EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000001576 (Gene tree)
Gene ID: 102354329
Gene Symbol: -
Alias: -
Full Name: valyl-tRNA synthetase 2%2C mitochondrial
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 38481 bases
Position: chrJH126993.1:23070-61550
Accession: 102354329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000001764	Anticodon_1	PF08264.13	6.5e-35	1	1
ENSLACP00000001764	tRNA-synt_1	PF00133.22	1.9e-155	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000001777	-	3972	XM_005998150	ENSLACP00000001764	1036 (aa)	-	H2ZWJ3

Gene Model

Click here to download ENSLACG00000001576's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000001576's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000001576	-	89	50.586	ENSLACG00000015232	VARS	79	49.335

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000001576	-	98	50.914	ENSAPOG00000007396	vars2	96	50.424	Acanthochromis_polyacanthus
ENSLACG00000001576	-	99	53.204	ENSAMEG00000012997	VARS2	92	53.107	Ailuropoda_melanoleuca
ENSLACG00000001576	-	99	50.812	ENSACIG00000004344	vars2	96	50.334	Amphilophus_citrinellus
ENSLACG00000001576	-	98	51.011	ENSAOCG00000000476	vars2	96	50.518	Amphiprion_ocellaris
ENSLACG00000001576	-	98	51.011	ENSAPEG00000008646	vars2	94	50.424	Amphiprion_percula
ENSLACG00000001576	-	99	51.901	ENSATEG00000012291	vars2	96	51.714	Anabas_testudineus
ENSLACG00000001576	-	99	55.706	ENSACAG00000022093	VARS2	95	55.706	Anolis_carolinensis
ENSLACG00000001576	-	99	52.132	ENSANAG00000038018	VARS2	95	52.035	Aotus_nancymaae
ENSLACG00000001576	-	99	50.803	ENSACLG00000018673	vars2	97	50.803	Astatotilapia_calliptera
ENSLACG00000001576	-	98	53.308	ENSAMXG00000017773	vars2	95	54.702	Astyanax_mexicanus
ENSLACG00000001576	-	99	52.326	ENSBTAG00000010698	VARS2	95	52.077	Bos_taurus
ENSLACG00000001576	-	99	52.326	ENSCJAG00000019826	VARS2	95	52.229	Callithrix_jacchus
ENSLACG00000001576	-	99	53.061	ENSCAFG00000000454	VARS2	95	52.964	Canis_familiaris
ENSLACG00000001576	-	94	51.837	ENSCAFG00020019387	VARS2	90	56.125	Canis_lupus_dingo
ENSLACG00000001576	-	99	52.119	ENSCHIG00000007847	VARS2	95	51.873	Capra_hircus
ENSLACG00000001576	-	99	52.621	ENSTSYG00000009904	VARS2	95	52.372	Carlito_syrichta
ENSLACG00000001576	-	88	53.728	ENSCAPG00000017770	VARS2	96	53.728	Cavia_aperea
ENSLACG00000001576	-	99	52.077	ENSCPOG00000021834	VARS2	95	52.174	Cavia_porcellus
ENSLACG00000001576	-	99	52.469	ENSCCAG00000037907	VARS2	95	52.372	Cebus_capucinus
ENSLACG00000001576	-	99	52.136	ENSCATG00000032554	VARS2	95	51.888	Cercocebus_atys
ENSLACG00000001576	-	99	51.553	ENSCLAG00000002889	VARS2	95	51.553	Chinchilla_lanigera
ENSLACG00000001576	-	99	52.427	ENSCSAG00000008327	VARS2	95	52.330	Chlorocebus_sabaeus
ENSLACG00000001576	-	95	56.897	ENSCPBG00000021502	VARS2	96	56.853	Chrysemys_picta_bellii
ENSLACG00000001576	-	99	52.039	ENSCANG00000014991	VARS2	94	51.791	Colobus_angolensis_palliatus
ENSLACG00000001576	-	99	52.031	ENSCGRG00001021535	Vars2	95	51.934	Cricetulus_griseus_chok1gshd
ENSLACG00000001576	-	99	52.031	ENSCGRG00000014112	Vars2	95	51.934	Cricetulus_griseus_crigri
ENSLACG00000001576	-	82	72.727	ENSCSEG00000015432	vars2	90	72.727	Cynoglossus_semilaevis
ENSLACG00000001576	-	67	55.197	ENSCVAG00000017765	vars2	98	55.197	Cyprinodon_variegatus
ENSLACG00000001576	-	99	52.885	ENSDARG00000056717	vars2	96	52.697	Danio_rerio
ENSLACG00000001576	-	82	53.121	ENSDORG00000008516	Vars2	92	53.121	Dipodomys_ordii
ENSLACG00000001576	-	99	46.968	ENSETEG00000014844	VARS2	95	46.776	Echinops_telfairi
ENSLACG00000001576	-	99	52.317	ENSEASG00005019997	VARS2	94	54.000	Equus_asinus_asinus
ENSLACG00000001576	-	99	52.850	ENSECAG00000018202	VARS2	95	52.754	Equus_caballus
ENSLACG00000001576	-	65	47.387	ENSEEUG00000012591	-	63	47.387	Erinaceus_europaeus
ENSLACG00000001576	-	97	52.395	ENSELUG00000017824	vars2	96	51.786	Esox_lucius
ENSLACG00000001576	-	99	52.907	ENSFCAG00000010531	VARS2	95	52.810	Felis_catus
ENSLACG00000001576	-	99	51.834	ENSFDAG00000017216	VARS2	95	51.834	Fukomys_damarensis
ENSLACG00000001576	-	90	49.947	ENSFHEG00000013932	vars2	94	49.074	Fundulus_heteroclitus
ENSLACG00000001576	-	93	52.738	ENSGMOG00000018960	vars2	96	53.928	Gadus_morhua
ENSLACG00000001576	-	81	60.606	ENSGAFG00000004737	vars2	95	49.577	Gambusia_affinis
ENSLACG00000001576	-	96	52.083	ENSGACG00000001464	vars2	99	51.984	Gasterosteus_aculeatus
ENSLACG00000001576	-	94	57.986	ENSGAGG00000011652	VARS2	98	57.986	Gopherus_agassizii
ENSLACG00000001576	-	99	52.326	ENSGGOG00000014587	VARS2	95	52.229	Gorilla_gorilla
ENSLACG00000001576	-	98	49.665	ENSHBUG00000002448	vars2	97	49.185	Haplochromis_burtoni
ENSLACG00000001576	-	99	52.233	ENSHGLG00000012886	VARS2	91	52.039	Heterocephalus_glaber_female
ENSLACG00000001576	-	99	52.136	ENSHGLG00100016535	VARS2	95	51.942	Heterocephalus_glaber_male
ENSLACG00000001576	-	74	51.488	ENSHCOG00000017907	vars2	97	54.150	Hippocampus_comes
ENSLACG00000001576	-	96	53.945	ENSIPUG00000015573	Vars2	95	52.885	Ictalurus_punctatus
ENSLACG00000001576	-	99	52.279	ENSSTOG00000009924	VARS2	95	52.182	Ictidomys_tridecemlineatus
ENSLACG00000001576	-	99	52.524	ENSJJAG00000011144	Vars2	95	52.275	Jaculus_jaculus
ENSLACG00000001576	-	99	50.849	ENSKMAG00000001393	vars2	96	50.613	Kryptolebias_marmoratus
ENSLACG00000001576	-	100	50.377	ENSLBEG00000011949	vars2	96	50.283	Labrus_bergylta
ENSLACG00000001576	-	51	62.429	ENSLBEG00000005480	-	76	62.049	Labrus_bergylta
ENSLACG00000001576	-	99	52.565	ENSLAFG00000015183	VARS2	95	52.372	Loxodonta_africana
ENSLACG00000001576	-	99	51.942	ENSMFAG00000042367	VARS2	95	51.694	Macaca_fascicularis
ENSLACG00000001576	-	99	52.039	ENSMMUG00000018609	VARS2	95	51.942	Macaca_mulatta
ENSLACG00000001576	-	99	52.178	ENSMNEG00000043163	VARS2	95	52.081	Macaca_nemestrina
ENSLACG00000001576	-	99	52.330	ENSMLEG00000041728	VARS2	92	52.233	Mandrillus_leucophaeus
ENSLACG00000001576	-	99	50.379	ENSMAMG00000020339	vars2	96	50.284	Mastacembelus_armatus
ENSLACG00000001576	-	99	50.803	ENSMZEG00005017669	vars2	97	50.803	Maylandia_zebra
ENSLACG00000001576	-	99	52.081	ENSMAUG00000018946	Vars2	95	51.985	Mesocricetus_auratus
ENSLACG00000001576	-	83	55.376	ENSMICG00000005365	VARS2	95	55.260	Microcebus_murinus
ENSLACG00000001576	-	99	47.338	ENSMOCG00000014607	Vars2	95	55.651	Microtus_ochrogaster
ENSLACG00000001576	-	97	51.429	ENSMMOG00000012122	vars2	96	50.576	Mola_mola
ENSLACG00000001576	-	99	50.482	ENSMODG00000015848	VARS2	94	50.385	Monodelphis_domestica
ENSLACG00000001576	-	95	51.049	ENSMALG00000009217	vars2	98	51.004	Monopterus_albus
ENSLACG00000001576	-	99	52.473	MGP_CAROLIEiJ_G0021529	Vars2	97	59.683	Mus_caroli
ENSLACG00000001576	-	99	51.985	ENSMUSG00000038838	Vars2	97	59.051	Mus_musculus
ENSLACG00000001576	-	99	52.233	MGP_PahariEiJ_G0020523	Vars2	96	59.541	Mus_pahari
ENSLACG00000001576	-	99	52.081	MGP_SPRETEiJ_G0022436	Vars2	97	59.331	Mus_spretus
ENSLACG00000001576	-	99	53.682	ENSMPUG00000011643	VARS2	95	53.585	Mustela_putorius_furo
ENSLACG00000001576	-	96	54.372	ENSMLUG00000002356	VARS2	89	54.573	Myotis_lucifugus
ENSLACG00000001576	-	99	48.599	ENSNGAG00000020607	Vars2	95	48.502	Nannospalax_galili
ENSLACG00000001576	-	63	40.691	ENSNBRG00000001624	vars2	57	40.594	Neolamprologus_brichardi
ENSLACG00000001576	-	96	52.012	ENSNLEG00000005625	VARS2	90	51.911	Nomascus_leucogenys
ENSLACG00000001576	-	78	54.799	ENSMEUG00000014475	VARS2	86	54.799	Notamacropus_eugenii
ENSLACG00000001576	-	88	52.128	ENSOPRG00000000682	VARS2	85	51.892	Ochotona_princeps
ENSLACG00000001576	-	99	52.132	ENSODEG00000017965	VARS2	95	52.077	Octodon_degus
ENSLACG00000001576	-	67	52.840	ENSONIG00000004734	vars2	70	52.357	Oreochromis_niloticus
ENSLACG00000001576	-	81	67.647	ENSOANG00000000398	-	97	46.790	Ornithorhynchus_anatinus
ENSLACG00000001576	-	99	49.618	ENSOCUG00000021496	VARS2	61	49.618	Oryctolagus_cuniculus
ENSLACG00000001576	-	97	50.818	ENSORLG00000010632	vars2	95	50.568	Oryzias_latipes
ENSLACG00000001576	-	97	51.107	ENSORLG00020018584	vars2	95	50.758	Oryzias_latipes_hni
ENSLACG00000001576	-	97	50.965	ENSORLG00015010408	vars2	95	50.663	Oryzias_latipes_hsok
ENSLACG00000001576	-	97	51.541	ENSOMEG00000008360	vars2	95	51.040	Oryzias_melastigma
ENSLACG00000001576	-	99	52.519	ENSOGAG00000006087	VARS2	92	52.422	Otolemur_garnettii
ENSLACG00000001576	-	99	51.737	ENSOARG00000010844	VARS2	94	51.641	Ovis_aries
ENSLACG00000001576	-	99	52.422	ENSPPAG00000041141	VARS2	95	52.326	Pan_paniscus
ENSLACG00000001576	-	99	52.519	ENSPPRG00000006751	VARS2	93	52.422	Panthera_pardus
ENSLACG00000001576	-	99	52.524	ENSPTIG00000017799	VARS2	98	52.611	Panthera_tigris_altaica
ENSLACG00000001576	-	99	52.422	ENSPTRG00000034497	VARS2	95	52.326	Pan_troglodytes
ENSLACG00000001576	-	99	52.233	ENSPANG00000018481	VARS2	95	52.864	Papio_anubis
ENSLACG00000001576	-	100	52.727	ENSPKIG00000011372	vars2	96	52.778	Paramormyrops_kingsleyae
ENSLACG00000001576	-	62	65.884	ENSPSIG00000006206	VARS2	92	65.031	Pelodiscus_sinensis
ENSLACG00000001576	-	100	50.803	ENSPMGG00000000465	vars2	97	50.565	Periophthalmus_magnuspinnatus
ENSLACG00000001576	-	99	52.616	ENSPEMG00000014691	Vars2	95	52.519	Peromyscus_maniculatus_bairdii
ENSLACG00000001576	-	96	53.159	ENSPCIG00000015040	VARS2	95	51.981	Phascolarctos_cinereus
ENSLACG00000001576	-	96	49.756	ENSPFOG00000017616	vars2	95	48.950	Poecilia_formosa
ENSLACG00000001576	-	96	49.610	ENSPLAG00000019778	vars2	96	48.811	Poecilia_latipinna
ENSLACG00000001576	-	96	49.610	ENSPMEG00000011123	vars2	95	48.811	Poecilia_mexicana
ENSLACG00000001576	-	94	45.075	ENSPREG00000014998	vars2	90	45.915	Poecilia_reticulata
ENSLACG00000001576	-	99	52.229	ENSPPYG00000016424	VARS2	95	51.981	Pongo_abelii
ENSLACG00000001576	-	82	53.377	ENSPCAG00000006946	VARS2	79	53.377	Procavia_capensis
ENSLACG00000001576	-	99	51.981	ENSPCOG00000014839	VARS2	92	51.884	Propithecus_coquereli
ENSLACG00000001576	-	99	52.224	ENSPVAG00000004197	VARS2	95	51.977	Pteropus_vampyrus
ENSLACG00000001576	-	86	51.436	ENSPNYG00000010314	vars2	100	50.919	Pundamilia_nyererei
ENSLACG00000001576	-	99	53.758	ENSPNAG00000026793	vars2	94	53.876	Pygocentrus_nattereri
ENSLACG00000001576	-	99	51.838	ENSRNOG00000000833	Vars2	95	51.741	Rattus_norvegicus
ENSLACG00000001576	-	99	52.178	ENSRBIG00000032725	VARS2	95	51.931	Rhinopithecus_bieti
ENSLACG00000001576	-	99	52.136	ENSRROG00000043847	VARS2	95	51.888	Rhinopithecus_roxellana
ENSLACG00000001576	-	99	50.995	ENSSBOG00000033240	VARS2	93	50.900	Saimiri_boliviensis_boliviensis
ENSLACG00000001576	-	99	51.498	ENSSHAG00000009307	VARS2	96	51.498	Sarcophilus_harrisii
ENSLACG00000001576	-	100	54.115	ENSSFOG00015016187	vars2	95	54.021	Scleropages_formosus
ENSLACG00000001576	-	97	52.012	ENSSMAG00000020842	vars2	96	51.245	Scophthalmus_maximus
ENSLACG00000001576	-	99	51.187	ENSSDUG00000011598	vars2	96	51.092	Seriola_dumerili
ENSLACG00000001576	-	94	51.316	ENSSLDG00000015492	vars2	95	49.856	Seriola_lalandi_dorsalis
ENSLACG00000001576	-	50	51.053	ENSSARG00000003786	-	58	51.053	Sorex_araneus
ENSLACG00000001576	-	93	54.969	ENSSPUG00000014700	VARS2	95	55.036	Sphenodon_punctatus
ENSLACG00000001576	-	96	49.704	ENSSPAG00000004654	vars2	95	48.757	Stegastes_partitus
ENSLACG00000001576	-	99	52.616	ENSSSCG00000001384	VARS2	95	54.309	Sus_scrofa
ENSLACG00000001576	-	97	51.917	ENSTRUG00000005264	vars2	96	52.004	Takifugu_rubripes
ENSLACG00000001576	-	99	49.616	ENSTNIG00000005916	vars2	95	49.616	Tetraodon_nigroviridis
ENSLACG00000001576	-	87	59.000	ENSTTRG00000012243	VARS2	83	59.000	Tursiops_truncatus
ENSLACG00000001576	-	99	53.346	ENSUAMG00000026124	VARS2	97	54.895	Ursus_americanus
ENSLACG00000001576	-	99	53.592	ENSUMAG00000019894	VARS2	95	53.495	Ursus_maritimus
ENSLACG00000001576	-	99	52.810	ENSVVUG00000010754	VARS2	90	52.713	Vulpes_vulpes
ENSLACG00000001576	-	94	53.415	ENSXETG00000003036	vars2	96	54.189	Xenopus_tropicalis
ENSLACG00000001576	-	94	51.463	ENSXCOG00000003455	vars2	92	51.943	Xiphophorus_couchianus
ENSLACG00000001576	-	96	50.146	ENSXMAG00000013523	vars2	96	49.053	Xiphophorus_maculatus