EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000002110 (Gene tree)
Gene ID: 102360471
Gene Symbol: DDX39B
Alias: BAT1|D6S81E|UAP56
Full Name: DExD-box helicase 39B
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 17428 bases
Position: chrJH130515.1:40271-57698
Accession: 102360471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000002361	DEAD	PF00270.29	2.7e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000002381	DDX39B-201	2324	XM_006013217	ENSLACP00000002361	433 (aa)	-	H2ZY90

Gene Model

Click here to download ENSLACG00000002110's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03013	RNA transport	KEGG
lcm03015	mRNA surveillance pathway	KEGG
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000002110's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000002110	DDX39B	100	83.372	ENSLACG00000015063	DDX39A	100	83.372
ENSLACG00000002110	DDX39B	86	34.400	ENSLACG00000017818	eif4a2	89	34.667
ENSLACG00000002110	DDX39B	94	33.252	ENSLACG00000004638	-	98	33.252
ENSLACG00000002110	DDX39B	93	33.251	ENSLACG00000017153	DDX6	81	33.251
ENSLACG00000002110	DDX39B	77	31.361	ENSLACG00000007753	ddx3xa	50	31.361
ENSLACG00000002110	DDX39B	87	33.511	ENSLACG00000003242	eif4a1a	90	33.867
ENSLACG00000002110	DDX39B	85	34.324	ENSLACG00000000108	EIF4A3	89	34.324
ENSLACG00000002110	DDX39B	86	30.000	ENSLACG00000018608	ddx19	94	30.000
ENSLACG00000002110	DDX39B	81	33.239	ENSLACG00000013814	DDX47	76	33.521
ENSLACG00000002110	DDX39B	89	32.727	ENSLACG00000015214	ddx61	78	32.727

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000002110	DDX39B	100	89.862	ENSG00000198563	DDX39B	95	100.000	Homo_sapiens
ENSLACG00000002110	DDX39B	100	89.631	ENSAMEG00000009508	DDX39B	99	89.631	Ailuropoda_melanoleuca
ENSLACG00000002110	DDX39B	99	85.219	ENSACIG00000004534	ddx39b	98	85.219	Amphilophus_citrinellus
ENSLACG00000002110	DDX39B	100	84.018	ENSATEG00000012366	ddx39b	100	84.018	Anabas_testudineus
ENSLACG00000002110	DDX39B	100	88.736	ENSACAG00000012240	DDX39B	100	88.736	Anolis_carolinensis
ENSLACG00000002110	DDX39B	100	89.862	ENSANAG00000030372	DDX39B	100	89.862	Aotus_nancymaae
ENSLACG00000002110	DDX39B	99	82.955	ENSACLG00000018759	ddx39b	99	82.955	Astatotilapia_calliptera
ENSLACG00000002110	DDX39B	100	83.710	ENSAMXG00000017837	ddx39b	100	83.710	Astyanax_mexicanus
ENSLACG00000002110	DDX39B	100	89.862	ENSBTAG00000014490	DDX39B	100	89.862	Bos_taurus
ENSLACG00000002110	DDX39B	100	89.862	ENSCJAG00000003152	DDX39B	100	89.862	Callithrix_jacchus
ENSLACG00000002110	DDX39B	100	89.862	ENSCAFG00000000509	DDX39B	100	99.355	Canis_familiaris
ENSLACG00000002110	DDX39B	100	89.862	ENSCAFG00020020530	DDX39B	100	89.862	Canis_lupus_dingo
ENSLACG00000002110	DDX39B	100	89.862	ENSCHIG00000004579	DDX39B	100	89.862	Capra_hircus
ENSLACG00000002110	DDX39B	100	76.267	ENSTSYG00000029741	-	94	73.107	Carlito_syrichta
ENSLACG00000002110	DDX39B	100	89.862	ENSTSYG00000010226	-	100	89.862	Carlito_syrichta
ENSLACG00000002110	DDX39B	100	89.631	ENSCAPG00000010066	DDX39B	100	89.631	Cavia_aperea
ENSLACG00000002110	DDX39B	100	89.631	ENSCPOG00000002335	DDX39B	100	89.631	Cavia_porcellus
ENSLACG00000002110	DDX39B	100	89.862	ENSCCAG00000027897	DDX39B	100	89.862	Cebus_capucinus
ENSLACG00000002110	DDX39B	99	80.742	ENSCATG00000043709	DDX39B	99	80.742	Cercocebus_atys
ENSLACG00000002110	DDX39B	100	89.631	ENSCLAG00000014555	DDX39B	100	89.631	Chinchilla_lanigera
ENSLACG00000002110	DDX39B	99	89.559	ENSCSAG00000008517	DDX39B	100	89.559	Chlorocebus_sabaeus
ENSLACG00000002110	DDX39B	63	99.634	ENSCPBG00000014671	-	100	99.634	Chrysemys_picta_bellii
ENSLACG00000002110	DDX39B	100	89.862	ENSCANG00000041217	DDX39B	100	89.862	Colobus_angolensis_palliatus
ENSLACG00000002110	DDX39B	83	74.930	ENSCGRG00001021916	-	88	74.930	Cricetulus_griseus_chok1gshd
ENSLACG00000002110	DDX39B	58	82.470	ENSCGRG00001017315	-	95	79.245	Cricetulus_griseus_chok1gshd
ENSLACG00000002110	DDX39B	58	82.470	ENSCGRG00000012479	-	76	82.470	Cricetulus_griseus_crigri
ENSLACG00000002110	DDX39B	100	83.447	ENSDARG00000036069	ddx39b	100	83.673	Danio_rerio
ENSLACG00000002110	DDX39B	100	89.862	ENSDNOG00000010215	DDX39B	100	89.862	Dasypus_novemcinctus
ENSLACG00000002110	DDX39B	100	82.529	ENSDORG00000004985	Ddx39b	100	88.158	Dipodomys_ordii
ENSLACG00000002110	DDX39B	88	75.526	ENSETEG00000009649	DDX39B	87	75.526	Echinops_telfairi
ENSLACG00000002110	DDX39B	100	89.862	ENSEASG00005017156	DDX39B	100	89.862	Equus_asinus_asinus
ENSLACG00000002110	DDX39B	100	89.862	ENSECAG00000007750	DDX39B	100	89.862	Equus_caballus
ENSLACG00000002110	DDX39B	100	83.982	ENSELUG00000017904	ddx39b	100	83.982	Esox_lucius
ENSLACG00000002110	DDX39B	100	89.631	ENSFCAG00000004497	DDX39B	100	89.631	Felis_catus
ENSLACG00000002110	DDX39B	100	89.631	ENSFDAG00000011074	DDX39B	100	89.631	Fukomys_damarensis
ENSLACG00000002110	DDX39B	76	96.073	ENSGAGG00000001300	-	82	96.073	Gopherus_agassizii
ENSLACG00000002110	DDX39B	100	89.862	ENSGGOG00000005989	DDX39B	100	89.862	Gorilla_gorilla
ENSLACG00000002110	DDX39B	100	89.171	ENSHGLG00000019248	DDX39B	100	89.171	Heterocephalus_glaber_female
ENSLACG00000002110	DDX39B	100	89.171	ENSHGLG00100011850	DDX39B	100	89.171	Heterocephalus_glaber_male
ENSLACG00000002110	DDX39B	100	83.484	ENSIPUG00000015733	DDX39B	94	83.484	Ictalurus_punctatus
ENSLACG00000002110	DDX39B	100	89.401	ENSSTOG00000012838	DDX39B	100	89.401	Ictidomys_tridecemlineatus
ENSLACG00000002110	DDX39B	100	89.401	ENSJJAG00000005660	-	100	89.401	Jaculus_jaculus
ENSLACG00000002110	DDX39B	66	68.293	ENSLBEG00000017177	-	81	68.293	Labrus_bergylta
ENSLACG00000002110	DDX39B	99	70.629	ENSLBEG00000012254	ddx39b	99	70.629	Labrus_bergylta
ENSLACG00000002110	DDX39B	100	89.631	ENSLAFG00000014202	DDX39B	100	89.631	Loxodonta_africana
ENSLACG00000002110	DDX39B	100	89.862	ENSMFAG00000034233	DDX39B	100	89.862	Macaca_fascicularis
ENSLACG00000002110	DDX39B	100	89.862	ENSMMUG00000008839	DDX39B	100	89.862	Macaca_mulatta
ENSLACG00000002110	DDX39B	100	89.862	ENSMNEG00000041059	DDX39B	100	89.862	Macaca_nemestrina
ENSLACG00000002110	DDX39B	100	89.862	ENSMLEG00000043791	DDX39B	100	89.862	Mandrillus_leucophaeus
ENSLACG00000002110	DDX39B	99	82.955	ENSMZEG00005017654	ddx39b	99	82.955	Maylandia_zebra
ENSLACG00000002110	DDX39B	100	89.631	ENSMAUG00000008059	Ddx39b	100	89.631	Mesocricetus_auratus
ENSLACG00000002110	DDX39B	100	89.862	ENSMICG00000017349	DDX39B	100	89.862	Microcebus_murinus
ENSLACG00000002110	DDX39B	100	89.862	ENSMOCG00000011169	Ddx39b	100	89.862	Microtus_ochrogaster
ENSLACG00000002110	DDX39B	88	88.220	ENSMODG00000015791	DDX39B	88	88.220	Monodelphis_domestica
ENSLACG00000002110	DDX39B	100	89.631	ENSMUSG00000019432	Ddx39b	100	89.631	Mus_musculus
ENSLACG00000002110	DDX39B	100	89.631	MGP_PahariEiJ_G0020513	Ddx39b	100	89.631	Mus_pahari
ENSLACG00000002110	DDX39B	100	89.631	MGP_SPRETEiJ_G0022424	Ddx39b	100	89.631	Mus_spretus
ENSLACG00000002110	DDX39B	100	89.631	ENSMPUG00000011407	DDX39B	100	89.631	Mustela_putorius_furo
ENSLACG00000002110	DDX39B	72	99.357	ENSMLUG00000001681	DDX39B	100	99.357	Myotis_lucifugus
ENSLACG00000002110	DDX39B	100	89.862	ENSNGAG00000022948	Ddx39b	100	89.862	Nannospalax_galili
ENSLACG00000002110	DDX39B	82	99.298	ENSNLEG00000006094	DDX39B	100	99.298	Nomascus_leucogenys
ENSLACG00000002110	DDX39B	86	100.000	ENSMEUG00000008264	DDX39B	86	100.000	Notamacropus_eugenii
ENSLACG00000002110	DDX39B	100	89.631	ENSOPRG00000011923	DDX39B	100	89.631	Ochotona_princeps
ENSLACG00000002110	DDX39B	100	89.401	ENSODEG00000018083	DDX39B	100	89.401	Octodon_degus
ENSLACG00000002110	DDX39B	100	83.790	ENSONIG00000004740	ddx39b	100	83.790	Oreochromis_niloticus
ENSLACG00000002110	DDX39B	56	81.070	ENSOANG00000008361	DDX39B	95	81.070	Ornithorhynchus_anatinus
ENSLACG00000002110	DDX39B	100	86.742	ENSOCUG00000024126	DDX39B	100	86.742	Oryctolagus_cuniculus
ENSLACG00000002110	DDX39B	100	88.736	ENSOGAG00000028850	-	100	88.736	Otolemur_garnettii
ENSLACG00000002110	DDX39B	73	97.452	ENSOGAG00000009067	-	97	97.452	Otolemur_garnettii
ENSLACG00000002110	DDX39B	100	89.862	ENSOARG00000008787	DDX39B	98	89.862	Ovis_aries
ENSLACG00000002110	DDX39B	100	89.862	ENSPPAG00000043072	DDX39B	100	89.862	Pan_paniscus
ENSLACG00000002110	DDX39B	100	89.631	ENSPPRG00000001913	DDX39B	100	89.631	Panthera_pardus
ENSLACG00000002110	DDX39B	100	88.710	ENSPTIG00000017669	DDX39B	100	88.710	Panthera_tigris_altaica
ENSLACG00000002110	DDX39B	100	89.862	ENSPTRG00000032509	DDX39B	100	89.862	Pan_troglodytes
ENSLACG00000002110	DDX39B	100	89.862	ENSPANG00000018609	DDX39B	100	89.862	Papio_anubis
ENSLACG00000002110	DDX39B	100	82.167	ENSPKIG00000011324	ddx39b	100	82.844	Paramormyrops_kingsleyae
ENSLACG00000002110	DDX39B	100	89.631	ENSPEMG00000016905	Ddx39b	100	89.631	Peromyscus_maniculatus_bairdii
ENSLACG00000002110	DDX39B	100	89.862	ENSPCIG00000017572	DDX39B	100	89.862	Phascolarctos_cinereus
ENSLACG00000002110	DDX39B	100	89.862	ENSPPYG00000016433	DDX39B	100	89.862	Pongo_abelii
ENSLACG00000002110	DDX39B	66	99.296	ENSPCAG00000003484	DDX39B	100	99.296	Procavia_capensis
ENSLACG00000002110	DDX39B	100	89.862	ENSPCOG00000018656	DDX39B	100	89.862	Propithecus_coquereli
ENSLACG00000002110	DDX39B	100	89.631	ENSPVAG00000004653	DDX39B	100	89.631	Pteropus_vampyrus
ENSLACG00000002110	DDX39B	99	75.289	ENSPNYG00000010382	ddx39b	98	75.289	Pundamilia_nyererei
ENSLACG00000002110	DDX39B	100	83.484	ENSPNAG00000026926	ddx39b	100	83.484	Pygocentrus_nattereri
ENSLACG00000002110	DDX39B	100	89.631	ENSRNOG00000000841	Ddx39b	100	89.631	Rattus_norvegicus
ENSLACG00000002110	DDX39B	100	79.724	ENSRBIG00000031309	DDX39B	100	79.724	Rhinopithecus_bieti
ENSLACG00000002110	DDX39B	100	89.862	ENSRROG00000039517	DDX39B	100	89.862	Rhinopithecus_roxellana
ENSLACG00000002110	DDX39B	100	79.724	ENSSBOG00000035513	-	100	79.724	Saimiri_boliviensis_boliviensis
ENSLACG00000002110	DDX39B	100	89.862	ENSSHAG00000003209	DDX39B	100	89.862	Sarcophilus_harrisii
ENSLACG00000002110	DDX39B	100	83.070	ENSSFOG00015016107	ddx39b	100	83.521	Scleropages_formosus
ENSLACG00000002110	DDX39B	100	84.703	ENSSDUG00000011557	ddx39b	100	84.703	Seriola_dumerili
ENSLACG00000002110	DDX39B	100	84.475	ENSSLDG00000015763	ddx39b	100	84.475	Seriola_lalandi_dorsalis
ENSLACG00000002110	DDX39B	88	76.579	ENSSARG00000005245	DDX39B	100	76.579	Sorex_araneus
ENSLACG00000002110	DDX39B	100	89.401	ENSSPUG00000012805	DDX39B	100	89.401	Sphenodon_punctatus
ENSLACG00000002110	DDX39B	100	89.862	ENSSSCG00000001400	DDX39B	100	92.000	Sus_scrofa
ENSLACG00000002110	DDX39B	100	67.281	ENSTBEG00000003721	DDX39B	100	67.281	Tupaia_belangeri
ENSLACG00000002110	DDX39B	100	81.549	ENSTTRG00000014074	DDX39B	100	81.549	Tursiops_truncatus
ENSLACG00000002110	DDX39B	100	77.064	ENSUAMG00000027335	DDX39B	100	77.064	Ursus_americanus
ENSLACG00000002110	DDX39B	100	80.876	ENSUMAG00000015124	DDX39B	100	80.876	Ursus_maritimus
ENSLACG00000002110	DDX39B	60	69.333	ENSVPAG00000009167	-	72	69.333	Vicugna_pacos
ENSLACG00000002110	DDX39B	100	89.862	ENSVVUG00000019518	DDX39B	99	89.862	Vulpes_vulpes
ENSLACG00000002110	DDX39B	100	76.376	ENSXETG00000002498	ddx39b	99	76.376	Xenopus_tropicalis