EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSKMAG00000021861 (Gene tree)
Gene ID
108234678
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Kryptolebias_marmoratus
Status
putative
Strand
Plus strand
Length
3616 bases
Position
chrLWHD01000028.1:2866039-2869654
Accession
108234678
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSKMAP00000029523LSMPF01423.221.2e-1911
ENSKMAP00000029526LSMPF01423.221.6e-1411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSKMAT00000029892-282-ENSKMAP0000002952693 (aa)--
ENSKMAT00000029889-640XM_017414052ENSKMAP0000002952391 (aa)XP_017269541UPI0006B3975F
Gene Model
Click here to download ENSKMAG00000021861's gene model file
Pathways
Pathway IDPathway NameSource
kmr03018RNA degradationKEGG
kmr03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000021861's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSKMAG00000021861lsm58234.667ENSKMAG00000015182lsm37434.667
ENSKMAG00000021861lsm58630.488ENSKMAG00000005461snrpe8730.488
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSKMAG00000021861lsm510094.505ENSG00000106355LSM510095.161Homo_sapiens
ENSKMAG00000021861lsm510098.901ENSAPOG00000020779LSM510098.901Acanthochromis_polyacanthus
ENSKMAG00000021861lsm59097.561ENSAPOG00000011743LSM510098.387Acanthochromis_polyacanthus
ENSKMAG00000021861lsm510094.505ENSAMEG00000006700LSM510094.505Ailuropoda_melanoleuca
ENSKMAG00000021861lsm59658.621ENSACIG00000019185lsm59858.621Amphilophus_citrinellus
ENSKMAG00000021861lsm510098.901ENSAOCG00000001636lsm510098.901Amphiprion_ocellaris
ENSKMAG00000021861lsm56898.387ENSAPEG00000008201lsm510098.387Amphiprion_percula
ENSKMAG00000021861lsm510098.901ENSAPEG00000008151lsm510098.901Amphiprion_percula
ENSKMAG00000021861lsm59095.122ENSATEG00000020470lsm510060.440Anabas_testudineus
ENSKMAG00000021861lsm58195.946ENSAPLG00000008171LSM510095.946Anas_platyrhynchos
ENSKMAG00000021861lsm56294.643ENSACAG00000009530LSM59394.643Anolis_carolinensis
ENSKMAG00000021861lsm510073.626ENSANAG00000037758-10073.626Aotus_nancymaae
ENSKMAG00000021861lsm510093.407ENSANAG00000034409-10093.407Aotus_nancymaae
ENSKMAG00000021861lsm59990.000ENSANAG00000024192-9490.000Aotus_nancymaae
ENSKMAG00000021861lsm59696.552ENSACLG00000012891lsm59996.552Astatotilapia_calliptera
ENSKMAG00000021861lsm510081.915ENSAMXG00000035543lsm510081.915Astyanax_mexicanus
ENSKMAG00000021861lsm510094.505ENSBTAG00000002332LSM510094.505Bos_taurus
ENSKMAG00000021861lsm55279.167ENSBTAG00000052014-6379.167Bos_taurus
ENSKMAG00000021861lsm510072.527WBGene00003079lsm-510072.527Caenorhabditis_elegans
ENSKMAG00000021861lsm59982.222ENSCJAG00000005678-10082.222Callithrix_jacchus
ENSKMAG00000021861lsm510094.505ENSCJAG00000047379LSM59481.667Callithrix_jacchus
ENSKMAG00000021861lsm510093.407ENSCAFG00000019261-10093.407Canis_familiaris
ENSKMAG00000021861lsm55494.000ENSCAFG00000030781-5894.000Canis_familiaris
ENSKMAG00000021861lsm510094.505ENSCAFG00020004946LSM510094.505Canis_lupus_dingo
ENSKMAG00000021861lsm510094.505ENSCHIG00000024539LSM510094.505Capra_hircus
ENSKMAG00000021861lsm58174.324ENSCHIG00000021428-9571.591Capra_hircus
ENSKMAG00000021861lsm510092.308ENSCHIG00000004079-10092.308Capra_hircus
ENSKMAG00000021861lsm510070.330ENSTSYG00000036637-10070.330Carlito_syrichta
ENSKMAG00000021861lsm510076.923ENSTSYG00000026530-9176.923Carlito_syrichta
ENSKMAG00000021861lsm510082.418ENSTSYG00000028728-10082.418Carlito_syrichta
ENSKMAG00000021861lsm510094.505ENSTSYG00000006449-10094.505Carlito_syrichta
ENSKMAG00000021861lsm58289.333ENSCAPG00000006980LSM510089.333Cavia_aperea
ENSKMAG00000021861lsm510094.505ENSCPOG00000036386LSM510094.505Cavia_porcellus
ENSKMAG00000021861lsm510093.407ENSCCAG00000000821-10093.407Cebus_capucinus
ENSKMAG00000021861lsm510094.505ENSCCAG00000037808-10094.505Cebus_capucinus
ENSKMAG00000021861lsm510063.736ENSCCAG00000037334-10063.736Cebus_capucinus
ENSKMAG00000021861lsm510075.824ENSCCAG00000032792-10075.824Cebus_capucinus
ENSKMAG00000021861lsm510092.308ENSCCAG00000032123-10092.308Cebus_capucinus
ENSKMAG00000021861lsm59984.444ENSCATG00000014790-9592.727Cercocebus_atys
ENSKMAG00000021861lsm510094.505ENSCATG00000040218LSM510095.161Cercocebus_atys
ENSKMAG00000021861lsm510094.505ENSCLAG00000000202LSM510094.505Chinchilla_lanigera
ENSKMAG00000021861lsm510081.319ENSCLAG00000005062-9081.319Chinchilla_lanigera
ENSKMAG00000021861lsm58294.667ENSCHOG00000005335LSM59994.667Choloepus_hoffmanni
ENSKMAG00000021861lsm510094.505ENSCPBG00000013685LSM510094.505Chrysemys_picta_bellii
ENSKMAG00000021861lsm59784.091ENSCING00000020625-9984.091Ciona_intestinalis
ENSKMAG00000021861lsm59586.047ENSCSAVG00000001439-9886.047Ciona_savignyi
ENSKMAG00000021861lsm510094.505ENSCANG00000039909LSM510095.161Colobus_angolensis_palliatus
ENSKMAG00000021861lsm510094.505ENSCGRG00001015461Lsm510094.505Cricetulus_griseus_chok1gshd
ENSKMAG00000021861lsm58296.000ENSCGRG00000007677Lsm510096.000Cricetulus_griseus_crigri
ENSKMAG00000021861lsm510061.538ENSCSEG00000015286lsm510061.538Cynoglossus_semilaevis
ENSKMAG00000021861lsm510096.703ENSCVAG00000004262lsm510096.703Cyprinodon_variegatus
ENSKMAG00000021861lsm510094.505ENSDARG00000071573lsm510096.774Danio_rerio
ENSKMAG00000021861lsm510094.505ENSDNOG00000034958LSM510094.505Dasypus_novemcinctus
ENSKMAG00000021861lsm59683.908ENSDNOG00000049495-9683.908Dasypus_novemcinctus
ENSKMAG00000021861lsm510094.505ENSDORG00000009422Lsm510094.505Dipodomys_ordii
ENSKMAG00000021861lsm59580.233FBgn0035675CG66109580.233Drosophila_melanogaster
ENSKMAG00000021861lsm510094.505ENSETEG00000018068LSM510094.505Echinops_telfairi
ENSKMAG00000021861lsm59862.921ENSETEG00000000777-9962.921Echinops_telfairi
ENSKMAG00000021861lsm59971.111ENSETEG00000001469-9971.111Echinops_telfairi
ENSKMAG00000021861lsm59874.157ENSETEG00000010651-9974.157Echinops_telfairi
ENSKMAG00000021861lsm58177.027ENSETEG00000016074-9877.027Echinops_telfairi
ENSKMAG00000021861lsm510093.407ENSEBUG00000008540lsm510093.407Eptatretus_burgeri
ENSKMAG00000021861lsm510094.505ENSEASG00005003500LSM510094.505Equus_asinus_asinus
ENSKMAG00000021861lsm510081.720ENSECAG00000018445LSM510081.720Equus_caballus
ENSKMAG00000021861lsm56391.228ENSEEUG00000004102LSM59591.228Erinaceus_europaeus
ENSKMAG00000021861lsm510095.604ENSELUG00000007792lsm510095.604Esox_lucius
ENSKMAG00000021861lsm510094.505ENSFCAG00000000230LSM510094.505Felis_catus
ENSKMAG00000021861lsm58496.053ENSFALG00000001892LSM59296.053Ficedula_albicollis
ENSKMAG00000021861lsm510094.505ENSFDAG00000008767LSM510094.505Fukomys_damarensis
ENSKMAG00000021861lsm59065.854ENSFDAG00000008685-9765.854Fukomys_damarensis
ENSKMAG00000021861lsm59878.022ENSFHEG00000004011lsm59678.022Fundulus_heteroclitus
ENSKMAG00000021861lsm59996.667ENSGMOG00000018235lsm510096.667Gadus_morhua
ENSKMAG00000021861lsm510093.407ENSGALG00000041625LSM510093.407Gallus_gallus
ENSKMAG00000021861lsm56898.387ENSGAFG00000016824lsm510098.387Gambusia_affinis
ENSKMAG00000021861lsm510097.802ENSGACG00000005528lsm510097.802Gasterosteus_aculeatus
ENSKMAG00000021861lsm510094.505ENSGAGG00000015593LSM510094.505Gopherus_agassizii
ENSKMAG00000021861lsm510094.505ENSGGOG00000043469LSM510094.505Gorilla_gorilla
ENSKMAG00000021861lsm59696.552ENSHBUG00000013773lsm59996.552Haplochromis_burtoni
ENSKMAG00000021861lsm510094.505ENSHGLG00000011765LSM510094.505Heterocephalus_glaber_female
ENSKMAG00000021861lsm510091.209ENSHGLG00100015610LSM510091.209Heterocephalus_glaber_male
ENSKMAG00000021861lsm510061.538ENSHCOG00000008288lsm510061.538Hippocampus_comes
ENSKMAG00000021861lsm510094.505ENSIPUG00000021095LSM510094.505Ictalurus_punctatus
ENSKMAG00000021861lsm510094.505ENSSTOG00000012662LSM510094.505Ictidomys_tridecemlineatus
ENSKMAG00000021861lsm59279.070ENSSTOG00000033886-9779.070Ictidomys_tridecemlineatus
ENSKMAG00000021861lsm510092.308ENSJJAG00000012145-10092.308Jaculus_jaculus
ENSKMAG00000021861lsm58787.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSKMAG00000021861lsm510065.934ENSJJAG00000016144-9265.934Jaculus_jaculus
ENSKMAG00000021861lsm510087.912ENSLBEG00000009235LSM57087.912Labrus_bergylta
ENSKMAG00000021861lsm56283.929ENSLBEG00000017379lsm510083.607Labrus_bergylta
ENSKMAG00000021861lsm510093.407ENSLACG00000022448LSM510093.407Latimeria_chalumnae
ENSKMAG00000021861lsm510094.505ENSLOCG00000012903lsm510094.505Lepisosteus_oculatus
ENSKMAG00000021861lsm510068.132ENSLAFG00000027938-10068.132Loxodonta_africana
ENSKMAG00000021861lsm510094.505ENSLAFG00000029579LSM510094.505Loxodonta_africana
ENSKMAG00000021861lsm510094.505ENSMFAG00000038508LSM510094.505Macaca_fascicularis
ENSKMAG00000021861lsm510092.308ENSMFAG00000030152-10092.308Macaca_fascicularis
ENSKMAG00000021861lsm55391.667ENSMFAG00000031187-8191.667Macaca_fascicularis
ENSKMAG00000021861lsm59985.556ENSMMUG00000039822-10085.556Macaca_mulatta
ENSKMAG00000021861lsm510092.308ENSMMUG00000030131-10092.308Macaca_mulatta
ENSKMAG00000021861lsm55592.157ENSMMUG00000045129-8092.157Macaca_mulatta
ENSKMAG00000021861lsm510092.308ENSMNEG00000037935-10092.308Macaca_nemestrina
ENSKMAG00000021861lsm510094.505ENSMNEG00000015331LSM510095.161Macaca_nemestrina
ENSKMAG00000021861lsm510094.505ENSMLEG00000024945LSM510094.505Mandrillus_leucophaeus
ENSKMAG00000021861lsm59884.270ENSMLEG00000034037-10084.270Mandrillus_leucophaeus
ENSKMAG00000021861lsm510094.505ENSMAMG00000012869lsm510094.505Mastacembelus_armatus
ENSKMAG00000021861lsm59696.552ENSMZEG00005019554lsm59996.552Maylandia_zebra
ENSKMAG00000021861lsm510093.407ENSMGAG00000012117LSM510093.407Meleagris_gallopavo
ENSKMAG00000021861lsm510093.407ENSMAUG00000008132-10093.407Mesocricetus_auratus
ENSKMAG00000021861lsm510094.505ENSMAUG00000012222Lsm510094.505Mesocricetus_auratus
ENSKMAG00000021861lsm510094.505ENSMICG00000005353LSM510094.505Microcebus_murinus
ENSKMAG00000021861lsm59973.333ENSMICG00000033928-9673.333Microcebus_murinus
ENSKMAG00000021861lsm510094.505ENSMOCG00000012018Lsm510094.505Microtus_ochrogaster
ENSKMAG00000021861lsm58498.684ENSMMOG00000004026lsm58798.684Mola_mola
ENSKMAG00000021861lsm56895.161ENSMODG00000013274-10095.161Monodelphis_domestica
ENSKMAG00000021861lsm56891.935ENSMALG00000010343lsm510091.935Monopterus_albus
ENSKMAG00000021861lsm510094.505MGP_CAROLIEiJ_G0028421Lsm59897.561Mus_caroli
ENSKMAG00000021861lsm510094.505ENSMUSG00000091625Lsm59897.561Mus_musculus
ENSKMAG00000021861lsm510094.505MGP_PahariEiJ_G0022171Lsm59897.561Mus_pahari
ENSKMAG00000021861lsm510094.505MGP_SPRETEiJ_G0029423Lsm59897.561Mus_spretus
ENSKMAG00000021861lsm510094.505ENSMLUG00000017028LSM510094.505Myotis_lucifugus
ENSKMAG00000021861lsm510082.796ENSNGAG00000017707-10082.796Nannospalax_galili
ENSKMAG00000021861lsm59974.444ENSNGAG00000022569-9674.444Nannospalax_galili
ENSKMAG00000021861lsm510094.505ENSNGAG00000024142Lsm510094.505Nannospalax_galili
ENSKMAG00000021861lsm56396.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSKMAG00000021861lsm510094.505ENSNLEG00000015268LSM510094.505Nomascus_leucogenys
ENSKMAG00000021861lsm58296.000ENSOPRG00000002443LSM510096.000Ochotona_princeps
ENSKMAG00000021861lsm510094.505ENSODEG00000008258-10094.505Octodon_degus
ENSKMAG00000021861lsm510094.505ENSODEG00000019072-10094.505Octodon_degus
ENSKMAG00000021861lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSKMAG00000021861lsm510094.505ENSOCUG00000029043LSM510094.505Oryctolagus_cuniculus
ENSKMAG00000021861lsm510096.703ENSORLG00000027725lsm55896.703Oryzias_latipes
ENSKMAG00000021861lsm59693.103ENSORLG00020003019lsm58693.103Oryzias_latipes_hni
ENSKMAG00000021861lsm510096.703ENSORLG00015003338lsm510096.703Oryzias_latipes_hsok
ENSKMAG00000021861lsm510095.604ENSOMEG00000001078lsm510095.604Oryzias_melastigma
ENSKMAG00000021861lsm510094.505ENSOGAG00000013892LSM510094.505Otolemur_garnettii
ENSKMAG00000021861lsm510094.505ENSOARG00000006944LSM510094.505Ovis_aries
ENSKMAG00000021861lsm510094.505ENSPPAG00000003697-10094.505Pan_paniscus
ENSKMAG00000021861lsm510094.505ENSPPRG00000002550LSM510094.505Panthera_pardus
ENSKMAG00000021861lsm510094.505ENSPTIG00000015604LSM510094.505Panthera_tigris_altaica
ENSKMAG00000021861lsm510082.796ENSPTRG00000049488-10082.796Pan_troglodytes
ENSKMAG00000021861lsm510094.505ENSPTRG00000019057LSM510094.505Pan_troglodytes
ENSKMAG00000021861lsm59985.556ENSPANG00000032538-10085.556Papio_anubis
ENSKMAG00000021861lsm510091.209ENSPANG00000033477-10091.209Papio_anubis
ENSKMAG00000021861lsm510094.505ENSPANG00000032179-10094.505Papio_anubis
ENSKMAG00000021861lsm510096.703ENSPKIG00000011910lsm510096.703Paramormyrops_kingsleyae
ENSKMAG00000021861lsm58195.946ENSPSIG00000014796LSM510095.946Pelodiscus_sinensis
ENSKMAG00000021861lsm56898.387ENSPMGG00000011699lsm510098.387Periophthalmus_magnuspinnatus
ENSKMAG00000021861lsm510067.033ENSPEMG00000022375-10067.033Peromyscus_maniculatus_bairdii
ENSKMAG00000021861lsm55293.617ENSPEMG00000019994-8093.617Peromyscus_maniculatus_bairdii
ENSKMAG00000021861lsm510096.703ENSPFOG00000001433lsm510096.703Poecilia_formosa
ENSKMAG00000021861lsm510096.703ENSPLAG00000009665lsm510096.703Poecilia_latipinna
ENSKMAG00000021861lsm510096.703ENSPMEG00000022265lsm510096.703Poecilia_mexicana
ENSKMAG00000021861lsm56898.387ENSPREG00000022452lsm510098.387Poecilia_reticulata
ENSKMAG00000021861lsm510091.209ENSPPYG00000017661LSM510091.209Pongo_abelii
ENSKMAG00000021861lsm58995.062ENSPCAG00000013740LSM510095.062Procavia_capensis
ENSKMAG00000021861lsm510094.505ENSPVAG00000009786LSM510094.505Pteropus_vampyrus
ENSKMAG00000021861lsm59696.552ENSPNYG00000022236lsm59996.552Pundamilia_nyererei
ENSKMAG00000021861lsm510094.505ENSPNAG00000001887lsm510094.505Pygocentrus_nattereri
ENSKMAG00000021861lsm510091.304ENSRNOG00000027305AABR07065089.110091.304Rattus_norvegicus
ENSKMAG00000021861lsm510094.505ENSRNOG00000042126Lsm510094.505Rattus_norvegicus
ENSKMAG00000021861lsm510094.505ENSRBIG00000030340-10094.505Rhinopithecus_bieti
ENSKMAG00000021861lsm510094.505ENSRBIG00000030714-10094.505Rhinopithecus_bieti
ENSKMAG00000021861lsm510093.407ENSRBIG00000024431-10093.407Rhinopithecus_bieti
ENSKMAG00000021861lsm510094.505ENSRBIG00000027803-10095.161Rhinopithecus_bieti
ENSKMAG00000021861lsm510094.505ENSRROG00000023884-10094.505Rhinopithecus_roxellana
ENSKMAG00000021861lsm510094.505ENSRROG00000004655-10094.505Rhinopithecus_roxellana
ENSKMAG00000021861lsm510094.505ENSRROG00000042782-10095.161Rhinopithecus_roxellana
ENSKMAG00000021861lsm58547.561YER146W-8847.561Saccharomyces_cerevisiae
ENSKMAG00000021861lsm510092.308ENSSBOG00000019124-10092.308Saimiri_boliviensis_boliviensis
ENSKMAG00000021861lsm510072.527ENSSBOG00000034794-10072.527Saimiri_boliviensis_boliviensis
ENSKMAG00000021861lsm510094.505ENSSBOG00000012312LSM510094.505Saimiri_boliviensis_boliviensis
ENSKMAG00000021861lsm510096.703ENSSFOG00015010099lsm510096.703Scleropages_formosus
ENSKMAG00000021861lsm510061.538ENSSMAG00000007895lsm510061.538Scophthalmus_maximus
ENSKMAG00000021861lsm56898.387ENSSDUG00000010762lsm510098.387Seriola_dumerili
ENSKMAG00000021861lsm510097.802ENSSLDG00000025242lsm510097.802Seriola_lalandi_dorsalis
ENSKMAG00000021861lsm58675.641ENSSLDG00000008014-9375.641Seriola_lalandi_dorsalis
ENSKMAG00000021861lsm510067.033ENSSARG00000003330LSM510067.033Sorex_araneus
ENSKMAG00000021861lsm510092.308ENSSPUG00000002690LSM510093.548Sphenodon_punctatus
ENSKMAG00000021861lsm510062.637ENSSPAG00000005435lsm510062.637Stegastes_partitus
ENSKMAG00000021861lsm510094.505ENSSSCG00000026064-10094.505Sus_scrofa
ENSKMAG00000021861lsm57682.609ENSSSCG00000029661-9682.609Sus_scrofa
ENSKMAG00000021861lsm510092.308ENSTGUG00000017539LSM510092.308Taeniopygia_guttata
ENSKMAG00000021861lsm59087.356ENSTRUG00000017749lsm56587.356Takifugu_rubripes
ENSKMAG00000021861lsm510095.604ENSTNIG00000008695lsm510095.604Tetraodon_nigroviridis
ENSKMAG00000021861lsm510094.505ENSTBEG00000004876LSM510094.505Tupaia_belangeri
ENSKMAG00000021861lsm510094.505ENSTTRG00000004237LSM510094.505Tursiops_truncatus
ENSKMAG00000021861lsm55494.000ENSUAMG00000009786LSM56594.000Ursus_americanus
ENSKMAG00000021861lsm510093.407ENSUMAG00000002625LSM56593.407Ursus_maritimus
ENSKMAG00000021861lsm510094.505ENSVPAG00000009985LSM510094.505Vicugna_pacos
ENSKMAG00000021861lsm510094.505ENSVVUG00000021311LSM510094.505Vulpes_vulpes
ENSKMAG00000021861lsm59093.902ENSXETG00000026465lsm510093.902Xenopus_tropicalis
ENSKMAG00000021861lsm56898.387ENSXCOG00000015348lsm510098.387Xiphophorus_couchianus
ENSKMAG00000021861lsm510096.703ENSXMAG00000029988lsm510096.703Xiphophorus_maculatus

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