EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000001271 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 1974 bases
Position: chrJH128582.1:13684-15657
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000001419	RVT_1	PF00078.27	2.6e-24	1	1
ENSLACP00000001421	RVT_1	PF00078.27	5.7e-24	1	1
ENSLACP00000001420	RVT_1	PF00078.27	5.7e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000001431	-	1134	-	ENSLACP00000001419	378 (aa)	-	H2ZVJ8
ENSLACT00000001432	-	1533	-	ENSLACP00000001420	511 (aa)	-	H2ZVJ9
ENSLACT00000001433	-	1455	-	ENSLACP00000001421	485 (aa)	-	H2ZVK0

Gene Model

Click here to download ENSLACG00000001271's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000001271's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000001271	-	77	36.393	ENSLACG00000006083	-	99	36.393
ENSLACG00000001271	-	67	36.641	ENSLACG00000011106	-	100	36.122
ENSLACG00000001271	-	100	43.976	ENSLACG00000012911	-	77	43.738
ENSLACG00000001271	-	90	34.989	ENSLACG00000006107	-	75	34.792
ENSLACG00000001271	-	79	35.922	ENSLACG00000013546	-	98	34.646
ENSLACG00000001271	-	71	41.259	ENSLACG00000000966	-	84	41.259
ENSLACG00000001271	-	76	36.333	ENSLACG00000010696	-	97	36.333
ENSLACG00000001271	-	74	31.351	ENSLACG00000005758	-	90	42.683
ENSLACG00000001271	-	77	32.051	ENSLACG00000013633	-	74	31.450
ENSLACG00000001271	-	97	67.213	ENSLACG00000004233	-	77	65.619
ENSLACG00000001271	-	66	35.258	ENSLACG00000001539	-	68	34.971
ENSLACG00000001271	-	65	36.614	ENSLACG00000008392	-	100	35.741
ENSLACG00000001271	-	82	37.897	ENSLACG00000004832	-	76	37.907
ENSLACG00000001271	-	85	34.651	ENSLACG00000016962	-	100	37.805
ENSLACG00000001271	-	99	36.415	ENSLACG00000013644	-	63	36.415

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000001271	-	84	41.033	ENSPFOG00000024591	-	100	41.033	Poecilia_formosa