EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000001394 (Gene tree)
Gene ID: 102346927
Gene Symbol: SCAF8
Alias: KIAA1116|RBM16
Full Name: SR-related CTD associated factor 8
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 159204 bases
Position: chrJH127604.1:17817-177020
Accession: 102346927
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000001561	RRM_1	PF00076.22	5.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000001574	SCAF8-201	3213	XM_006004356	ENSLACP00000001561	1071 (aa)	-	H2ZVZ0

Gene Model

Click here to download ENSLACG00000001394's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000001394's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000001394	SCAF8	60	48.432	ENSLACG00000013913	SCAF4	73	46.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000001394	SCAF8	99	63.162	ENSG00000213079	SCAF8	88	75.761	Homo_sapiens
ENSLACG00000001394	SCAF8	99	63.100	ENSAMEG00000007583	SCAF8	81	78.344	Ailuropoda_melanoleuca
ENSLACG00000001394	SCAF8	99	61.696	ENSAOCG00000002421	SCAF8	77	62.467	Amphiprion_ocellaris
ENSLACG00000001394	SCAF8	97	55.266	ENSAPEG00000020115	SCAF8	74	72.958	Amphiprion_percula
ENSLACG00000001394	SCAF8	99	60.288	ENSATEG00000006959	SCAF8	96	60.936	Anabas_testudineus
ENSLACG00000001394	SCAF8	99	76.132	ENSAPLG00000005765	SCAF8	85	76.829	Anas_platyrhynchos
ENSLACG00000001394	SCAF8	99	68.812	ENSACAG00000005282	SCAF8	84	75.858	Anolis_carolinensis
ENSLACG00000001394	SCAF8	99	62.848	ENSANAG00000036184	SCAF8	88	75.951	Aotus_nancymaae
ENSLACG00000001394	SCAF8	50	52.964	ENSAMXG00000008585	scaf4a	51	53.543	Astyanax_mexicanus
ENSLACG00000001394	SCAF8	99	72.594	ENSCJAG00000012631	SCAF8	83	75.706	Callithrix_jacchus
ENSLACG00000001394	SCAF8	99	74.601	ENSTSYG00000010991	SCAF8	86	76.471	Carlito_syrichta
ENSLACG00000001394	SCAF8	70	66.667	ENSCAPG00000003300	SCAF8	80	66.667	Cavia_aperea
ENSLACG00000001394	SCAF8	99	57.009	ENSCPOG00000022216	-	88	65.063	Cavia_porcellus
ENSLACG00000001394	SCAF8	99	57.801	ENSCPOG00000030311	-	59	51.690	Cavia_porcellus
ENSLACG00000001394	SCAF8	99	73.006	ENSCCAG00000024952	SCAF8	88	75.518	Cebus_capucinus
ENSLACG00000001394	SCAF8	99	63.100	ENSCATG00000035361	SCAF8	88	76.074	Cercocebus_atys
ENSLACG00000001394	SCAF8	99	63.016	ENSCSAG00000013430	SCAF8	86	76.074	Chlorocebus_sabaeus
ENSLACG00000001394	SCAF8	100	77.189	ENSCPBG00000016330	SCAF8	81	76.736	Chrysemys_picta_bellii
ENSLACG00000001394	SCAF8	99	62.848	ENSCANG00000039499	SCAF8	88	75.828	Colobus_angolensis_palliatus
ENSLACG00000001394	SCAF8	99	62.395	ENSCGRG00001020167	Scaf8	88	75.735	Cricetulus_griseus_chok1gshd
ENSLACG00000001394	SCAF8	99	62.395	ENSCGRG00000004120	Scaf8	88	75.735	Cricetulus_griseus_crigri
ENSLACG00000001394	SCAF8	99	61.939	ENSCSEG00000000043	-	78	62.444	Cynoglossus_semilaevis
ENSLACG00000001394	SCAF8	84	72.625	ENSDNOG00000025271	SCAF8	54	64.110	Dasypus_novemcinctus
ENSLACG00000001394	SCAF8	99	73.150	ENSDORG00000006391	Scaf8	87	74.940	Dipodomys_ordii
ENSLACG00000001394	SCAF8	99	63.277	ENSEASG00005018879	SCAF8	83	78.283	Equus_asinus_asinus
ENSLACG00000001394	SCAF8	99	62.785	ENSECAG00000005540	SCAF8	83	77.876	Equus_caballus
ENSLACG00000001394	SCAF8	99	62.910	ENSFCAG00000023424	SCAF8	86	77.876	Felis_catus
ENSLACG00000001394	SCAF8	99	77.764	ENSFALG00000012433	SCAF8	84	78.058	Ficedula_albicollis
ENSLACG00000001394	SCAF8	86	61.594	ENSGMOG00000018812	SCAF8	83	61.333	Gadus_morhua
ENSLACG00000001394	SCAF8	99	70.032	ENSGALG00000013635	SCAF8	87	74.564	Gallus_gallus
ENSLACG00000001394	SCAF8	100	56.525	ENSGACG00000006909	SCAF8	100	57.143	Gasterosteus_aculeatus
ENSLACG00000001394	SCAF8	56	63.143	ENSGAGG00000017820	-	71	64.345	Gopherus_agassizii
ENSLACG00000001394	SCAF8	99	62.932	ENSGGOG00000008645	SCAF8	88	76.074	Gorilla_gorilla
ENSLACG00000001394	SCAF8	99	61.415	ENSHBUG00000019537	SCAF8	80	60.854	Haplochromis_burtoni
ENSLACG00000001394	SCAF8	55	44.695	ENSIPUG00000019311	-	74	45.106	Ictalurus_punctatus
ENSLACG00000001394	SCAF8	99	73.988	ENSSTOG00000026043	SCAF8	88	75.828	Ictidomys_tridecemlineatus
ENSLACG00000001394	SCAF8	93	77.953	ENSJJAG00000020480	Scaf8	82	79.790	Jaculus_jaculus
ENSLACG00000001394	SCAF8	81	79.259	ENSLBEG00000012484	-	64	77.551	Labrus_bergylta
ENSLACG00000001394	SCAF8	100	64.711	ENSLOCG00000016856	SCAF8	93	60.444	Lepisosteus_oculatus
ENSLACG00000001394	SCAF8	99	63.016	ENSMFAG00000032738	SCAF8	88	75.761	Macaca_fascicularis
ENSLACG00000001394	SCAF8	99	63.016	ENSMMUG00000015163	SCAF8	88	75.761	Macaca_mulatta
ENSLACG00000001394	SCAF8	99	63.016	ENSMNEG00000043466	SCAF8	88	76.074	Macaca_nemestrina
ENSLACG00000001394	SCAF8	99	62.932	ENSMLEG00000034845	SCAF8	88	75.951	Mandrillus_leucophaeus
ENSLACG00000001394	SCAF8	99	78.392	ENSMGAG00000012762	SCAF8	89	73.788	Meleagris_gallopavo
ENSLACG00000001394	SCAF8	99	62.753	ENSMAUG00000009513	Scaf8	88	75.858	Mesocricetus_auratus
ENSLACG00000001394	SCAF8	99	76.051	ENSMICG00000028965	SCAF8	86	77.623	Microcebus_murinus
ENSLACG00000001394	SCAF8	99	63.162	ENSMOCG00000014950	Scaf8	88	75.613	Microtus_ochrogaster
ENSLACG00000001394	SCAF8	97	58.643	ENSMMOG00000002216	SCAF8	77	59.720	Mola_mola
ENSLACG00000001394	SCAF8	99	74.969	ENSMODG00000008301	SCAF8	87	75.120	Monodelphis_domestica
ENSLACG00000001394	SCAF8	99	72.209	MGP_CAROLIEiJ_G0021016	Scaf8	90	73.641	Mus_caroli
ENSLACG00000001394	SCAF8	99	72.451	ENSMUSG00000046201	Scaf8	88	75.243	Mus_musculus
ENSLACG00000001394	SCAF8	99	72.694	MGP_PahariEiJ_G0023334	Scaf8	88	75.607	Mus_pahari
ENSLACG00000001394	SCAF8	99	62.742	ENSMPUG00000001974	SCAF8	84	78.217	Mustela_putorius_furo
ENSLACG00000001394	SCAF8	99	62.176	ENSMLUG00000029190	SCAF8	86	77.623	Myotis_lucifugus
ENSLACG00000001394	SCAF8	99	63.814	ENSNGAG00000012332	Scaf8	84	78.913	Nannospalax_galili
ENSLACG00000001394	SCAF8	99	58.541	ENSNBRG00000009067	SCAF8	53	48.080	Neolamprologus_brichardi
ENSLACG00000001394	SCAF8	99	61.797	ENSNLEG00000015509	SCAF8	88	74.359	Nomascus_leucogenys
ENSLACG00000001394	SCAF8	72	81.443	ENSOPRG00000018413	-	70	81.443	Ochotona_princeps
ENSLACG00000001394	SCAF8	63	54.054	ENSONIG00000004687	scaf4a	66	54.392	Oreochromis_niloticus
ENSLACG00000001394	SCAF8	99	61.210	ENSONIG00000008119	SCAF8	92	61.812	Oreochromis_niloticus
ENSLACG00000001394	SCAF8	99	63.246	ENSOCUG00000026063	SCAF8	88	76.442	Oryctolagus_cuniculus
ENSLACG00000001394	SCAF8	88	82.202	ENSOGAG00000034223	SCAF8	81	78.089	Otolemur_garnettii
ENSLACG00000001394	SCAF8	99	63.078	ENSPPAG00000039826	SCAF8	88	76.074	Pan_paniscus
ENSLACG00000001394	SCAF8	99	63.013	ENSPPRG00000023175	SCAF8	87	76.667	Panthera_pardus
ENSLACG00000001394	SCAF8	99	63.109	ENSPTIG00000014836	SCAF8	87	76.894	Panthera_tigris_altaica
ENSLACG00000001394	SCAF8	99	63.162	ENSPTRG00000018727	SCAF8	88	75.639	Pan_troglodytes
ENSLACG00000001394	SCAF8	99	62.932	ENSPANG00000017489	SCAF8	88	73.775	Papio_anubis
ENSLACG00000001394	SCAF8	100	65.273	ENSPKIG00000021212	SCAF8	52	55.626	Paramormyrops_kingsleyae
ENSLACG00000001394	SCAF8	87	73.204	ENSPSIG00000008614	SCAF8	71	74.328	Pelodiscus_sinensis
ENSLACG00000001394	SCAF8	99	62.742	ENSPEMG00000010531	Scaf8	88	75.368	Peromyscus_maniculatus_bairdii
ENSLACG00000001394	SCAF8	99	64.280	ENSPCIG00000001141	SCAF8	86	76.341	Phascolarctos_cinereus
ENSLACG00000001394	SCAF8	53	51.205	ENSPFOG00000017156	scaf4a	57	52.402	Poecilia_formosa
ENSLACG00000001394	SCAF8	99	59.375	ENSPMEG00000007591	SCAF8	50	50.155	Poecilia_mexicana
ENSLACG00000001394	SCAF8	99	72.871	ENSPPYG00000017121	SCAF8	88	73.998	Pongo_abelii
ENSLACG00000001394	SCAF8	86	84.641	ENSPCAG00000013044	SCAF8	73	84.641	Procavia_capensis
ENSLACG00000001394	SCAF8	99	63.184	ENSPCOG00000002067	SCAF8	85	78.372	Propithecus_coquereli
ENSLACG00000001394	SCAF8	98	75.601	ENSPVAG00000005582	SCAF8	84	76.545	Pteropus_vampyrus
ENSLACG00000001394	SCAF8	99	60.695	ENSPNAG00000024740	SCAF8	82	61.392	Pygocentrus_nattereri
ENSLACG00000001394	SCAF8	99	61.564	ENSRNOG00000016919	Scaf8	84	78.488	Rattus_norvegicus
ENSLACG00000001394	SCAF8	99	62.932	ENSRBIG00000035769	SCAF8	88	75.951	Rhinopithecus_bieti
ENSLACG00000001394	SCAF8	99	62.848	ENSRROG00000013580	SCAF8	88	75.828	Rhinopithecus_roxellana
ENSLACG00000001394	SCAF8	99	73.691	ENSSBOG00000027023	SCAF8	88	75.639	Saimiri_boliviensis_boliviensis
ENSLACG00000001394	SCAF8	99	73.971	ENSSHAG00000009915	SCAF8	85	73.780	Sarcophilus_harrisii
ENSLACG00000001394	SCAF8	99	59.824	ENSSFOG00015009481	SCAF8	55	48.000	Scleropages_formosus
ENSLACG00000001394	SCAF8	99	60.000	ENSSMAG00000008275	SCAF8	77	60.545	Scophthalmus_maximus
ENSLACG00000001394	SCAF8	57	51.181	ENSSMAG00000017901	scaf4a	52	50.588	Scophthalmus_maximus
ENSLACG00000001394	SCAF8	99	76.485	ENSSPUG00000015219	SCAF8	83	75.732	Sphenodon_punctatus
ENSLACG00000001394	SCAF8	99	73.095	ENSSSCG00000004070	SCAF8	90	75.000	Sus_scrofa
ENSLACG00000001394	SCAF8	99	77.154	ENSTGUG00000011151	SCAF8	86	77.423	Taeniopygia_guttata
ENSLACG00000001394	SCAF8	99	59.173	ENSTRUG00000009243	SCAF8	78	59.875	Takifugu_rubripes
ENSLACG00000001394	SCAF8	52	47.492	ENSTRUG00000009536	-	51	63.253	Takifugu_rubripes
ENSLACG00000001394	SCAF8	99	58.482	ENSTNIG00000016885	SCAF8	58	47.385	Tetraodon_nigroviridis
ENSLACG00000001394	SCAF8	99	75.249	ENSTTRG00000014538	SCAF8	87	77.239	Tursiops_truncatus
ENSLACG00000001394	SCAF8	99	63.100	ENSUAMG00000024736	SCAF8	86	78.471	Ursus_americanus
ENSLACG00000001394	SCAF8	57	46.296	ENSUMAG00000016962	SCAF4	81	53.472	Ursus_maritimus
ENSLACG00000001394	SCAF8	98	62.713	ENSUMAG00000013404	SCAF8	86	78.052	Ursus_maritimus
ENSLACG00000001394	SCAF8	65	73.167	ENSVPAG00000012465	SCAF8	92	69.716	Vicugna_pacos
ENSLACG00000001394	SCAF8	99	63.246	ENSVVUG00000007532	SCAF8	86	78.052	Vulpes_vulpes
ENSLACG00000001394	SCAF8	90	76.128	ENSXETG00000013132	scaf8	53	75.798	Xenopus_tropicalis