EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000021356 (Gene tree)
Gene ID: 108238650
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 18474 bases
Position: chrLWHD01000056.1:2060314-2078787
Accession: 108238650
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000028936	XRN_N	PF03159.18	1.4e-96	1	1
ENSKMAP00000028920	XRN_N	PF03159.18	2e-96	1	1
ENSKMAP00000028942	XRN_N	PF03159.18	4.5e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000029283	-	4893	-	ENSKMAP00000028920	1630 (aa)	-	-
ENSKMAT00000029305	-	1479	-	ENSKMAP00000028942	492 (aa)	-	-
ENSKMAT00000029299	-	4779	XM_017420888	ENSKMAP00000028936	1592 (aa)	XP_017276377	-

Gene Model

Click here to download ENSKMAG00000021356's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03008	Ribosome biogenesis in eukaryotes	KEGG
kmr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000021356's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000021356	xrn1	94	76.160	ENSG00000114127	XRN1	96	94.175	Homo_sapiens
ENSKMAG00000021356	xrn1	95	86.441	ENSAPOG00000000622	xrn1	94	84.778	Acanthochromis_polyacanthus
ENSKMAG00000021356	xrn1	94	74.843	ENSAMEG00000012538	XRN1	94	61.371	Ailuropoda_melanoleuca
ENSKMAG00000021356	xrn1	95	84.824	ENSACIG00000001057	xrn1	99	79.114	Amphilophus_citrinellus
ENSKMAG00000021356	xrn1	100	79.927	ENSAOCG00000014097	xrn1	100	79.927	Amphiprion_ocellaris
ENSKMAG00000021356	xrn1	99	81.319	ENSAPEG00000006620	xrn1	98	82.666	Amphiprion_percula
ENSKMAG00000021356	xrn1	95	78.692	ENSATEG00000009752	xrn1	100	73.357	Anabas_testudineus
ENSKMAG00000021356	xrn1	94	76.221	ENSAPLG00000004905	XRN1	100	58.973	Anas_platyrhynchos
ENSKMAG00000021356	xrn1	94	75.636	ENSACAG00000004985	XRN1	92	67.704	Anolis_carolinensis
ENSKMAG00000021356	xrn1	94	76.211	ENSANAG00000029013	XRN1	99	71.315	Aotus_nancymaae
ENSKMAG00000021356	xrn1	95	84.277	ENSACLG00000004806	xrn1	99	77.121	Astatotilapia_calliptera
ENSKMAG00000021356	xrn1	94	72.436	ENSAMXG00000019370	xrn1	95	96.117	Astyanax_mexicanus
ENSKMAG00000021356	xrn1	94	74.843	ENSBTAG00000011524	XRN1	94	61.185	Bos_taurus
ENSKMAG00000021356	xrn1	94	46.642	WBGene00012730	xrn-1	80	37.681	Caenorhabditis_elegans
ENSKMAG00000021356	xrn1	94	75.949	ENSCJAG00000001872	XRN1	97	62.454	Callithrix_jacchus
ENSKMAG00000021356	xrn1	94	77.495	ENSCAFG00000007783	XRN1	94	61.636	Canis_familiaris
ENSKMAG00000021356	xrn1	94	77.004	ENSCAFG00020009120	XRN1	99	75.835	Canis_lupus_dingo
ENSKMAG00000021356	xrn1	94	74.423	ENSCHIG00000019192	XRN1	94	61.384	Capra_hircus
ENSKMAG00000021356	xrn1	94	76.371	ENSTSYG00000002705	XRN1	94	62.384	Carlito_syrichta
ENSKMAG00000021356	xrn1	94	56.962	ENSCAPG00000004604	-	94	85.581	Cavia_aperea
ENSKMAG00000021356	xrn1	94	76.160	ENSCCAG00000034800	XRN1	99	77.990	Cebus_capucinus
ENSKMAG00000021356	xrn1	94	75.949	ENSCATG00000041794	XRN1	94	61.355	Cercocebus_atys
ENSKMAG00000021356	xrn1	94	76.371	ENSCLAG00000001451	XRN1	99	77.955	Chinchilla_lanigera
ENSKMAG00000021356	xrn1	94	75.949	ENSCSAG00000011265	XRN1	94	60.872	Chlorocebus_sabaeus
ENSKMAG00000021356	xrn1	94	57.051	ENSCING00000001334	-	95	71.816	Ciona_intestinalis
ENSKMAG00000021356	xrn1	99	56.033	ENSCSAVG00000008584	-	93	50.820	Ciona_savignyi
ENSKMAG00000021356	xrn1	94	75.949	ENSCANG00000037495	XRN1	99	77.796	Colobus_angolensis_palliatus
ENSKMAG00000021356	xrn1	94	76.582	ENSCGRG00001019411	Xrn1	99	78.754	Cricetulus_griseus_chok1gshd
ENSKMAG00000021356	xrn1	94	76.582	ENSCGRG00000012464	Xrn1	99	78.754	Cricetulus_griseus_crigri
ENSKMAG00000021356	xrn1	95	84.946	ENSCSEG00000021285	xrn1	94	97.115	Cynoglossus_semilaevis
ENSKMAG00000021356	xrn1	95	84.731	ENSCVAG00000013089	xrn1	99	86.438	Cyprinodon_variegatus
ENSKMAG00000021356	xrn1	95	81.172	ENSDARG00000091652	xrn1	98	82.664	Danio_rerio
ENSKMAG00000021356	xrn1	94	76.421	ENSDORG00000013833	Xrn1	94	61.243	Dipodomys_ordii
ENSKMAG00000021356	xrn1	95	51.059	FBgn0020261	pcm	71	42.083	Drosophila_melanogaster
ENSKMAG00000021356	xrn1	86	68.468	ENSETEG00000003978	XRN1	82	68.548	Echinops_telfairi
ENSKMAG00000021356	xrn1	94	77.350	ENSEASG00005002687	XRN1	99	78.115	Equus_asinus_asinus
ENSKMAG00000021356	xrn1	94	76.160	ENSECAG00000008301	XRN1	100	59.896	Equus_caballus
ENSKMAG00000021356	xrn1	93	76.445	ENSEEUG00000011323	XRN1	81	71.078	Erinaceus_europaeus
ENSKMAG00000021356	xrn1	95	79.834	ENSELUG00000000169	xrn1	100	68.667	Esox_lucius
ENSKMAG00000021356	xrn1	94	63.866	ENSFCAG00000027589	XRN1	99	79.869	Felis_catus
ENSKMAG00000021356	xrn1	94	75.899	ENSFALG00000007021	XRN1	98	67.835	Ficedula_albicollis
ENSKMAG00000021356	xrn1	94	76.371	ENSFDAG00000020494	XRN1	99	77.583	Fukomys_damarensis
ENSKMAG00000021356	xrn1	94	77.495	ENSFHEG00000017356	-	98	81.538	Fundulus_heteroclitus
ENSKMAG00000021356	xrn1	95	81.156	ENSGMOG00000006396	xrn1	88	74.374	Gadus_morhua
ENSKMAG00000021356	xrn1	94	75.527	ENSGALG00000002706	XRN1	98	68.157	Gallus_gallus
ENSKMAG00000021356	xrn1	95	83.613	ENSGACG00000014328	xrn1	100	73.110	Gasterosteus_aculeatus
ENSKMAG00000021356	xrn1	94	76.632	ENSGAGG00000017535	XRN1	94	68.221	Gopherus_agassizii
ENSKMAG00000021356	xrn1	94	75.316	ENSGGOG00000008047	XRN1	94	61.426	Gorilla_gorilla
ENSKMAG00000021356	xrn1	100	77.041	ENSHBUG00000005908	xrn1	95	82.839	Haplochromis_burtoni
ENSKMAG00000021356	xrn1	94	76.371	ENSHGLG00000014476	XRN1	99	77.266	Heterocephalus_glaber_female
ENSKMAG00000021356	xrn1	94	76.371	ENSHGLG00100015130	XRN1	99	77.266	Heterocephalus_glaber_male
ENSKMAG00000021356	xrn1	95	82.008	ENSHCOG00000014062	xrn1	99	81.030	Hippocampus_comes
ENSKMAG00000021356	xrn1	95	79.707	ENSIPUG00000015229	xrn1	99	68.109	Ictalurus_punctatus
ENSKMAG00000021356	xrn1	94	76.211	ENSSTOG00000013552	XRN1	99	77.990	Ictidomys_tridecemlineatus
ENSKMAG00000021356	xrn1	94	76.744	ENSJJAG00000010863	Xrn1	99	78.000	Jaculus_jaculus
ENSKMAG00000021356	xrn1	95	86.081	ENSLBEG00000018656	xrn1	97	98.058	Labrus_bergylta
ENSKMAG00000021356	xrn1	94	75.264	ENSLACG00000009020	XRN1	100	58.380	Latimeria_chalumnae
ENSKMAG00000021356	xrn1	95	79.872	ENSLOCG00000007944	xrn1	98	72.235	Lepisosteus_oculatus
ENSKMAG00000021356	xrn1	94	76.371	ENSLAFG00000015426	XRN1	100	71.242	Loxodonta_africana
ENSKMAG00000021356	xrn1	94	75.949	ENSMFAG00000032599	XRN1	94	61.355	Macaca_fascicularis
ENSKMAG00000021356	xrn1	94	75.949	ENSMMUG00000014038	XRN1	94	61.355	Macaca_mulatta
ENSKMAG00000021356	xrn1	94	76.160	ENSMNEG00000034217	XRN1	94	61.379	Macaca_nemestrina
ENSKMAG00000021356	xrn1	70	73.371	ENSMLEG00000041349	-	99	78.947	Mandrillus_leucophaeus
ENSKMAG00000021356	xrn1	95	86.170	ENSMAMG00000013219	xrn1	92	88.337	Mastacembelus_armatus
ENSKMAG00000021356	xrn1	95	84.277	ENSMZEG00005015099	xrn1	99	77.180	Maylandia_zebra
ENSKMAG00000021356	xrn1	94	71.548	ENSMGAG00000006333	XRN1	94	59.559	Meleagris_gallopavo
ENSKMAG00000021356	xrn1	94	76.632	ENSMICG00000048948	XRN1	96	94.175	Microcebus_murinus
ENSKMAG00000021356	xrn1	94	75.949	ENSMOCG00000008665	Xrn1	99	78.275	Microtus_ochrogaster
ENSKMAG00000021356	xrn1	92	85.463	ENSMMOG00000020896	-	96	81.426	Mola_mola
ENSKMAG00000021356	xrn1	94	75.687	ENSMODG00000021236	XRN1	94	60.507	Monodelphis_domestica
ENSKMAG00000021356	xrn1	100	75.904	ENSMALG00000004098	xrn1	100	76.084	Monopterus_albus
ENSKMAG00000021356	xrn1	94	75.949	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSKMAG00000021356	xrn1	94	75.738	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSKMAG00000021356	xrn1	94	74.841	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSKMAG00000021356	xrn1	94	75.738	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSKMAG00000021356	xrn1	94	76.261	ENSMPUG00000012040	XRN1	94	61.427	Mustela_putorius_furo
ENSKMAG00000021356	xrn1	94	76.160	ENSMLUG00000016885	XRN1	94	61.229	Myotis_lucifugus
ENSKMAG00000021356	xrn1	94	72.093	ENSNGAG00000023964	Xrn1	99	74.522	Nannospalax_galili
ENSKMAG00000021356	xrn1	94	76.160	ENSNLEG00000004726	XRN1	94	62.082	Nomascus_leucogenys
ENSKMAG00000021356	xrn1	65	94.845	ENSMEUG00000014473	-	59	95.146	Notamacropus_eugenii
ENSKMAG00000021356	xrn1	85	66.667	ENSOPRG00000007337	-	64	67.628	Ochotona_princeps
ENSKMAG00000021356	xrn1	95	85.865	ENSONIG00000016673	xrn1	99	81.969	Oreochromis_niloticus
ENSKMAG00000021356	xrn1	88	75.909	ENSOANG00000006735	XRN1	94	57.218	Ornithorhynchus_anatinus
ENSKMAG00000021356	xrn1	94	76.533	ENSOCUG00000001861	XRN1	94	61.048	Oryctolagus_cuniculus
ENSKMAG00000021356	xrn1	95	86.287	ENSORLG00000013005	xrn1	98	77.541	Oryzias_latipes
ENSKMAG00000021356	xrn1	95	87.527	ENSORLG00020005559	xrn1	100	77.600	Oryzias_latipes_hni
ENSKMAG00000021356	xrn1	95	87.312	ENSORLG00015022523	xrn1	100	77.719	Oryzias_latipes_hsok
ENSKMAG00000021356	xrn1	95	86.653	ENSOMEG00000015397	xrn1	100	84.401	Oryzias_melastigma
ENSKMAG00000021356	xrn1	94	68.894	ENSOGAG00000000170	XRN1	100	58.001	Otolemur_garnettii
ENSKMAG00000021356	xrn1	94	74.633	ENSOARG00000006343	XRN1	94	61.722	Ovis_aries
ENSKMAG00000021356	xrn1	94	75.527	ENSPPAG00000010180	XRN1	94	61.426	Pan_paniscus
ENSKMAG00000021356	xrn1	94	76.211	ENSPPRG00000007125	XRN1	94	62.302	Panthera_pardus
ENSKMAG00000021356	xrn1	94	76.261	ENSPTIG00000021081	XRN1	94	62.302	Panthera_tigris_altaica
ENSKMAG00000021356	xrn1	94	75.527	ENSPTRG00000015482	XRN1	94	61.487	Pan_troglodytes
ENSKMAG00000021356	xrn1	94	75.949	ENSPANG00000010638	XRN1	94	61.355	Papio_anubis
ENSKMAG00000021356	xrn1	94	74.066	ENSPSIG00000018050	XRN1	95	61.141	Pelodiscus_sinensis
ENSKMAG00000021356	xrn1	95	84.829	ENSPMGG00000002648	xrn1	100	86.817	Periophthalmus_magnuspinnatus
ENSKMAG00000021356	xrn1	94	76.371	ENSPEMG00000020610	Xrn1	99	78.594	Peromyscus_maniculatus_bairdii
ENSKMAG00000021356	xrn1	94	50.187	ENSPMAG00000002975	xrn1	90	76.437	Petromyzon_marinus
ENSKMAG00000021356	xrn1	94	76.940	ENSPCIG00000028735	XRN1	99	76.592	Phascolarctos_cinereus
ENSKMAG00000021356	xrn1	95	84.342	ENSPFOG00000013932	xrn1	99	81.424	Poecilia_formosa
ENSKMAG00000021356	xrn1	95	85.865	ENSPLAG00000021653	xrn1	99	81.795	Poecilia_latipinna
ENSKMAG00000021356	xrn1	95	85.325	ENSPMEG00000003076	xrn1	95	81.752	Poecilia_mexicana
ENSKMAG00000021356	xrn1	95	84.167	ENSPREG00000021147	xrn1	100	77.616	Poecilia_reticulata
ENSKMAG00000021356	xrn1	94	75.949	ENSPPYG00000014172	XRN1	100	59.148	Pongo_abelii
ENSKMAG00000021356	xrn1	93	75.745	ENSPCAG00000005638	XRN1	96	59.235	Procavia_capensis
ENSKMAG00000021356	xrn1	94	76.000	ENSPCOG00000013089	XRN1	99	77.636	Propithecus_coquereli
ENSKMAG00000021356	xrn1	85	85.260	ENSPVAG00000016265	XRN1	81	85.549	Pteropus_vampyrus
ENSKMAG00000021356	xrn1	95	85.263	ENSPNYG00000010570	xrn1	99	77.123	Pundamilia_nyererei
ENSKMAG00000021356	xrn1	95	75.417	ENSPNAG00000023531	xrn1	99	66.843	Pygocentrus_nattereri
ENSKMAG00000021356	xrn1	94	75.738	ENSRNOG00000042951	Xrn1	100	59.208	Rattus_norvegicus
ENSKMAG00000021356	xrn1	94	75.738	ENSRBIG00000041227	XRN1	94	62.000	Rhinopithecus_bieti
ENSKMAG00000021356	xrn1	70	73.295	ENSRROG00000033764	-	100	94.175	Rhinopithecus_roxellana
ENSKMAG00000021356	xrn1	86	48.872	YGL173C	XRN1	77	52.717	Saccharomyces_cerevisiae
ENSKMAG00000021356	xrn1	94	76.160	ENSSBOG00000029561	XRN1	94	61.722	Saimiri_boliviensis_boliviensis
ENSKMAG00000021356	xrn1	94	75.899	ENSSHAG00000016207	XRN1	100	57.632	Sarcophilus_harrisii
ENSKMAG00000021356	xrn1	95	78.992	ENSSFOG00015024211	xrn1	100	66.012	Scleropages_formosus
ENSKMAG00000021356	xrn1	95	84.696	ENSSMAG00000016534	xrn1	100	80.259	Scophthalmus_maximus
ENSKMAG00000021356	xrn1	95	86.287	ENSSDUG00000010306	xrn1	97	85.185	Seriola_dumerili
ENSKMAG00000021356	xrn1	95	86.498	ENSSLDG00000021543	xrn1	100	82.088	Seriola_lalandi_dorsalis
ENSKMAG00000021356	xrn1	94	75.687	ENSSARG00000007741	-	75	64.979	Sorex_araneus
ENSKMAG00000021356	xrn1	96	77.215	ENSSPUG00000010779	-	95	77.919	Sphenodon_punctatus
ENSKMAG00000021356	xrn1	94	87.872	ENSSPAG00000009856	-	95	86.653	Stegastes_partitus
ENSKMAG00000021356	xrn1	94	73.251	ENSTGUG00000008498	XRN1	100	58.992	Taeniopygia_guttata
ENSKMAG00000021356	xrn1	95	84.797	ENSTRUG00000004895	xrn1	96	86.334	Takifugu_rubripes
ENSKMAG00000021356	xrn1	95	84.567	ENSTNIG00000017615	xrn1	100	69.800	Tetraodon_nigroviridis
ENSKMAG00000021356	xrn1	78	84.677	ENSTBEG00000003256	XRN1	78	83.679	Tupaia_belangeri
ENSKMAG00000021356	xrn1	94	72.537	ENSTTRG00000012914	XRN1	94	57.904	Tursiops_truncatus
ENSKMAG00000021356	xrn1	94	72.340	ENSUAMG00000001608	XRN1	99	74.121	Ursus_americanus
ENSKMAG00000021356	xrn1	94	75.472	ENSUMAG00000013625	XRN1	100	59.119	Ursus_maritimus
ENSKMAG00000021356	xrn1	94	75.840	ENSVPAG00000004690	XRN1	94	59.455	Vicugna_pacos
ENSKMAG00000021356	xrn1	95	76.923	ENSVVUG00000024461	XRN1	99	78.275	Vulpes_vulpes
ENSKMAG00000021356	xrn1	95	75.681	ENSXETG00000000619	xrn1	99	85.039	Xenopus_tropicalis
ENSKMAG00000021356	xrn1	95	86.296	ENSXCOG00000007917	xrn1	100	74.852	Xiphophorus_couchianus
ENSKMAG00000021356	xrn1	95	85.806	ENSXMAG00000018320	xrn1	99	84.660	Xiphophorus_maculatus