EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000000972 (Gene tree)
Gene ID: 102348185
Gene Symbol: SMG7
Alias: C1orf16|EST1C|KIAA0250|SGA56M|SMG-7
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 151112 bases
Position: chrJH128294.1:7686-158797
Accession: 102348185
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000001087	EST1	PF10374.9	3.1e-25	1	1
ENSLACP00000023613	EST1	PF10374.9	8.9e-25	1	1
ENSLACP00000001086	EST1	PF10374.9	9.4e-25	1	1
ENSLACP00000023613	EST1_DNA_bind	PF10373.9	1.1e-50	1	1
ENSLACP00000001087	EST1_DNA_bind	PF10373.9	1.1e-50	1	1
ENSLACP00000001086	EST1_DNA_bind	PF10373.9	1.2e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000001096	SMG7-202	7354	XM_006008240	ENSLACP00000001086	1197 (aa)	XP_006008302	H2ZUL5
ENSLACT00000025055	SMG7-201	7182	XM_006008242	ENSLACP00000023613	1148 (aa)	XP_006008304	M3XLK7
ENSLACT00000001097	SMG7-203	3459	-	ENSLACP00000001087	1152 (aa)	-	H2ZUL6

Gene Model

Click here to download ENSLACG00000000972's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000000972's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000000972	SMG7	99	75.760	ENSG00000116698	SMG7	86	94.969	Homo_sapiens
ENSLACG00000000972	SMG7	89	76.523	ENSAPOG00000009611	smg7	96	76.523	Acanthochromis_polyacanthus
ENSLACG00000000972	SMG7	99	76.153	ENSAMEG00000002357	SMG7	100	75.365	Ailuropoda_melanoleuca
ENSLACG00000000972	SMG7	97	66.019	ENSACIG00000015152	smg7	100	65.490	Amphilophus_citrinellus
ENSLACG00000000972	SMG7	95	72.841	ENSAOCG00000013538	smg7	99	68.215	Amphiprion_ocellaris
ENSLACG00000000972	SMG7	95	72.702	ENSAPEG00000007851	smg7	99	67.915	Amphiprion_percula
ENSLACG00000000972	SMG7	99	67.345	ENSATEG00000006931	smg7	99	67.373	Anabas_testudineus
ENSLACG00000000972	SMG7	99	75.000	ENSAPLG00000015811	SMG7	99	74.805	Anas_platyrhynchos
ENSLACG00000000972	SMG7	100	74.154	ENSACAG00000014989	SMG7	100	73.970	Anolis_carolinensis
ENSLACG00000000972	SMG7	99	75.521	ENSANAG00000028114	SMG7	90	90.964	Aotus_nancymaae
ENSLACG00000000972	SMG7	100	68.532	ENSACLG00000022079	smg7	100	68.263	Astatotilapia_calliptera
ENSLACG00000000972	SMG7	99	71.251	ENSAMXG00000020809	smg7	99	71.500	Astyanax_mexicanus
ENSLACG00000000972	SMG7	99	75.239	ENSBTAG00000008003	SMG7	99	74.913	Bos_taurus
ENSLACG00000000972	SMG7	99	75.847	ENSCJAG00000005135	SMG7	89	93.210	Callithrix_jacchus
ENSLACG00000000972	SMG7	99	76.021	ENSCAFG00000013276	SMG7	97	75.586	Canis_familiaris
ENSLACG00000000972	SMG7	99	76.021	ENSCAFG00020015475	SMG7	86	94.340	Canis_lupus_dingo
ENSLACG00000000972	SMG7	99	74.913	ENSCHIG00000018192	SMG7	99	75.281	Capra_hircus
ENSLACG00000000972	SMG7	99	75.455	ENSTSYG00000002667	SMG7	82	93.750	Carlito_syrichta
ENSLACG00000000972	SMG7	99	75.847	ENSCPOG00000008906	SMG7	99	74.956	Cavia_porcellus
ENSLACG00000000972	SMG7	99	75.608	ENSCCAG00000028596	SMG7	89	91.463	Cebus_capucinus
ENSLACG00000000972	SMG7	99	75.847	ENSCATG00000011063	SMG7	90	90.361	Cercocebus_atys
ENSLACG00000000972	SMG7	99	75.326	ENSCLAG00000010751	SMG7	99	75.260	Chinchilla_lanigera
ENSLACG00000000972	SMG7	99	75.673	ENSCSAG00000012654	SMG7	97	75.694	Chlorocebus_sabaeus
ENSLACG00000000972	SMG7	87	73.684	ENSCHOG00000010522	SMG7	89	73.684	Choloepus_hoffmanni
ENSLACG00000000972	SMG7	100	75.928	ENSCPBG00000015724	SMG7	100	75.948	Chrysemys_picta_bellii
ENSLACG00000000972	SMG7	99	75.523	ENSCANG00000015680	SMG7	90	90.964	Colobus_angolensis_palliatus
ENSLACG00000000972	SMG7	99	75.239	ENSCGRG00001013705	Smg7	99	75.130	Cricetulus_griseus_chok1gshd
ENSLACG00000000972	SMG7	99	75.239	ENSCGRG00000018401	Smg7	100	74.457	Cricetulus_griseus_crigri
ENSLACG00000000972	SMG7	95	72.500	ENSCVAG00000011842	smg7	100	65.461	Cyprinodon_variegatus
ENSLACG00000000972	SMG7	99	71.216	ENSDARG00000060767	smg7	99	70.885	Danio_rerio
ENSLACG00000000972	SMG7	99	74.891	ENSDORG00000007331	Smg7	99	74.913	Dipodomys_ordii
ENSLACG00000000972	SMG7	96	73.952	ENSETEG00000002654	SMG7	99	74.754	Echinops_telfairi
ENSLACG00000000972	SMG7	99	75.847	ENSEASG00005006524	SMG7	99	75.650	Equus_asinus_asinus
ENSLACG00000000972	SMG7	96	92.378	ENSECAG00000004313	SMG7	97	92.121	Equus_caballus
ENSLACG00000000972	SMG7	95	75.159	ENSEEUG00000002024	SMG7	92	74.819	Erinaceus_europaeus
ENSLACG00000000972	SMG7	93	78.748	ENSELUG00000010293	smg7	99	71.089	Esox_lucius
ENSLACG00000000972	SMG7	99	76.542	ENSFCAG00000010900	SMG7	99	77.889	Felis_catus
ENSLACG00000000972	SMG7	98	72.148	ENSFALG00000003047	SMG7	100	72.636	Ficedula_albicollis
ENSLACG00000000972	SMG7	99	75.130	ENSFDAG00000012121	SMG7	99	74.869	Fukomys_damarensis
ENSLACG00000000972	SMG7	99	65.506	ENSFHEG00000011073	smg7	99	65.789	Fundulus_heteroclitus
ENSLACG00000000972	SMG7	90	76.792	ENSGMOG00000004916	smg7	91	76.792	Gadus_morhua
ENSLACG00000000972	SMG7	100	75.410	ENSGALG00000004667	SMG7	100	75.215	Gallus_gallus
ENSLACG00000000972	SMG7	99	65.812	ENSGAFG00000019000	smg7	100	65.140	Gambusia_affinis
ENSLACG00000000972	SMG7	97	65.852	ENSGACG00000001634	smg7	99	65.794	Gasterosteus_aculeatus
ENSLACG00000000972	SMG7	99	75.847	ENSGGOG00000002342	SMG7	83	93.827	Gorilla_gorilla
ENSLACG00000000972	SMG7	100	68.541	ENSHBUG00000003726	smg7	98	73.604	Haplochromis_burtoni
ENSLACG00000000972	SMG7	99	74.913	ENSHGLG00000009353	SMG7	100	75.044	Heterocephalus_glaber_female
ENSLACG00000000972	SMG7	99	74.826	ENSHGLG00100009637	-	99	74.848	Heterocephalus_glaber_male
ENSLACG00000000972	SMG7	99	68.604	ENSHGLG00100004878	-	99	68.631	Heterocephalus_glaber_male
ENSLACG00000000972	SMG7	99	70.315	ENSIPUG00000016997	smg7	99	70.091	Ictalurus_punctatus
ENSLACG00000000972	SMG7	99	75.934	ENSSTOG00000000401	SMG7	99	75.781	Ictidomys_tridecemlineatus
ENSLACG00000000972	SMG7	99	74.935	ENSJJAG00000012351	Smg7	99	74.783	Jaculus_jaculus
ENSLACG00000000972	SMG7	97	62.261	ENSKMAG00000004900	smg7	97	72.500	Kryptolebias_marmoratus
ENSLACG00000000972	SMG7	51	64.587	ENSLBEG00000005220	-	75	66.372	Labrus_bergylta
ENSLACG00000000972	SMG7	99	66.298	ENSLBEG00000002983	smg7	99	65.990	Labrus_bergylta
ENSLACG00000000972	SMG7	99	74.007	ENSLOCG00000002010	smg7	99	73.924	Lepisosteus_oculatus
ENSLACG00000000972	SMG7	99	76.195	ENSLAFG00000008186	SMG7	99	76.649	Loxodonta_africana
ENSLACG00000000972	SMG7	99	75.934	ENSMFAG00000031653	SMG7	90	90.361	Macaca_fascicularis
ENSLACG00000000972	SMG7	99	75.847	ENSMMUG00000018458	SMG7	99	74.934	Macaca_mulatta
ENSLACG00000000972	SMG7	99	75.521	ENSMNEG00000034798	SMG7	90	90.361	Macaca_nemestrina
ENSLACG00000000972	SMG7	99	75.847	ENSMLEG00000037170	SMG7	100	74.700	Mandrillus_leucophaeus
ENSLACG00000000972	SMG7	81	74.576	ENSMAMG00000018733	smg7	86	66.605	Mastacembelus_armatus
ENSLACG00000000972	SMG7	100	68.994	ENSMZEG00005015247	smg7	100	68.263	Maylandia_zebra
ENSLACG00000000972	SMG7	99	75.000	ENSMGAG00000001561	SMG7	99	75.065	Meleagris_gallopavo
ENSLACG00000000972	SMG7	99	75.239	ENSMAUG00000019484	Smg7	99	75.347	Mesocricetus_auratus
ENSLACG00000000972	SMG7	99	76.195	ENSMICG00000007145	SMG7	83	93.750	Microcebus_murinus
ENSLACG00000000972	SMG7	99	75.065	ENSMOCG00000020748	Smg7	99	75.260	Microtus_ochrogaster
ENSLACG00000000972	SMG7	99	64.656	ENSMMOG00000001524	smg7	95	72.362	Mola_mola
ENSLACG00000000972	SMG7	92	74.766	ENSMODG00000007139	SMG7	99	74.603	Monodelphis_domestica
ENSLACG00000000972	SMG7	97	71.144	ENSMALG00000000061	smg7	93	70.647	Monopterus_albus
ENSLACG00000000972	SMG7	99	75.152	MGP_CAROLIEiJ_G0014704	Smg7	99	75.174	Mus_caroli
ENSLACG00000000972	SMG7	99	75.326	ENSMUSG00000042772	Smg7	99	75.434	Mus_musculus
ENSLACG00000000972	SMG7	99	75.326	MGP_PahariEiJ_G0027940	Smg7	99	75.434	Mus_pahari
ENSLACG00000000972	SMG7	99	75.239	MGP_SPRETEiJ_G0015511	Smg7	99	75.347	Mus_spretus
ENSLACG00000000972	SMG7	98	76.074	ENSMPUG00000011732	SMG7	97	75.635	Mustela_putorius_furo
ENSLACG00000000972	SMG7	99	75.496	ENSMLUG00000015417	SMG7	99	75.431	Myotis_lucifugus
ENSLACG00000000972	SMG7	100	75.108	ENSNGAG00000009836	Smg7	100	74.762	Nannospalax_galili
ENSLACG00000000972	SMG7	92	70.476	ENSNBRG00000024343	smg7	97	72.864	Neolamprologus_brichardi
ENSLACG00000000972	SMG7	99	76.021	ENSNLEG00000018018	SMG7	100	74.871	Nomascus_leucogenys
ENSLACG00000000972	SMG7	77	65.909	ENSMEUG00000004681	SMG7	73	71.545	Notamacropus_eugenii
ENSLACG00000000972	SMG7	96	69.335	ENSOPRG00000013942	SMG7	96	68.186	Ochotona_princeps
ENSLACG00000000972	SMG7	99	75.413	ENSODEG00000010390	SMG7	99	75.260	Octodon_degus
ENSLACG00000000972	SMG7	99	67.963	ENSONIG00000000277	smg7	99	67.766	Oreochromis_niloticus
ENSLACG00000000972	SMG7	98	74.476	ENSOANG00000000994	SMG7	100	74.607	Ornithorhynchus_anatinus
ENSLACG00000000972	SMG7	99	72.396	ENSOCUG00000005887	SMG7	92	72.483	Oryctolagus_cuniculus
ENSLACG00000000972	SMG7	100	65.546	ENSORLG00000007314	smg7	100	65.441	Oryzias_latipes
ENSLACG00000000972	SMG7	100	65.710	ENSORLG00020015779	smg7	100	65.617	Oryzias_latipes_hni
ENSLACG00000000972	SMG7	100	65.930	ENSORLG00015012289	smg7	100	65.421	Oryzias_latipes_hsok
ENSLACG00000000972	SMG7	100	65.874	ENSOMEG00000002328	smg7	100	65.686	Oryzias_melastigma
ENSLACG00000000972	SMG7	97	74.778	ENSOGAG00000003107	SMG7	94	74.510	Otolemur_garnettii
ENSLACG00000000972	SMG7	99	75.152	ENSOARG00000001352	SMG7	100	72.592	Ovis_aries
ENSLACG00000000972	SMG7	99	75.608	ENSPPAG00000031619	SMG7	90	90.964	Pan_paniscus
ENSLACG00000000972	SMG7	99	76.716	ENSPPRG00000011222	SMG7	99	75.868	Panthera_pardus
ENSLACG00000000972	SMG7	97	75.758	ENSPTIG00000007242	SMG7	100	75.451	Panthera_tigris_altaica
ENSLACG00000000972	SMG7	99	75.608	ENSPTRG00000001764	SMG7	90	92.121	Pan_troglodytes
ENSLACG00000000972	SMG7	99	75.847	ENSPANG00000004520	SMG7	99	75.542	Papio_anubis
ENSLACG00000000972	SMG7	99	67.828	ENSPKIG00000007242	smg7	99	70.352	Paramormyrops_kingsleyae
ENSLACG00000000972	SMG7	99	75.913	ENSPSIG00000012201	SMG7	100	75.088	Pelodiscus_sinensis
ENSLACG00000000972	SMG7	55	53.960	ENSPMGG00000021833	smg7	88	51.980	Periophthalmus_magnuspinnatus
ENSLACG00000000972	SMG7	99	74.805	ENSPEMG00000011315	Smg7	99	75.000	Peromyscus_maniculatus_bairdii
ENSLACG00000000972	SMG7	99	75.390	ENSPCIG00000003786	SMG7	89	93.750	Phascolarctos_cinereus
ENSLACG00000000972	SMG7	100	65.714	ENSPFOG00000019219	smg7	100	65.528	Poecilia_formosa
ENSLACG00000000972	SMG7	99	65.670	ENSPLAG00000001446	smg7	100	65.564	Poecilia_latipinna
ENSLACG00000000972	SMG7	97	64.991	ENSPMEG00000005218	smg7	99	64.799	Poecilia_mexicana
ENSLACG00000000972	SMG7	88	63.510	ENSPREG00000019039	smg7	92	63.485	Poecilia_reticulata
ENSLACG00000000972	SMG7	99	75.694	ENSPPYG00000000427	SMG7	99	75.716	Pongo_abelii
ENSLACG00000000972	SMG7	90	77.538	ENSPCAG00000008360	SMG7	88	77.538	Procavia_capensis
ENSLACG00000000972	SMG7	99	76.021	ENSPCOG00000011996	SMG7	97	75.673	Propithecus_coquereli
ENSLACG00000000972	SMG7	91	70.794	ENSPVAG00000000851	SMG7	89	71.105	Pteropus_vampyrus
ENSLACG00000000972	SMG7	100	68.653	ENSPNYG00000007643	smg7	100	68.293	Pundamilia_nyererei
ENSLACG00000000972	SMG7	99	70.944	ENSPNAG00000011374	smg7	99	73.632	Pygocentrus_nattereri
ENSLACG00000000972	SMG7	99	75.434	ENSRNOG00000027962	Smg7	99	77.015	Rattus_norvegicus
ENSLACG00000000972	SMG7	99	75.847	ENSRBIG00000036316	SMG7	100	74.700	Rhinopithecus_bieti
ENSLACG00000000972	SMG7	99	75.847	ENSRROG00000035719	SMG7	99	75.737	Rhinopithecus_roxellana
ENSLACG00000000972	SMG7	99	75.716	ENSSBOG00000023454	SMG7	86	94.969	Saimiri_boliviensis_boliviensis
ENSLACG00000000972	SMG7	99	74.675	ENSSHAG00000013147	SMG7	99	74.523	Sarcophilus_harrisii
ENSLACG00000000972	SMG7	99	72.908	ENSSFOG00015017252	smg7	100	78.646	Scleropages_formosus
ENSLACG00000000972	SMG7	100	67.731	ENSSMAG00000006067	smg7	98	70.051	Scophthalmus_maximus
ENSLACG00000000972	SMG7	95	72.500	ENSSDUG00000017543	smg7	99	67.483	Seriola_dumerili
ENSLACG00000000972	SMG7	99	75.326	ENSSPUG00000002064	SMG7	99	74.957	Sphenodon_punctatus
ENSLACG00000000972	SMG7	98	67.941	ENSSPAG00000008733	smg7	98	67.243	Stegastes_partitus
ENSLACG00000000972	SMG7	99	75.673	ENSSSCG00000015558	SMG7	99	75.477	Sus_scrofa
ENSLACG00000000972	SMG7	99	74.805	ENSTGUG00000003928	SMG7	100	74.870	Taeniopygia_guttata
ENSLACG00000000972	SMG7	99	64.087	ENSTNIG00000002802	smg7	99	63.445	Tetraodon_nigroviridis
ENSLACG00000000972	SMG7	77	71.784	ENSTBEG00000003220	SMG7	75	71.784	Tupaia_belangeri
ENSLACG00000000972	SMG7	96	74.596	ENSTTRG00000014778	SMG7	94	74.529	Tursiops_truncatus
ENSLACG00000000972	SMG7	96	72.874	ENSUAMG00000017473	SMG7	100	72.956	Ursus_americanus
ENSLACG00000000972	SMG7	96	75.760	ENSUMAG00000016389	SMG7	100	75.850	Ursus_maritimus
ENSLACG00000000972	SMG7	99	76.108	ENSVVUG00000008976	SMG7	99	77.889	Vulpes_vulpes
ENSLACG00000000972	SMG7	100	65.585	ENSXETG00000012528	smg7	100	65.073	Xenopus_tropicalis
ENSLACG00000000972	SMG7	99	65.506	ENSXMAG00000007123	smg7	100	65.535	Xiphophorus_maculatus