Rhinopithecus_bieti
ENSKMAG00000021171	apex1	99	66.772	ENSSBOG00000018921	-	99	66.772	Saimiri_boliviensis_boliviensis
ENSKMAG00000021171	apex1	99	59.355	ENSSBOG00000031372	-	91	62.724	Saimiri_boliviensis_boliviensis
ENSKMAG00000021171	apex1	100	63.694	ENSSHAG00000013524	APEX1	97	63.694	Sarcophilus_harrisii
ENSKMAG00000021171	apex1	99	80.906	ENSSFOG00015001948	apex1	99	80.906	Scleropages_formosus
ENSKMAG00000021171	apex1	100	84.444	ENSSMAG00000013348	apex1	100	85.079	Scophthalmus_maximus
ENSKMAG00000021171	apex1	100	90.000	ENSSDUG00000016377	apex1	99	90.000	Seriola_dumerili
ENSKMAG00000021171	apex1	100	89.677	ENSSLDG00000023005	apex1	100	89.677	Seriola_lalandi_dorsalis
ENSKMAG00000021171	apex1	90	74.286	ENSSPUG00000000531	APEX1	94	74.194	Sphenodon_punctatus
ENSKMAG00000021171	apex1	100	87.419	ENSSPAG00000000458	apex1	100	87.419	Stegastes_partitus
ENSKMAG00000021171	apex1	95	39.735	ENSSSCG00000039705	-	89	41.155	Sus_scrofa
ENSKMAG00000021171	apex1	99	66.139	ENSSSCG00000040060	-	87	71.739	Sus_scrofa
ENSKMAG00000021171	apex1	76	59.574	ENSTGUG00000014378	APEX1	100	59.574	Taeniopygia_guttata
ENSKMAG00000021171	apex1	100	82.109	ENSTRUG00000004268	apex1	95	83.067	Takifugu_rubripes
ENSKMAG00000021171	apex1	100	85.484	ENSTNIG00000005778	apex1	100	85.484	Tetraodon_nigroviridis
ENSKMAG00000021171	apex1	99	63.608	ENSTBEG00000006405	APEX1	99	63.608	Tupaia_belangeri
ENSKMAG00000021171	apex1	76	69.787	ENSTTRG00000007860	APEX1	100	69.787	Tursiops_truncatus
ENSKMAG00000021171	apex1	99	66.456	ENSUAMG00000010457	APEX1	99	66.456	Ursus_americanus
ENSKMAG00000021171	apex1	99	66.456	ENSUMAG00000009178	APEX1	99	66.456	Ursus_maritimus
ENSKMAG00000021171	apex1	76	65.957	ENSVPAG00000005083	APEX1	100	65.957	Vicugna_pacos
ENSKMAG00000021171	apex1	99	65.823	ENSVVUG00000009010	APEX1	99	65.823	Vulpes_vulpes
ENSKMAG00000021171	apex1	99	69.108	ENSXETG00000024773	apex1	99	69.108	Xenopus_tropicalis
ENSKMAG00000021171	apex1	100	91.935	ENSXCOG00000015233	apex1	99	91.935	Xiphophorus_couchianus
ENSKMAG00000021171	apex1	100	91.935	ENSXMAG00000006195	apex1	100	91.935	Xiphophorus_maculatus