EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000000628 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 76409 bases
Position: chrJH127309.1:3647-80055
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000000702	Ago_hook	PF10427.9	2.6e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000000708	-	5561	-	ENSLACP00000000702	1796 (aa)	-	H2ZTI1

Gene Model

Click here to download ENSLACG00000000628's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000000628's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000000628	-	73	33.891	ENSLACG00000006277	TNRC6A	90	36.933
ENSLACG00000000628	-	82	39.247	ENSLACG00000015283	TNRC6C	73	36.095

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000000628	-	99	61.079	ENSG00000100354	TNRC6B	96	78.808	Homo_sapiens
ENSLACG00000000628	-	99	61.396	ENSAMEG00000011025	TNRC6B	99	60.372	Ailuropoda_melanoleuca
ENSLACG00000000628	-	98	58.696	ENSAPLG00000009347	TNRC6B	50	53.523	Anas_platyrhynchos
ENSLACG00000000628	-	99	53.396	ENSACAG00000007281	TNRC6B	99	53.736	Anolis_carolinensis
ENSLACG00000000628	-	99	61.416	ENSANAG00000035042	TNRC6B	96	78.808	Aotus_nancymaae
ENSLACG00000000628	-	69	40.660	ENSAMXG00000008707	tnrc6b	74	43.444	Astyanax_mexicanus
ENSLACG00000000628	-	100	61.627	ENSBTAG00000021076	TNRC6B	99	61.299	Bos_taurus
ENSLACG00000000628	-	99	61.205	ENSCJAG00000002732	TNRC6B	96	78.808	Callithrix_jacchus
ENSLACG00000000628	-	99	61.044	ENSCAFG00000001255	TNRC6B	99	60.180	Canis_familiaris
ENSLACG00000000628	-	98	61.830	ENSCAFG00020002189	TNRC6B	98	61.543	Canis_lupus_dingo
ENSLACG00000000628	-	99	61.340	ENSCHIG00000003491	TNRC6B	99	61.202	Capra_hircus
ENSLACG00000000628	-	99	60.850	ENSTSYG00000011836	TNRC6B	96	77.483	Carlito_syrichta
ENSLACG00000000628	-	99	61.753	ENSCPOG00000005705	TNRC6B	99	61.450	Cavia_porcellus
ENSLACG00000000628	-	98	61.418	ENSCCAG00000019912	TNRC6B	96	78.808	Cebus_capucinus
ENSLACG00000000628	-	98	61.809	ENSCATG00000029291	TNRC6B	96	78.808	Cercocebus_atys
ENSLACG00000000628	-	98	61.693	ENSCLAG00000016942	TNRC6B	98	61.354	Chinchilla_lanigera
ENSLACG00000000628	-	99	60.220	ENSCSAG00000006021	TNRC6B	99	60.241	Chlorocebus_sabaeus
ENSLACG00000000628	-	91	60.654	ENSCPBG00000022932	TNRC6B	99	59.837	Chrysemys_picta_bellii
ENSLACG00000000628	-	99	61.164	ENSCANG00000030776	TNRC6B	96	78.808	Colobus_angolensis_palliatus
ENSLACG00000000628	-	95	61.825	ENSCGRG00001020166	Tnrc6b	97	60.937	Cricetulus_griseus_chok1gshd
ENSLACG00000000628	-	99	62.259	ENSCGRG00000016696	Tnrc6b	99	61.404	Cricetulus_griseus_crigri
ENSLACG00000000628	-	100	62.110	ENSDNOG00000012744	TNRC6B	99	61.564	Dasypus_novemcinctus
ENSLACG00000000628	-	99	62.225	ENSDORG00000003386	Tnrc6b	98	61.863	Dipodomys_ordii
ENSLACG00000000628	-	99	60.953	ENSEASG00005005306	TNRC6B	99	61.031	Equus_asinus_asinus
ENSLACG00000000628	-	99	62.075	ENSECAG00000009759	TNRC6B	99	61.824	Equus_caballus
ENSLACG00000000628	-	55	73.043	ENSEEUG00000008690	-	59	70.667	Erinaceus_europaeus
ENSLACG00000000628	-	99	62.212	ENSFCAG00000004791	TNRC6B	98	61.907	Felis_catus
ENSLACG00000000628	-	95	61.858	ENSFALG00000012195	TNRC6B	100	62.377	Ficedula_albicollis
ENSLACG00000000628	-	99	61.800	ENSFDAG00000021368	TNRC6B	98	61.551	Fukomys_damarensis
ENSLACG00000000628	-	99	63.551	ENSGALG00000012050	TNRC6B	98	63.621	Gallus_gallus
ENSLACG00000000628	-	99	62.025	ENSGAGG00000025188	TNRC6B	99	61.884	Gopherus_agassizii
ENSLACG00000000628	-	99	61.428	ENSGGOG00000008444	TNRC6B	96	78.808	Gorilla_gorilla
ENSLACG00000000628	-	99	61.303	ENSHGLG00000009306	TNRC6B	100	59.231	Heterocephalus_glaber_female
ENSLACG00000000628	-	99	61.572	ENSHGLG00100018108	TNRC6B	99	60.941	Heterocephalus_glaber_male
ENSLACG00000000628	-	67	48.670	ENSIPUG00000001515	tnrc6b	83	43.086	Ictalurus_punctatus
ENSLACG00000000628	-	99	62.445	ENSSTOG00000008927	TNRC6B	98	62.027	Ictidomys_tridecemlineatus
ENSLACG00000000628	-	99	62.073	ENSJJAG00000015779	Tnrc6b	98	61.821	Jaculus_jaculus
ENSLACG00000000628	-	77	60.156	ENSLAFG00000014473	TNRC6B	99	59.731	Loxodonta_africana
ENSLACG00000000628	-	98	61.947	ENSMFAG00000003862	TNRC6B	96	78.808	Macaca_fascicularis
ENSLACG00000000628	-	99	62.211	ENSMMUG00000021345	TNRC6B	96	78.808	Macaca_mulatta
ENSLACG00000000628	-	98	62.111	ENSMNEG00000042745	TNRC6B	99	61.667	Macaca_nemestrina
ENSLACG00000000628	-	99	61.164	ENSMLEG00000041780	TNRC6B	96	78.808	Mandrillus_leucophaeus
ENSLACG00000000628	-	100	62.063	ENSMGAG00000012333	TNRC6B	100	61.493	Meleagris_gallopavo
ENSLACG00000000628	-	99	62.107	ENSMAUG00000016123	Tnrc6b	98	61.416	Mesocricetus_auratus
ENSLACG00000000628	-	99	61.142	ENSMICG00000014056	TNRC6B	96	78.146	Microcebus_murinus
ENSLACG00000000628	-	99	60.132	ENSMOCG00000020334	Tnrc6b	98	61.459	Microtus_ochrogaster
ENSLACG00000000628	-	99	62.479	MGP_CAROLIEiJ_G0020043	Tnrc6b	98	61.897	Mus_caroli
ENSLACG00000000628	-	99	62.369	ENSMUSG00000047888	Tnrc6b	98	61.787	Mus_musculus
ENSLACG00000000628	-	99	62.259	MGP_PahariEiJ_G0020045	Tnrc6b	98	61.568	Mus_pahari
ENSLACG00000000628	-	99	62.479	MGP_SPRETEiJ_G0020941	Tnrc6b	98	61.842	Mus_spretus
ENSLACG00000000628	-	96	66.777	ENSMPUG00000016442	TNRC6B	99	57.060	Mustela_putorius_furo
ENSLACG00000000628	-	99	60.752	ENSMLUG00000008765	TNRC6B	99	59.936	Myotis_lucifugus
ENSLACG00000000628	-	99	61.699	ENSNGAG00000021294	Tnrc6b	98	61.614	Nannospalax_galili
ENSLACG00000000628	-	89	67.972	ENSNLEG00000015311	TNRC6B	96	78.808	Nomascus_leucogenys
ENSLACG00000000628	-	61	66.383	ENSOPRG00000012054	TNRC6B	62	67.213	Ochotona_princeps
ENSLACG00000000628	-	99	62.061	ENSODEG00000013146	TNRC6B	98	61.702	Octodon_degus
ENSLACG00000000628	-	99	61.949	ENSOCUG00000016128	TNRC6B	98	61.753	Oryctolagus_cuniculus
ENSLACG00000000628	-	99	60.348	ENSOGAG00000011096	TNRC6B	99	59.745	Otolemur_garnettii
ENSLACG00000000628	-	99	61.060	ENSOARG00000017238	TNRC6B	98	60.924	Ovis_aries
ENSLACG00000000628	-	99	61.132	ENSPPAG00000028514	TNRC6B	96	78.667	Pan_paniscus
ENSLACG00000000628	-	99	61.449	ENSPPRG00000017741	TNRC6B	96	78.808	Panthera_pardus
ENSLACG00000000628	-	99	58.727	ENSPTIG00000022064	TNRC6B	96	67.647	Panthera_tigris_altaica
ENSLACG00000000628	-	99	61.217	ENSPTRG00000047826	TNRC6B	96	78.808	Pan_troglodytes
ENSLACG00000000628	-	98	59.526	ENSPANG00000009271	TNRC6B	99	70.400	Papio_anubis
ENSLACG00000000628	-	99	61.957	ENSPSIG00000005318	TNRC6B	99	62.603	Pelodiscus_sinensis
ENSLACG00000000628	-	99	62.321	ENSPEMG00000011403	Tnrc6b	98	61.686	Peromyscus_maniculatus_bairdii
ENSLACG00000000628	-	99	60.055	ENSPCIG00000020347	TNRC6B	99	59.834	Phascolarctos_cinereus
ENSLACG00000000628	-	50	41.509	ENSPFOG00000006033	-	54	40.643	Poecilia_formosa
ENSLACG00000000628	-	67	42.321	ENSPLAG00000001418	-	83	41.389	Poecilia_latipinna
ENSLACG00000000628	-	50	49.254	ENSPMEG00000006371	-	87	44.103	Poecilia_mexicana
ENSLACG00000000628	-	99	58.256	ENSPPYG00000011849	TNRC6B	100	62.457	Pongo_abelii
ENSLACG00000000628	-	73	66.801	ENSPCAG00000008739	TNRC6B	76	64.916	Procavia_capensis
ENSLACG00000000628	-	99	61.620	ENSPCOG00000020790	TNRC6B	96	78.146	Propithecus_coquereli
ENSLACG00000000628	-	86	68.662	ENSPVAG00000004975	TNRC6B	89	68.813	Pteropus_vampyrus
ENSLACG00000000628	-	75	41.867	ENSPNAG00000011713	tnrc6b	76	44.196	Pygocentrus_nattereri
ENSLACG00000000628	-	99	61.501	ENSRNOG00000024907	Tnrc6b	98	60.763	Rattus_norvegicus
ENSLACG00000000628	-	99	61.164	ENSRBIG00000035576	TNRC6B	98	71.765	Rhinopithecus_bieti
ENSLACG00000000628	-	99	61.111	ENSRROG00000031135	TNRC6B	96	78.808	Rhinopithecus_roxellana
ENSLACG00000000628	-	99	59.879	ENSSBOG00000029743	TNRC6B	96	67.164	Saimiri_boliviensis_boliviensis
ENSLACG00000000628	-	99	58.839	ENSSHAG00000009692	TNRC6B	99	58.417	Sarcophilus_harrisii
ENSLACG00000000628	-	57	80.208	ENSSARG00000007971	-	57	80.208	Sorex_araneus
ENSLACG00000000628	-	91	60.807	ENSSPUG00000010801	TNRC6B	100	59.826	Sphenodon_punctatus
ENSLACG00000000628	-	99	62.067	ENSSSCG00000000078	TNRC6B	99	61.707	Sus_scrofa
ENSLACG00000000628	-	99	58.991	ENSTTRG00000011465	TNRC6B	98	58.519	Tursiops_truncatus
ENSLACG00000000628	-	99	61.315	ENSUAMG00000007174	TNRC6B	98	61.461	Ursus_americanus
ENSLACG00000000628	-	98	62.153	ENSUMAG00000014336	TNRC6B	100	60.917	Ursus_maritimus
ENSLACG00000000628	-	67	64.237	ENSVPAG00000001467	TNRC6B	73	65.806	Vicugna_pacos
ENSLACG00000000628	-	99	62.095	ENSVVUG00000007064	TNRC6B	99	61.736	Vulpes_vulpes
ENSLACG00000000628	-	55	41.333	ENSXCOG00000003042	-	53	41.242	Xiphophorus_couchianus