EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000002665 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 2507 bases
Position: chrJH128386.1:55817-58323
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000002979	RVT_1	PF00078.27	3.8e-27	1	1
ENSLACP00000002979	RNase_H	PF00075.24	1.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000003005	-	2406	-	ENSLACP00000002979	802 (aa)	-	H3A008

Gene Model

Click here to download ENSLACG00000002665's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000002665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000002665	-	78	38.224	ENSLACG00000008366	-	98	38.189
ENSLACG00000002665	-	58	42.049	ENSLACG00000004343	-	64	42.086
ENSLACG00000002665	-	58	31.606	ENSLACG00000016441	-	64	31.606
ENSLACG00000002665	-	66	70.992	ENSLACG00000002512	-	99	70.992
ENSLACG00000002665	-	57	32.014	ENSLACG00000006413	-	67	32.130
ENSLACG00000002665	-	56	45.038	ENSLACG00000009011	-	64	44.574
ENSLACG00000002665	-	65	38.542	ENSLACG00000015558	-	71	38.542
ENSLACG00000002665	-	80	38.679	ENSLACG00000018380	-	97	38.339
ENSLACG00000002665	-	63	31.771	ENSLACG00000003991	-	58	31.771
ENSLACG00000002665	-	60	31.771	ENSLACG00000007830	-	62	31.771
ENSLACG00000002665	-	60	30.526	ENSLACG00000009524	-	56	30.526
ENSLACG00000002665	-	78	67.954	ENSLACG00000011272	-	93	67.954
ENSLACG00000002665	-	74	41.388	ENSLACG00000005007	-	74	52.000
ENSLACG00000002665	-	53	32.292	ENSLACG00000010367	-	57	32.292

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000002665	-	52	32.759	ENSACLG00000024556	-	51	34.361	Astatotilapia_calliptera
ENSLACG00000002665	-	66	36.269	ENSACLG00000019989	-	55	36.269	Astatotilapia_calliptera
ENSLACG00000002665	-	52	32.245	ENSAMXG00000041896	-	61	32.245	Astyanax_mexicanus
ENSLACG00000002665	-	55	31.250	ENSAMXG00000033197	-	62	31.250	Astyanax_mexicanus
ENSLACG00000002665	-	71	31.481	ENSAMXG00000037864	-	52	31.790	Astyanax_mexicanus
ENSLACG00000002665	-	61	31.102	ENSCING00000021231	-	69	31.933	Ciona_intestinalis
ENSLACG00000002665	-	62	32.911	ENSCVAG00000020907	-	69	33.016	Cyprinodon_variegatus
ENSLACG00000002665	-	77	33.835	ENSLOCG00000009957	-	72	34.568	Lepisosteus_oculatus
ENSLACG00000002665	-	55	33.068	ENSMAMG00000021634	-	64	33.750	Mastacembelus_armatus
ENSLACG00000002665	-	57	34.495	ENSMZEG00005024252	-	53	34.164	Maylandia_zebra
ENSLACG00000002665	-	60	31.771	ENSORLG00000028879	-	51	31.771	Oryzias_latipes
ENSLACG00000002665	-	59	34.495	ENSORLG00020016695	-	63	35.145	Oryzias_latipes_hni
ENSLACG00000002665	-	60	31.250	ENSORLG00020000592	-	56	31.250	Oryzias_latipes_hni
ENSLACG00000002665	-	63	33.856	ENSORLG00015008388	-	52	34.426	Oryzias_latipes_hsok
ENSLACG00000002665	-	56	30.208	ENSORLG00015000379	-	62	30.208	Oryzias_latipes_hsok
ENSLACG00000002665	-	60	31.879	ENSORLG00015022127	-	58	32.400	Oryzias_latipes_hsok
ENSLACG00000002665	-	59	31.544	ENSOMEG00000012600	-	57	31.507	Oryzias_melastigma
ENSLACG00000002665	-	57	31.325	ENSPKIG00000006120	-	50	31.308	Paramormyrops_kingsleyae
ENSLACG00000002665	-	58	35.438	ENSPSIG00000001136	-	62	40.199	Pelodiscus_sinensis
ENSLACG00000002665	-	60	30.903	ENSPREG00000006122	-	62	32.491	Poecilia_reticulata
ENSLACG00000002665	-	63	33.022	ENSSDUG00000010009	-	50	33.121	Seriola_dumerili
ENSLACG00000002665	-	50	33.051	ENSTRUG00000021236	-	63	33.051	Takifugu_rubripes