EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000000233 (Gene tree)
Gene ID: 102350672
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 87083 bases
Position: chrJH129154.1:847-87929
Accession: 102350672
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000000259	CPSF_A	PF03178.15	5.9e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000000261	CPSF1-201	4164	XM_006011107	ENSLACP00000000259	1387 (aa)	-	H2ZS88

Gene Model

Click here to download ENSLACG00000000233's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000000233's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000000233	CPSF1	92	81.490	ENSG00000071894	CPSF1	100	82.407	Homo_sapiens
ENSLACG00000000233	CPSF1	92	79.187	ENSAPOG00000019621	cpsf1	87	79.306	Acanthochromis_polyacanthus
ENSLACG00000000233	CPSF1	97	66.879	ENSAMEG00000005557	CPSF1	87	79.207	Ailuropoda_melanoleuca
ENSLACG00000000233	CPSF1	92	77.485	ENSACIG00000006112	cpsf1	88	77.605	Amphilophus_citrinellus
ENSLACG00000000233	CPSF1	92	77.632	ENSAOCG00000007120	cpsf1	88	77.751	Amphiprion_ocellaris
ENSLACG00000000233	CPSF1	92	78.947	ENSAPEG00000005755	cpsf1	88	79.067	Amphiprion_percula
ENSLACG00000000233	CPSF1	92	79.545	ENSATEG00000011097	cpsf1	87	79.665	Anabas_testudineus
ENSLACG00000000233	CPSF1	84	75.890	ENSACAG00000009655	CPSF1	87	75.890	Anolis_carolinensis
ENSLACG00000000233	CPSF1	92	81.370	ENSANAG00000036514	CPSF1	88	81.370	Aotus_nancymaae
ENSLACG00000000233	CPSF1	91	78.806	ENSACLG00000012231	cpsf1	92	72.584	Astatotilapia_calliptera
ENSLACG00000000233	CPSF1	100	61.480	ENSAMXG00000008485	cpsf1	87	74.582	Astyanax_mexicanus
ENSLACG00000000233	CPSF1	100	67.657	ENSBTAG00000008355	CPSF1	88	78.880	Bos_taurus
ENSLACG00000000233	CPSF1	88	31.828	WBGene00022301	cpsf-1	99	40.741	Caenorhabditis_elegans
ENSLACG00000000233	CPSF1	92	81.130	ENSCJAG00000021421	CPSF1	88	81.130	Callithrix_jacchus
ENSLACG00000000233	CPSF1	97	68.839	ENSCAFG00000001600	CPSF1	87	81.731	Canis_familiaris
ENSLACG00000000233	CPSF1	100	69.410	ENSCAFG00020020821	CPSF1	88	81.731	Canis_lupus_dingo
ENSLACG00000000233	CPSF1	100	64.540	ENSCHIG00000015833	CPSF1	87	73.741	Capra_hircus
ENSLACG00000000233	CPSF1	100	69.088	ENSTSYG00000028560	CPSF1	100	82.870	Carlito_syrichta
ENSLACG00000000233	CPSF1	84	81.731	ENSCAPG00000014921	CPSF1	83	81.731	Cavia_aperea
ENSLACG00000000233	CPSF1	92	81.731	ENSCPOG00000011448	CPSF1	88	81.731	Cavia_porcellus
ENSLACG00000000233	CPSF1	92	81.250	ENSCCAG00000037658	CPSF1	100	81.651	Cebus_capucinus
ENSLACG00000000233	CPSF1	100	68.840	ENSCATG00000037234	CPSF1	100	82.407	Cercocebus_atys
ENSLACG00000000233	CPSF1	92	81.731	ENSCLAG00000012166	CPSF1	88	81.731	Chinchilla_lanigera
ENSLACG00000000233	CPSF1	92	81.250	ENSCSAG00000008502	CPSF1	88	81.250	Chlorocebus_sabaeus
ENSLACG00000000233	CPSF1	99	70.409	ENSCPBG00000018910	CPSF1	84	83.619	Chrysemys_picta_bellii
ENSLACG00000000233	CPSF1	86	45.843	ENSCING00000000514	-	87	45.414	Ciona_intestinalis
ENSLACG00000000233	CPSF1	90	46.413	ENSCSAVG00000002293	-	98	49.296	Ciona_savignyi
ENSLACG00000000233	CPSF1	91	77.404	ENSCANG00000032760	CPSF1	100	82.407	Colobus_angolensis_palliatus
ENSLACG00000000233	CPSF1	92	81.971	ENSCGRG00001016344	Cpsf1	88	81.971	Cricetulus_griseus_chok1gshd
ENSLACG00000000233	CPSF1	92	78.846	ENSCGRG00000003118	Cpsf1	87	78.846	Cricetulus_griseus_crigri
ENSLACG00000000233	CPSF1	92	77.938	ENSCSEG00000013464	cpsf1	88	78.058	Cynoglossus_semilaevis
ENSLACG00000000233	CPSF1	86	67.785	ENSCVAG00000014059	cpsf1	100	75.000	Cyprinodon_variegatus
ENSLACG00000000233	CPSF1	100	67.531	ENSDARG00000034178	cpsf1	92	75.168	Danio_rerio
ENSLACG00000000233	CPSF1	88	81.490	ENSDORG00000006278	Cpsf1	83	81.490	Dipodomys_ordii
ENSLACG00000000233	CPSF1	89	47.059	FBgn0024698	Cpsf160	86	45.890	Drosophila_melanogaster
ENSLACG00000000233	CPSF1	70	87.919	ENSETEG00000006022	CPSF1	70	87.919	Echinops_telfairi
ENSLACG00000000233	CPSF1	100	69.067	ENSEASG00005010774	CPSF1	88	81.851	Equus_asinus_asinus
ENSLACG00000000233	CPSF1	100	69.136	ENSECAG00000022209	CPSF1	88	81.851	Equus_caballus
ENSLACG00000000233	CPSF1	100	68.746	ENSEEUG00000000471	CPSF1	88	81.010	Erinaceus_europaeus
ENSLACG00000000233	CPSF1	92	77.396	ENSELUG00000012271	cpsf1	87	77.515	Esox_lucius
ENSLACG00000000233	CPSF1	100	68.107	ENSFDAG00000016060	CPSF1	88	81.731	Fukomys_damarensis
ENSLACG00000000233	CPSF1	100	65.984	ENSFHEG00000016801	cpsf1	91	72.870	Fundulus_heteroclitus
ENSLACG00000000233	CPSF1	92	77.273	ENSGMOG00000000796	cpsf1	87	77.273	Gadus_morhua
ENSLACG00000000233	CPSF1	95	83.929	ENSGAFG00000018890	cpsf1	88	83.929	Gambusia_affinis
ENSLACG00000000233	CPSF1	92	76.703	ENSGACG00000008703	cpsf1	88	76.822	Gasterosteus_aculeatus
ENSLACG00000000233	CPSF1	100	67.579	ENSGAGG00000004276	CPSF1	88	77.419	Gopherus_agassizii
ENSLACG00000000233	CPSF1	92	81.490	ENSGGOG00000016185	CPSF1	100	82.407	Gorilla_gorilla
ENSLACG00000000233	CPSF1	100	67.405	ENSHBUG00000018900	cpsf1	88	79.401	Haplochromis_burtoni
ENSLACG00000000233	CPSF1	92	81.731	ENSHGLG00000016139	CPSF1	88	81.731	Heterocephalus_glaber_female
ENSLACG00000000233	CPSF1	92	81.611	ENSHGLG00100009750	CPSF1	88	81.611	Heterocephalus_glaber_male
ENSLACG00000000233	CPSF1	92	77.605	ENSHCOG00000018509	cpsf1	87	77.605	Hippocampus_comes
ENSLACG00000000233	CPSF1	100	64.786	ENSIPUG00000011259	cpsf1	88	74.522	Ictalurus_punctatus
ENSLACG00000000233	CPSF1	88	81.851	ENSSTOG00000009957	CPSF1	84	81.851	Ictidomys_tridecemlineatus
ENSLACG00000000233	CPSF1	100	69.479	ENSJJAG00000023002	Cpsf1	88	81.971	Jaculus_jaculus
ENSLACG00000000233	CPSF1	81	88.088	ENSKMAG00000001940	cpsf1	89	88.088	Kryptolebias_marmoratus
ENSLACG00000000233	CPSF1	92	76.576	ENSLBEG00000003601	cpsf1	88	76.576	Labrus_bergylta
ENSLACG00000000233	CPSF1	92	82.220	ENSLOCG00000008484	cpsf1	88	82.578	Lepisosteus_oculatus
ENSLACG00000000233	CPSF1	88	81.490	ENSLAFG00000022601	CPSF1	87	81.490	Loxodonta_africana
ENSLACG00000000233	CPSF1	92	81.370	ENSMFAG00000037013	CPSF1	100	82.407	Macaca_fascicularis
ENSLACG00000000233	CPSF1	92	81.370	ENSMMUG00000007380	CPSF1	100	82.407	Macaca_mulatta
ENSLACG00000000233	CPSF1	87	81.370	ENSMNEG00000043564	CPSF1	100	82.407	Macaca_nemestrina
ENSLACG00000000233	CPSF1	92	81.370	ENSMLEG00000043010	CPSF1	100	82.407	Mandrillus_leucophaeus
ENSLACG00000000233	CPSF1	92	79.187	ENSMAMG00000003803	cpsf1	87	79.306	Mastacembelus_armatus
ENSLACG00000000233	CPSF1	100	65.608	ENSMZEG00005001168	cpsf1	92	72.584	Maylandia_zebra
ENSLACG00000000233	CPSF1	100	69.273	ENSMAUG00000003601	Cpsf1	88	81.971	Mesocricetus_auratus
ENSLACG00000000233	CPSF1	100	68.861	ENSMICG00000015767	CPSF1	88	81.490	Microcebus_murinus
ENSLACG00000000233	CPSF1	92	81.851	ENSMOCG00000022758	Cpsf1	89	81.851	Microtus_ochrogaster
ENSLACG00000000233	CPSF1	91	78.469	ENSMMOG00000021245	cpsf1	88	78.589	Mola_mola
ENSLACG00000000233	CPSF1	92	82.212	ENSMODG00000010755	CPSF1	88	82.212	Monodelphis_domestica
ENSLACG00000000233	CPSF1	92	79.067	ENSMALG00000020545	cpsf1	87	79.306	Monopterus_albus
ENSLACG00000000233	CPSF1	92	81.851	MGP_CAROLIEiJ_G0019936	Cpsf1	88	81.851	Mus_caroli
ENSLACG00000000233	CPSF1	92	81.611	ENSMUSG00000034022	Cpsf1	88	81.611	Mus_musculus
ENSLACG00000000233	CPSF1	92	81.971	MGP_PahariEiJ_G0019946	Cpsf1	88	81.971	Mus_pahari
ENSLACG00000000233	CPSF1	92	81.731	MGP_SPRETEiJ_G0020839	Cpsf1	88	81.731	Mus_spretus
ENSLACG00000000233	CPSF1	93	69.021	ENSMPUG00000006419	CPSF1	80	80.929	Mustela_putorius_furo
ENSLACG00000000233	CPSF1	91	81.611	ENSNGAG00000022460	Cpsf1	88	81.851	Nannospalax_galili
ENSLACG00000000233	CPSF1	100	66.574	ENSNBRG00000000813	cpsf1	89	76.499	Neolamprologus_brichardi
ENSLACG00000000233	CPSF1	76	74.870	ENSNLEG00000010633	-	100	82.407	Nomascus_leucogenys
ENSLACG00000000233	CPSF1	72	89.535	ENSMEUG00000014922	CPSF1	68	89.535	Notamacropus_eugenii
ENSLACG00000000233	CPSF1	50	87.302	ENSOPRG00000004693	-	56	87.302	Ochotona_princeps
ENSLACG00000000233	CPSF1	100	68.656	ENSODEG00000013995	CPSF1	88	81.851	Octodon_degus
ENSLACG00000000233	CPSF1	92	79.281	ENSONIG00000007676	cpsf1	88	79.401	Oreochromis_niloticus
ENSLACG00000000233	CPSF1	55	81.429	ENSOANG00000010716	CPSF1	68	81.429	Ornithorhynchus_anatinus
ENSLACG00000000233	CPSF1	92	78.469	ENSORLG00000013544	cpsf1	92	89.300	Oryzias_latipes
ENSLACG00000000233	CPSF1	92	78.469	ENSORLG00020021693	cpsf1	92	89.300	Oryzias_latipes_hni
ENSLACG00000000233	CPSF1	92	78.469	ENSORLG00015009979	cpsf1	87	78.589	Oryzias_latipes_hsok
ENSLACG00000000233	CPSF1	92	78.589	ENSOMEG00000011849	cpsf1	87	78.708	Oryzias_melastigma
ENSLACG00000000233	CPSF1	92	81.611	ENSOGAG00000000315	CPSF1	88	81.611	Otolemur_garnettii
ENSLACG00000000233	CPSF1	50	78.226	ENSOARG00000013594	-	89	78.226	Ovis_aries
ENSLACG00000000233	CPSF1	92	81.490	ENSPPAG00000019280	CPSF1	100	82.805	Pan_paniscus
ENSLACG00000000233	CPSF1	92	81.490	ENSPTRG00000049288	-	100	82.805	Pan_troglodytes
ENSLACG00000000233	CPSF1	92	79.113	ENSPTRG00000051253	-	100	82.805	Pan_troglodytes
ENSLACG00000000233	CPSF1	87	81.370	ENSPANG00000015005	CPSF1	100	82.407	Papio_anubis
ENSLACG00000000233	CPSF1	92	80.383	ENSPKIG00000002582	cpsf1	91	77.097	Paramormyrops_kingsleyae
ENSLACG00000000233	CPSF1	92	82.332	ENSPCIG00000009035	CPSF1	88	82.332	Phascolarctos_cinereus
ENSLACG00000000233	CPSF1	92	77.327	ENSPFOG00000012870	cpsf1	87	77.685	Poecilia_formosa
ENSLACG00000000233	CPSF1	92	77.924	ENSPREG00000016307	cpsf1	88	77.924	Poecilia_reticulata
ENSLACG00000000233	CPSF1	89	76.202	ENSPPYG00000018973	CPSF1	87	76.202	Pongo_abelii
ENSLACG00000000233	CPSF1	81	85.795	ENSPCAG00000011541	CPSF1	78	85.795	Procavia_capensis
ENSLACG00000000233	CPSF1	100	65.614	ENSPCOG00000020001	CPSF1	100	81.944	Propithecus_coquereli
ENSLACG00000000233	CPSF1	82	88.286	ENSPVAG00000006761	CPSF1	79	88.286	Pteropus_vampyrus
ENSLACG00000000233	CPSF1	92	79.281	ENSPNYG00000004906	cpsf1	89	79.401	Pundamilia_nyererei
ENSLACG00000000233	CPSF1	100	66.389	ENSPNAG00000024395	cpsf1	89	74.702	Pygocentrus_nattereri
ENSLACG00000000233	CPSF1	100	69.299	ENSRNOG00000030705	Cpsf1	88	81.971	Rattus_norvegicus
ENSLACG00000000233	CPSF1	92	81.370	ENSRBIG00000044907	CPSF1	100	82.407	Rhinopithecus_bieti
ENSLACG00000000233	CPSF1	92	81.490	ENSRROG00000044861	CPSF1	100	82.407	Rhinopithecus_roxellana
ENSLACG00000000233	CPSF1	95	68.440	ENSSBOG00000027177	CPSF1	84	81.250	Saimiri_boliviensis_boliviensis
ENSLACG00000000233	CPSF1	100	69.310	ENSSHAG00000006500	CPSF1	88	82.212	Sarcophilus_harrisii
ENSLACG00000000233	CPSF1	92	78.973	ENSSFOG00015004606	cpsf1	88	79.092	Scleropages_formosus
ENSLACG00000000233	CPSF1	92	78.495	ENSSMAG00000020547	cpsf1	87	78.495	Scophthalmus_maximus
ENSLACG00000000233	CPSF1	100	67.773	ENSSDUG00000001100	cpsf1	88	79.545	Seriola_dumerili
ENSLACG00000000233	CPSF1	100	67.773	ENSSLDG00000003619	cpsf1	88	79.641	Seriola_lalandi_dorsalis
ENSLACG00000000233	CPSF1	80	81.250	ENSSARG00000003643	CPSF1	79	81.250	Sorex_araneus
ENSLACG00000000233	CPSF1	87	84.856	ENSSPUG00000014396	CPSF1	100	81.481	Sphenodon_punctatus
ENSLACG00000000233	CPSF1	92	79.187	ENSSPAG00000005349	cpsf1	87	79.306	Stegastes_partitus
ENSLACG00000000233	CPSF1	92	81.731	ENSSSCG00000005906	CPSF1	88	81.731	Sus_scrofa
ENSLACG00000000233	CPSF1	92	73.260	ENSTRUG00000013134	cpsf1	88	73.580	Takifugu_rubripes
ENSLACG00000000233	CPSF1	97	73.713	ENSTNIG00000014027	cpsf1	92	73.823	Tetraodon_nigroviridis
ENSLACG00000000233	CPSF1	70	70.037	ENSTBEG00000001756	CPSF1	79	70.037	Tupaia_belangeri
ENSLACG00000000233	CPSF1	89	85.838	ENSTTRG00000001937	CPSF1	77	85.838	Tursiops_truncatus
ENSLACG00000000233	CPSF1	97	68.626	ENSUAMG00000006476	CPSF1	86	81.611	Ursus_americanus
ENSLACG00000000233	CPSF1	100	66.322	ENSXCOG00000003608	cpsf1	89	77.924	Xiphophorus_couchianus
ENSLACG00000000233	CPSF1	100	66.276	ENSXMAG00000005798	cpsf1	100	66.048	Xiphophorus_maculatus