EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000000226 (Gene tree)
Gene ID: 102356968
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 55573 bases
Position: chrJH128835.1:810-56382
Accession: 102356968
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000000251	ResIII	PF04851.15	1.6e-26	1	2
ENSLACP00000000251	ResIII	PF04851.15	1.6e-26	2	2
ENSLACP00000000252	ResIII	PF04851.15	1.7e-26	1	2
ENSLACP00000000252	ResIII	PF04851.15	1.7e-26	2	2
ENSLACP00000000251	DEAD	PF00270.29	7.8e-53	1	2
ENSLACP00000000251	DEAD	PF00270.29	7.8e-53	2	2
ENSLACP00000000252	DEAD	PF00270.29	8.1e-53	1	2
ENSLACP00000000252	DEAD	PF00270.29	8.1e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000000253	SNRNP200-201	7826	XM_006010255	ENSLACP00000000251	1745 (aa)	XP_006010317	H2ZS80
ENSLACT00000000254	SNRNP200-202	5292	-	ENSLACP00000000252	1764 (aa)	-	H2ZS81

Gene Model

Click here to download ENSLACG00000000226's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000000226's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000000226	SNRNP200	87	46.799	ENSLACG00000015253	ascc3	88	46.799
ENSLACG00000000226	SNRNP200	78	31.186	ENSLACG00000010698	HFM1	69	31.558

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000000226	SNRNP200	99	94.722	ENSG00000144028	SNRNP200	99	93.867	Homo_sapiens
ENSLACG00000000226	SNRNP200	99	92.224	ENSAPOG00000010223	snrnp200	82	92.092	Acanthochromis_polyacanthus
ENSLACG00000000226	SNRNP200	99	94.779	ENSAMEG00000008996	SNRNP200	82	94.779	Ailuropoda_melanoleuca
ENSLACG00000000226	SNRNP200	99	92.328	ENSACIG00000001764	snrnp200	80	92.328	Amphilophus_citrinellus
ENSLACG00000000226	SNRNP200	99	92.262	ENSAOCG00000024593	snrnp200	82	92.262	Amphiprion_ocellaris
ENSLACG00000000226	SNRNP200	99	92.328	ENSAPEG00000012554	snrnp200	82	92.328	Amphiprion_percula
ENSLACG00000000226	SNRNP200	99	92.108	ENSATEG00000022522	snrnp200	82	91.977	Anabas_testudineus
ENSLACG00000000226	SNRNP200	99	94.263	ENSAPLG00000004313	SNRNP200	82	94.263	Anas_platyrhynchos
ENSLACG00000000226	SNRNP200	99	93.887	ENSACAG00000000434	SNRNP200	77	93.887	Anolis_carolinensis
ENSLACG00000000226	SNRNP200	99	94.394	ENSANAG00000036625	SNRNP200	84	94.394	Aotus_nancymaae
ENSLACG00000000226	SNRNP200	99	92.339	ENSACLG00000011188	snrnp200	82	92.206	Astatotilapia_calliptera
ENSLACG00000000226	SNRNP200	99	91.647	ENSAMXG00000005684	snrnp200	82	91.519	Astyanax_mexicanus
ENSLACG00000000226	SNRNP200	99	94.148	ENSBTAG00000000848	SNRNP200	82	94.148	Bos_taurus
ENSLACG00000000226	SNRNP200	99	94.664	ENSCJAG00000007514	SNRNP200	82	94.664	Callithrix_jacchus
ENSLACG00000000226	SNRNP200	99	94.164	ENSCAFG00020019979	SNRNP200	100	94.924	Canis_lupus_dingo
ENSLACG00000000226	SNRNP200	99	94.435	ENSCHIG00000020611	SNRNP200	82	94.435	Capra_hircus
ENSLACG00000000226	SNRNP200	99	94.779	ENSTSYG00000010467	SNRNP200	82	94.779	Carlito_syrichta
ENSLACG00000000226	SNRNP200	99	94.336	ENSCAPG00000017234	SNRNP200	82	94.336	Cavia_aperea
ENSLACG00000000226	SNRNP200	99	94.607	ENSCPOG00000006776	SNRNP200	82	94.607	Cavia_porcellus
ENSLACG00000000226	SNRNP200	99	94.664	ENSCCAG00000033962	SNRNP200	82	94.664	Cebus_capucinus
ENSLACG00000000226	SNRNP200	99	94.722	ENSCATG00000015790	SNRNP200	82	94.722	Cercocebus_atys
ENSLACG00000000226	SNRNP200	99	94.664	ENSCLAG00000004116	SNRNP200	82	94.664	Chinchilla_lanigera
ENSLACG00000000226	SNRNP200	99	94.664	ENSCSAG00000017369	SNRNP200	82	94.664	Chlorocebus_sabaeus
ENSLACG00000000226	SNRNP200	99	94.492	ENSCPBG00000022571	SNRNP200	99	86.115	Chrysemys_picta_bellii
ENSLACG00000000226	SNRNP200	99	78.926	ENSCING00000005082	-	82	77.955	Ciona_intestinalis
ENSLACG00000000226	SNRNP200	99	94.722	ENSCANG00000033932	SNRNP200	87	94.722	Colobus_angolensis_palliatus
ENSLACG00000000226	SNRNP200	99	94.664	ENSCGRG00001022610	Snrnp200	82	94.664	Cricetulus_griseus_chok1gshd
ENSLACG00000000226	SNRNP200	99	93.986	ENSCGRG00000016472	Snrnp200	82	93.986	Cricetulus_griseus_crigri
ENSLACG00000000226	SNRNP200	99	91.738	ENSCSEG00000016399	snrnp200	82	91.738	Cynoglossus_semilaevis
ENSLACG00000000226	SNRNP200	100	85.845	ENSCVAG00000017631	snrnp200	81	85.845	Cyprinodon_variegatus
ENSLACG00000000226	SNRNP200	100	91.461	ENSDARG00000077536	snrnp200	82	91.461	Danio_rerio
ENSLACG00000000226	SNRNP200	99	93.001	ENSDNOG00000011227	SNRNP200	82	92.567	Dasypus_novemcinctus
ENSLACG00000000226	SNRNP200	99	94.559	ENSDORG00000005861	Snrnp200	83	94.559	Dipodomys_ordii
ENSLACG00000000226	SNRNP200	99	77.675	FBgn0263599	l(3)72Ab	81	77.466	Drosophila_melanogaster
ENSLACG00000000226	SNRNP200	94	95.052	ENSETEG00000000162	SNRNP200	56	95.052	Echinops_telfairi
ENSLACG00000000226	SNRNP200	99	81.513	ENSEBUG00000016524	snrnp200	92	81.058	Eptatretus_burgeri
ENSLACG00000000226	SNRNP200	99	94.007	ENSEASG00005001884	SNRNP200	82	94.007	Equus_asinus_asinus
ENSLACG00000000226	SNRNP200	99	94.836	ENSECAG00000019675	SNRNP200	82	94.836	Equus_caballus
ENSLACG00000000226	SNRNP200	95	93.514	ENSEEUG00000012178	SNRNP200	83	93.058	Erinaceus_europaeus
ENSLACG00000000226	SNRNP200	99	92.684	ENSELUG00000018948	snrnp200	82	92.550	Esox_lucius
ENSLACG00000000226	SNRNP200	99	94.836	ENSFCAG00000010699	SNRNP200	82	94.836	Felis_catus
ENSLACG00000000226	SNRNP200	99	88.952	ENSFALG00000001368	-	83	88.952	Ficedula_albicollis
ENSLACG00000000226	SNRNP200	99	94.550	ENSFDAG00000004683	SNRNP200	82	94.550	Fukomys_damarensis
ENSLACG00000000226	SNRNP200	100	89.169	ENSFHEG00000003786	snrnp200	81	89.169	Fundulus_heteroclitus
ENSLACG00000000226	SNRNP200	100	90.961	ENSGMOG00000004881	snrnp200	82	90.961	Gadus_morhua
ENSLACG00000000226	SNRNP200	100	89.456	ENSGAFG00000010807	snrnp200	81	89.456	Gambusia_affinis
ENSLACG00000000226	SNRNP200	100	91.648	ENSGACG00000011474	snrnp200	81	91.648	Gasterosteus_aculeatus
ENSLACG00000000226	SNRNP200	99	95.213	ENSGAGG00000016069	SNRNP200	97	88.617	Gopherus_agassizii
ENSLACG00000000226	SNRNP200	99	94.722	ENSGGOG00000005174	SNRNP200	95	96.726	Gorilla_gorilla
ENSLACG00000000226	SNRNP200	99	89.288	ENSHBUG00000011322	snrnp200	81	89.288	Haplochromis_burtoni
ENSLACG00000000226	SNRNP200	99	94.550	ENSHGLG00000006654	SNRNP200	82	94.550	Heterocephalus_glaber_female
ENSLACG00000000226	SNRNP200	99	94.550	ENSHGLG00100018594	SNRNP200	82	94.550	Heterocephalus_glaber_male
ENSLACG00000000226	SNRNP200	99	94.722	ENSSTOG00000016351	SNRNP200	82	94.722	Ictidomys_tridecemlineatus
ENSLACG00000000226	SNRNP200	99	94.492	ENSJJAG00000023659	Snrnp200	82	94.492	Jaculus_jaculus
ENSLACG00000000226	SNRNP200	100	88.527	ENSKMAG00000003665	snrnp200	81	88.527	Kryptolebias_marmoratus
ENSLACG00000000226	SNRNP200	100	91.977	ENSLBEG00000021585	snrnp200	82	91.977	Labrus_bergylta
ENSLACG00000000226	SNRNP200	100	94.212	ENSLOCG00000015198	snrnp200	82	94.212	Lepisosteus_oculatus
ENSLACG00000000226	SNRNP200	99	94.836	ENSLAFG00000015626	SNRNP200	82	94.836	Loxodonta_africana
ENSLACG00000000226	SNRNP200	99	94.664	ENSMFAG00000040174	SNRNP200	99	96.221	Macaca_fascicularis
ENSLACG00000000226	SNRNP200	99	94.664	ENSMMUG00000023261	SNRNP200	82	94.664	Macaca_mulatta
ENSLACG00000000226	SNRNP200	99	94.664	ENSMNEG00000032398	SNRNP200	82	94.664	Macaca_nemestrina
ENSLACG00000000226	SNRNP200	99	94.722	ENSMLEG00000019083	SNRNP200	99	96.221	Mandrillus_leucophaeus
ENSLACG00000000226	SNRNP200	100	92.550	ENSMAMG00000007851	snrnp200	82	92.550	Mastacembelus_armatus
ENSLACG00000000226	SNRNP200	99	89.288	ENSMZEG00005010787	snrnp200	81	89.288	Maylandia_zebra
ENSLACG00000000226	SNRNP200	99	94.091	ENSMGAG00000001831	SNRNP200	85	93.654	Meleagris_gallopavo
ENSLACG00000000226	SNRNP200	99	94.722	ENSMAUG00000011825	Snrnp200	82	94.722	Mesocricetus_auratus
ENSLACG00000000226	SNRNP200	99	94.779	ENSMICG00000004710	SNRNP200	98	96.056	Microcebus_murinus
ENSLACG00000000226	SNRNP200	99	94.722	ENSMOCG00000011814	Snrnp200	84	94.282	Microtus_ochrogaster
ENSLACG00000000226	SNRNP200	99	90.150	ENSMMOG00000014167	snrnp200	82	89.697	Mola_mola
ENSLACG00000000226	SNRNP200	99	94.550	ENSMODG00000008475	SNRNP200	82	94.550	Monodelphis_domestica
ENSLACG00000000226	SNRNP200	99	92.339	ENSMALG00000001973	snrnp200	82	92.206	Monopterus_albus
ENSLACG00000000226	SNRNP200	99	94.664	MGP_CAROLIEiJ_G0024250	Snrnp200	82	94.664	Mus_caroli
ENSLACG00000000226	SNRNP200	99	94.722	ENSMUSG00000003660	Snrnp200	82	94.722	Mus_musculus
ENSLACG00000000226	SNRNP200	99	94.722	MGP_PahariEiJ_G0025695	Snrnp200	82	94.722	Mus_pahari
ENSLACG00000000226	SNRNP200	99	94.722	MGP_SPRETEiJ_G0025170	Snrnp200	82	94.722	Mus_spretus
ENSLACG00000000226	SNRNP200	99	94.836	ENSMPUG00000008949	SNRNP200	82	94.836	Mustela_putorius_furo
ENSLACG00000000226	SNRNP200	99	94.266	ENSMLUG00000010493	SNRNP200	82	94.266	Myotis_lucifugus
ENSLACG00000000226	SNRNP200	99	91.624	ENSMLUG00000027511	-	82	91.624	Myotis_lucifugus
ENSLACG00000000226	SNRNP200	99	94.722	ENSNGAG00000021993	Snrnp200	82	94.722	Nannospalax_galili
ENSLACG00000000226	SNRNP200	99	92.459	ENSNBRG00000017960	snrnp200	87	92.459	Neolamprologus_brichardi
ENSLACG00000000226	SNRNP200	99	89.420	ENSNLEG00000000025	SNRNP200	82	89.002	Nomascus_leucogenys
ENSLACG00000000226	SNRNP200	99	95.487	ENSMEUG00000010532	SNRNP200	60	95.487	Notamacropus_eugenii
ENSLACG00000000226	SNRNP200	99	93.230	ENSOPRG00000015464	SNRNP200	82	93.230	Ochotona_princeps
ENSLACG00000000226	SNRNP200	99	94.607	ENSODEG00000008366	SNRNP200	82	94.607	Octodon_degus
ENSLACG00000000226	SNRNP200	99	92.166	ENSONIG00000010714	snrnp200	82	92.034	Oreochromis_niloticus
ENSLACG00000000226	SNRNP200	99	94.664	ENSOCUG00000009864	SNRNP200	82	94.664	Oryctolagus_cuniculus
ENSLACG00000000226	SNRNP200	100	91.213	ENSORLG00000012286	snrnp200	85	91.681	Oryzias_latipes
ENSLACG00000000226	SNRNP200	100	91.213	ENSORLG00020004648	snrnp200	82	91.681	Oryzias_latipes_hni
ENSLACG00000000226	SNRNP200	100	91.213	ENSORLG00015019114	snrnp200	90	91.681	Oryzias_latipes_hsok
ENSLACG00000000226	SNRNP200	99	92.051	ENSOMEG00000011834	snrnp200	82	91.920	Oryzias_melastigma
ENSLACG00000000226	SNRNP200	99	94.779	ENSOGAG00000006879	SNRNP200	82	94.779	Otolemur_garnettii
ENSLACG00000000226	SNRNP200	99	93.234	ENSOARG00000013949	SNRNP200	82	92.800	Ovis_aries
ENSLACG00000000226	SNRNP200	99	94.722	ENSPPAG00000041559	SNRNP200	82	94.722	Pan_paniscus
ENSLACG00000000226	SNRNP200	99	94.836	ENSPPRG00000004435	SNRNP200	82	94.836	Panthera_pardus
ENSLACG00000000226	SNRNP200	99	94.320	ENSPTIG00000006380	SNRNP200	82	94.320	Panthera_tigris_altaica
ENSLACG00000000226	SNRNP200	99	94.722	ENSPTRG00000012230	SNRNP200	91	96.460	Pan_troglodytes
ENSLACG00000000226	SNRNP200	99	94.664	ENSPANG00000006017	SNRNP200	87	95.665	Papio_anubis
ENSLACG00000000226	SNRNP200	100	92.092	ENSPKIG00000014762	snrnp200	85	92.092	Paramormyrops_kingsleyae
ENSLACG00000000226	SNRNP200	99	93.287	ENSPSIG00000008580	SNRNP200	82	93.287	Pelodiscus_sinensis
ENSLACG00000000226	SNRNP200	99	94.722	ENSPCIG00000023050	SNRNP200	82	94.722	Phascolarctos_cinereus
ENSLACG00000000226	SNRNP200	100	92.268	ENSPFOG00000015110	snrnp200	82	92.268	Poecilia_formosa
ENSLACG00000000226	SNRNP200	99	92.152	ENSPLAG00000006711	snrnp200	80	92.152	Poecilia_latipinna
ENSLACG00000000226	SNRNP200	99	92.084	ENSPMEG00000021166	snrnp200	80	92.084	Poecilia_mexicana
ENSLACG00000000226	SNRNP200	100	92.436	ENSPREG00000008875	snrnp200	82	92.436	Poecilia_reticulata
ENSLACG00000000226	SNRNP200	99	94.722	ENSPPYG00000012068	SNRNP200	82	94.722	Pongo_abelii
ENSLACG00000000226	SNRNP200	97	97.436	ENSPCAG00000008536	SNRNP200	71	97.436	Procavia_capensis
ENSLACG00000000226	SNRNP200	99	94.779	ENSPCOG00000024608	SNRNP200	82	94.779	Propithecus_coquereli
ENSLACG00000000226	SNRNP200	99	93.552	ENSPVAG00000005860	SNRNP200	78	93.552	Pteropus_vampyrus
ENSLACG00000000226	SNRNP200	99	86.797	ENSPNYG00000017476	snrnp200	81	86.579	Pundamilia_nyererei
ENSLACG00000000226	SNRNP200	100	86.819	ENSPNAG00000010998	snrnp200	81	86.819	Pygocentrus_nattereri
ENSLACG00000000226	SNRNP200	99	94.722	ENSRNOG00000012157	Snrnp200	82	94.722	Rattus_norvegicus
ENSLACG00000000226	SNRNP200	99	94.722	ENSRBIG00000044690	-	90	96.774	Rhinopithecus_bieti
ENSLACG00000000226	SNRNP200	99	94.722	ENSRROG00000037952	-	82	94.722	Rhinopithecus_roxellana
ENSLACG00000000226	SNRNP200	99	94.664	ENSSBOG00000035471	SNRNP200	97	96.460	Saimiri_boliviensis_boliviensis
ENSLACG00000000226	SNRNP200	99	94.722	ENSSHAG00000000758	SNRNP200	85	94.282	Sarcophilus_harrisii
ENSLACG00000000226	SNRNP200	99	92.166	ENSSFOG00015018826	snrnp200	82	92.034	Scleropages_formosus
ENSLACG00000000226	SNRNP200	99	92.197	ENSSMAG00000005463	snrnp200	82	91.920	Scophthalmus_maximus
ENSLACG00000000226	SNRNP200	99	92.454	ENSSDUG00000021410	snrnp200	82	92.321	Seriola_dumerili
ENSLACG00000000226	SNRNP200	99	92.339	ENSSLDG00000010884	snrnp200	82	92.206	Seriola_lalandi_dorsalis
ENSLACG00000000226	SNRNP200	95	90.869	ENSSARG00000010728	SNRNP200	78	90.869	Sorex_araneus
ENSLACG00000000226	SNRNP200	99	94.664	ENSSPUG00000003726	-	82	94.664	Sphenodon_punctatus
ENSLACG00000000226	SNRNP200	99	92.459	ENSSPAG00000001842	snrnp200	82	92.149	Stegastes_partitus
ENSLACG00000000226	SNRNP200	99	95.350	ENSSSCG00000008127	SNRNP200	82	94.722	Sus_scrofa
ENSLACG00000000226	SNRNP200	99	85.532	ENSTGUG00000014475	-	77	85.532	Taeniopygia_guttata
ENSLACG00000000226	SNRNP200	99	92.051	ENSTRUG00000001307	snrnp200	82	91.920	Takifugu_rubripes
ENSLACG00000000226	SNRNP200	99	90.173	ENSTNIG00000004320	snrnp200	81	90.173	Tetraodon_nigroviridis
ENSLACG00000000226	SNRNP200	85	96.244	ENSTBEG00000003329	-	55	96.244	Tupaia_belangeri
ENSLACG00000000226	SNRNP200	99	94.664	ENSTTRG00000004983	SNRNP200	82	94.664	Tursiops_truncatus
ENSLACG00000000226	SNRNP200	69	92.175	ENSUAMG00000008395	-	60	92.175	Ursus_americanus
ENSLACG00000000226	SNRNP200	99	94.836	ENSUMAG00000012385	SNRNP200	82	94.836	Ursus_maritimus
ENSLACG00000000226	SNRNP200	99	95.607	ENSVVUG00000026247	SNRNP200	100	83.781	Vulpes_vulpes
ENSLACG00000000226	SNRNP200	100	92.982	ENSXETG00000001243	snrnp200	82	93.714	Xenopus_tropicalis
ENSLACG00000000226	SNRNP200	99	92.529	ENSXMAG00000002058	snrnp200	80	92.529	Xiphophorus_maculatus