EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000000105 (Gene tree)
Gene ID: 102351308
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 16469 bases
Position: chrJH132619.1:270-16738
Accession: 102351308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000000118	HVSL	PF09749.9	3.7e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000000119	USB1-201	1055	XM_006014051	ENSLACP00000000118	289 (aa)	XP_006014113	H2ZRU7

Gene Model

Click here to download ENSLACG00000000105's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000000105's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000000105	USB1	72	59.330	ENSG00000103005	USB1	86	59.893	Homo_sapiens
ENSLACG00000000105	USB1	83	51.883	ENSAPOG00000011942	usb1	76	52.558	Acanthochromis_polyacanthus
ENSLACG00000000105	USB1	72	61.722	ENSAMEG00000017205	USB1	94	51.880	Ailuropoda_melanoleuca
ENSLACG00000000105	USB1	78	54.222	ENSACIG00000012234	usb1	82	53.333	Amphilophus_citrinellus
ENSLACG00000000105	USB1	86	50.400	ENSAOCG00000014831	usb1	77	51.131	Amphiprion_ocellaris
ENSLACG00000000105	USB1	86	50.800	ENSAPEG00000000296	usb1	77	51.584	Amphiprion_percula
ENSLACG00000000105	USB1	67	57.949	ENSATEG00000009348	usb1	86	48.980	Anabas_testudineus
ENSLACG00000000105	USB1	72	68.900	ENSAPLG00000002756	USB1	92	69.524	Anas_platyrhynchos
ENSLACG00000000105	USB1	66	64.249	ENSACAG00000015481	USB1	84	64.249	Anolis_carolinensis
ENSLACG00000000105	USB1	72	59.809	ENSANAG00000035640	USB1	85	55.459	Aotus_nancymaae
ENSLACG00000000105	USB1	66	57.812	ENSACLG00000020586	usb1	84	49.580	Astatotilapia_calliptera
ENSLACG00000000105	USB1	86	49.425	ENSAMXG00000040146	usb1	71	52.679	Astyanax_mexicanus
ENSLACG00000000105	USB1	92	52.075	ENSBTAG00000015758	USB1	88	53.086	Bos_taurus
ENSLACG00000000105	USB1	76	56.332	ENSCJAG00000011733	USB1	85	55.895	Callithrix_jacchus
ENSLACG00000000105	USB1	78	57.965	ENSCAFG00000008556	USB1	59	57.965	Canis_familiaris
ENSLACG00000000105	USB1	72	61.244	ENSCAFG00020009263	USB1	77	61.244	Canis_lupus_dingo
ENSLACG00000000105	USB1	92	52.075	ENSCHIG00000024290	USB1	94	50.385	Capra_hircus
ENSLACG00000000105	USB1	72	59.330	ENSTSYG00000006997	USB1	88	53.086	Carlito_syrichta
ENSLACG00000000105	USB1	73	48.341	ENSCAPG00000009057	USB1	96	45.852	Cavia_aperea
ENSLACG00000000105	USB1	92	52.985	ENSCPOG00000014325	USB1	83	57.205	Cavia_porcellus
ENSLACG00000000105	USB1	72	59.330	ENSCCAG00000022132	USB1	78	58.852	Cebus_capucinus
ENSLACG00000000105	USB1	73	60.000	ENSCATG00000032174	USB1	94	51.923	Cercocebus_atys
ENSLACG00000000105	USB1	54	59.236	ENSCLAG00000007363	USB1	97	55.172	Chinchilla_lanigera
ENSLACG00000000105	USB1	76	57.205	ENSCSAG00000004783	USB1	91	54.286	Chlorocebus_sabaeus
ENSLACG00000000105	USB1	66	69.271	ENSCPBG00000026943	USB1	69	69.271	Chrysemys_picta_bellii
ENSLACG00000000105	USB1	66	34.158	ENSCING00000011490	-	74	33.663	Ciona_intestinalis
ENSLACG00000000105	USB1	65	32.124	ENSCSAVG00000000894	-	69	32.124	Ciona_savignyi
ENSLACG00000000105	USB1	76	57.018	ENSCANG00000037135	USB1	85	56.579	Colobus_angolensis_palliatus
ENSLACG00000000105	USB1	91	53.788	ENSCGRG00001011243	USB1	76	60.577	Cricetulus_griseus_chok1gshd
ENSLACG00000000105	USB1	91	53.788	ENSCGRG00000013252	USB1	76	60.577	Cricetulus_griseus_crigri
ENSLACG00000000105	USB1	86	48.996	ENSCSEG00000013881	usb1	69	55.208	Cynoglossus_semilaevis
ENSLACG00000000105	USB1	72	54.286	ENSCVAG00000009252	usb1	89	54.286	Cyprinodon_variegatus
ENSLACG00000000105	USB1	66	55.497	ENSDARG00000003841	usb1	69	55.497	Danio_rerio
ENSLACG00000000105	USB1	91	52.963	ENSDORG00000001888	Usb1	87	53.846	Dipodomys_ordii
ENSLACG00000000105	USB1	61	40.331	FBgn0037713	CG16790	66	40.909	Drosophila_melanogaster
ENSLACG00000000105	USB1	76	52.968	ENSETEG00000019682	USB1	72	53.731	Echinops_telfairi
ENSLACG00000000105	USB1	83	45.228	ENSEBUG00000005889	usb1	78	45.374	Eptatretus_burgeri
ENSLACG00000000105	USB1	91	55.849	ENSEASG00005005484	USB1	77	62.500	Equus_asinus_asinus
ENSLACG00000000105	USB1	91	55.849	ENSECAG00000019493	USB1	71	62.500	Equus_caballus
ENSLACG00000000105	USB1	54	52.564	ENSEEUG00000000154	USB1	58	52.564	Erinaceus_europaeus
ENSLACG00000000105	USB1	69	55.276	ENSELUG00000010974	usb1	87	49.378	Esox_lucius
ENSLACG00000000105	USB1	72	60.287	ENSFCAG00000002693	USB1	77	59.809	Felis_catus
ENSLACG00000000105	USB1	81	57.203	ENSFALG00000006876	USB1	96	51.880	Ficedula_albicollis
ENSLACG00000000105	USB1	92	53.208	ENSFDAG00000010052	USB1	84	55.895	Fukomys_damarensis
ENSLACG00000000105	USB1	86	50.000	ENSFHEG00000012334	usb1	76	56.545	Fundulus_heteroclitus
ENSLACG00000000105	USB1	66	57.368	ENSGMOG00000004228	usb1	84	56.842	Gadus_morhua
ENSLACG00000000105	USB1	66	69.271	ENSGALG00000035604	USB1	79	66.337	Gallus_gallus
ENSLACG00000000105	USB1	86	52.140	ENSGAFG00000021890	usb1	78	52.586	Gambusia_affinis
ENSLACG00000000105	USB1	80	47.826	ENSGACG00000003257	usb1	82	47.391	Gasterosteus_aculeatus
ENSLACG00000000105	USB1	87	60.079	ENSGAGG00000022572	USB1	83	61.304	Gopherus_agassizii
ENSLACG00000000105	USB1	72	59.906	ENSGGOG00000017147	USB1	78	59.330	Gorilla_gorilla
ENSLACG00000000105	USB1	68	55.612	ENSHBUG00000009823	usb1	84	48.739	Haplochromis_burtoni
ENSLACG00000000105	USB1	98	51.064	ENSHGLG00000016078	USB1	82	56.140	Heterocephalus_glaber_female
ENSLACG00000000105	USB1	98	51.064	ENSHGLG00100005562	USB1	82	56.140	Heterocephalus_glaber_male
ENSLACG00000000105	USB1	64	56.989	ENSHCOG00000015633	usb1	74	56.771	Hippocampus_comes
ENSLACG00000000105	USB1	86	50.190	ENSIPUG00000008601	usb1	66	59.694	Ictalurus_punctatus
ENSLACG00000000105	USB1	81	58.120	ENSSTOG00000007548	USB1	95	52.632	Ictidomys_tridecemlineatus
ENSLACG00000000105	USB1	92	56.604	ENSJJAG00000021859	Usb1	94	54.545	Jaculus_jaculus
ENSLACG00000000105	USB1	78	52.679	ENSKMAG00000007200	usb1	86	48.988	Kryptolebias_marmoratus
ENSLACG00000000105	USB1	75	50.000	ENSLBEG00000008452	usb1	73	49.083	Labrus_bergylta
ENSLACG00000000105	USB1	75	56.944	ENSLOCG00000000465	usb1	76	56.481	Lepisosteus_oculatus
ENSLACG00000000105	USB1	93	46.097	ENSLAFG00000002267	USB1	77	50.943	Loxodonta_africana
ENSLACG00000000105	USB1	73	60.000	ENSMFAG00000003926	USB1	83	56.637	Macaca_fascicularis
ENSLACG00000000105	USB1	73	60.000	ENSMMUG00000022669	USB1	83	56.637	Macaca_mulatta
ENSLACG00000000105	USB1	73	60.000	ENSMNEG00000042487	USB1	78	59.524	Macaca_nemestrina
ENSLACG00000000105	USB1	73	60.000	ENSMLEG00000028756	USB1	83	56.637	Mandrillus_leucophaeus
ENSLACG00000000105	USB1	86	50.602	ENSMAMG00000015092	usb1	68	57.592	Mastacembelus_armatus
ENSLACG00000000105	USB1	66	57.812	ENSMZEG00005010008	usb1	84	49.580	Maylandia_zebra
ENSLACG00000000105	USB1	91	53.962	ENSMAUG00000007832	Usb1	87	54.472	Mesocricetus_auratus
ENSLACG00000000105	USB1	72	60.766	ENSMICG00000004900	USB1	88	54.733	Microcebus_murinus
ENSLACG00000000105	USB1	91	52.652	ENSMOCG00000022647	Usb1	77	59.135	Microtus_ochrogaster
ENSLACG00000000105	USB1	71	57.561	ENSMMOG00000000490	usb1	79	56.585	Mola_mola
ENSLACG00000000105	USB1	64	63.978	ENSMODG00000014067	USB1	81	58.407	Monodelphis_domestica
ENSLACG00000000105	USB1	80	50.435	ENSMALG00000005930	usb1	80	49.565	Monopterus_albus
ENSLACG00000000105	USB1	92	54.307	MGP_CAROLIEiJ_G0031421	Usb1	90	62.745	Mus_caroli
ENSLACG00000000105	USB1	92	54.307	ENSMUSG00000031792	Usb1	90	62.745	Mus_musculus
ENSLACG00000000105	USB1	72	61.538	MGP_PahariEiJ_G0023019	Usb1	91	63.208	Mus_pahari
ENSLACG00000000105	USB1	92	53.933	MGP_SPRETEiJ_G0032540	Usb1	77	61.538	Mus_spretus
ENSLACG00000000105	USB1	72	63.507	ENSMPUG00000004684	USB1	91	53.383	Mustela_putorius_furo
ENSLACG00000000105	USB1	72	63.636	ENSMLUG00000007400	USB1	96	59.735	Myotis_lucifugus
ENSLACG00000000105	USB1	72	60.287	ENSNGAG00000009703	Usb1	77	60.287	Nannospalax_galili
ENSLACG00000000105	USB1	75	48.624	ENSNBRG00000008747	usb1	77	58.580	Neolamprologus_brichardi
ENSLACG00000000105	USB1	72	60.287	ENSNLEG00000003340	USB1	92	54.936	Nomascus_leucogenys
ENSLACG00000000105	USB1	92	54.717	ENSODEG00000016214	USB1	77	61.244	Octodon_degus
ENSLACG00000000105	USB1	86	51.004	ENSONIG00000011063	usb1	85	48.739	Oreochromis_niloticus
ENSLACG00000000105	USB1	66	65.625	ENSOANG00000012118	USB1	80	65.625	Ornithorhynchus_anatinus
ENSLACG00000000105	USB1	76	51.121	ENSORLG00000012479	usb1	80	50.224	Oryzias_latipes
ENSLACG00000000105	USB1	76	51.121	ENSORLG00020018671	usb1	80	50.224	Oryzias_latipes_hni
ENSLACG00000000105	USB1	76	50.673	ENSORLG00015009679	usb1	80	49.776	Oryzias_latipes_hsok
ENSLACG00000000105	USB1	83	50.628	ENSOMEG00000012930	usb1	74	51.675	Oryzias_melastigma
ENSLACG00000000105	USB1	78	53.540	ENSOGAG00000003273	USB1	82	53.097	Otolemur_garnettii
ENSLACG00000000105	USB1	72	59.330	ENSOARG00000001107	USB1	79	58.852	Ovis_aries
ENSLACG00000000105	USB1	72	59.330	ENSPPAG00000042137	USB1	85	55.022	Pan_paniscus
ENSLACG00000000105	USB1	72	59.809	ENSPPRG00000024797	USB1	91	51.807	Panthera_pardus
ENSLACG00000000105	USB1	72	60.287	ENSPTIG00000007506	USB1	88	53.689	Panthera_tigris_altaica
ENSLACG00000000105	USB1	67	59.487	ENSPTRG00000008172	USB1	86	60.428	Pan_troglodytes
ENSLACG00000000105	USB1	73	60.000	ENSPANG00000025138	USB1	83	56.637	Papio_anubis
ENSLACG00000000105	USB1	70	56.931	ENSPKIG00000015109	usb1	84	50.000	Paramormyrops_kingsleyae
ENSLACG00000000105	USB1	59	58.960	ENSPSIG00000004305	USB1	72	60.241	Pelodiscus_sinensis
ENSLACG00000000105	USB1	67	55.385	ENSPMGG00000017725	usb1	74	54.359	Periophthalmus_magnuspinnatus
ENSLACG00000000105	USB1	72	59.135	ENSPEMG00000016183	Usb1	75	59.135	Peromyscus_maniculatus_bairdii
ENSLACG00000000105	USB1	73	53.521	ENSPMAG00000000462	usb1	89	53.052	Petromyzon_marinus
ENSLACG00000000105	USB1	98	48.592	ENSPFOG00000011130	usb1	93	49.042	Poecilia_formosa
ENSLACG00000000105	USB1	98	48.239	ENSPLAG00000009820	usb1	93	48.659	Poecilia_latipinna
ENSLACG00000000105	USB1	98	48.601	ENSPMEG00000006402	usb1	80	53.982	Poecilia_mexicana
ENSLACG00000000105	USB1	86	51.394	ENSPREG00000001047	usb1	89	53.363	Poecilia_reticulata
ENSLACG00000000105	USB1	72	57.619	ENSPPYG00000007401	USB1	82	57.143	Pongo_abelii
ENSLACG00000000105	USB1	72	61.722	ENSPCOG00000022612	USB1	78	61.244	Propithecus_coquereli
ENSLACG00000000105	USB1	92	51.698	ENSPVAG00000004613	USB1	85	57.207	Pteropus_vampyrus
ENSLACG00000000105	USB1	86	50.400	ENSPNYG00000022262	usb1	84	48.739	Pundamilia_nyererei
ENSLACG00000000105	USB1	81	50.638	ENSPNAG00000011736	usb1	80	50.638	Pygocentrus_nattereri
ENSLACG00000000105	USB1	91	53.409	ENSRNOG00000013216	Usb1	77	61.058	Rattus_norvegicus
ENSLACG00000000105	USB1	82	49.796	ENSRBIG00000044466	USB1	93	57.843	Rhinopithecus_bieti
ENSLACG00000000105	USB1	76	57.205	ENSRROG00000029211	USB1	91	54.286	Rhinopithecus_roxellana
ENSLACG00000000105	USB1	72	60.287	ENSSBOG00000029362	USB1	85	56.579	Saimiri_boliviensis_boliviensis
ENSLACG00000000105	USB1	70	59.901	ENSSHAG00000006993	USB1	93	55.242	Sarcophilus_harrisii
ENSLACG00000000105	USB1	71	59.512	ENSSFOG00015023663	usb1	80	51.765	Scleropages_formosus
ENSLACG00000000105	USB1	72	52.252	ENSSMAG00000015834	usb1	74	51.802	Scophthalmus_maximus
ENSLACG00000000105	USB1	67	58.462	ENSSDUG00000002949	usb1	72	57.436	Seriola_dumerili
ENSLACG00000000105	USB1	66	59.686	ENSSLDG00000014174	usb1	68	58.639	Seriola_lalandi_dorsalis
ENSLACG00000000105	USB1	73	61.137	ENSSPUG00000006741	USB1	94	61.765	Sphenodon_punctatus
ENSLACG00000000105	USB1	86	50.198	ENSSPAG00000007484	usb1	68	56.122	Stegastes_partitus
ENSLACG00000000105	USB1	92	53.585	ENSSSCG00000002807	USB1	89	53.815	Sus_scrofa
ENSLACG00000000105	USB1	74	60.465	ENSTGUG00000004792	USB1	94	51.894	Taeniopygia_guttata
ENSLACG00000000105	USB1	86	52.419	ENSTRUG00000021069	usb1	84	52.814	Takifugu_rubripes
ENSLACG00000000105	USB1	87	46.429	ENSTNIG00000000626	usb1	71	51.795	Tetraodon_nigroviridis
ENSLACG00000000105	USB1	79	38.158	ENSTBEG00000001507	USB1	97	38.158	Tupaia_belangeri
ENSLACG00000000105	USB1	72	62.019	ENSUAMG00000016823	USB1	88	54.839	Ursus_americanus
ENSLACG00000000105	USB1	66	62.304	ENSUMAG00000021369	USB1	86	62.366	Ursus_maritimus
ENSLACG00000000105	USB1	72	61.244	ENSVVUG00000023700	USB1	80	61.244	Vulpes_vulpes
ENSLACG00000000105	USB1	64	59.140	ENSXETG00000013795	usb1	80	57.214	Xenopus_tropicalis
ENSLACG00000000105	USB1	78	53.540	ENSXMAG00000024687	usb1	63	59.162	Xiphophorus_maculatus