EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000002825 (Gene tree)
Gene ID: -
Gene Symbol: SRL
Alias: SAR
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 108433 bases
Position: chrJH126634.1:60543-168975
Accession: 102362569
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000003159	MMR_HSR1	PF01926.23	7.6e-09	1	1
ENSLACP00000003158	MMR_HSR1	PF01926.23	7.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000003188	SRL-201	5952	XM_005990657	ENSLACP00000003158	483 (aa)	XP_005990719	H3A0I7
ENSLACT00000003189	SRL-202	1359	XM_005990658	ENSLACP00000003159	452 (aa)	XP_005990720	H3A0I8

Gene Model

Click here to download ENSLACG00000002825's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000002825's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000002825	SRL	61	38.489	ENSLACG00000018332	ehd2a	60	38.966
ENSLACG00000002825	SRL	66	35.667	ENSLACG00000017804	EHD4	50	35.667
ENSLACG00000002825	SRL	64	37.113	ENSLACG00000018148	EHD1	54	37.113

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000002825	SRL	100	85.430	ENSG00000185739	SRL	99	86.977	Homo_sapiens
ENSLACG00000002825	SRL	100	84.292	ENSAPOG00000018093	srl	99	85.261	Acanthochromis_polyacanthus
ENSLACG00000002825	SRL	98	75.566	ENSAPOG00000012432	SRL	98	75.566	Acanthochromis_polyacanthus
ENSLACG00000002825	SRL	100	86.313	ENSAMEG00000010862	SRL	51	86.313	Ailuropoda_melanoleuca
ENSLACG00000002825	SRL	99	73.884	ENSACIG00000015419	SRL	99	73.884	Amphilophus_citrinellus
ENSLACG00000002825	SRL	100	84.513	ENSACIG00000015799	srl	100	84.513	Amphilophus_citrinellus
ENSLACG00000002825	SRL	98	75.281	ENSAOCG00000017049	SRL	97	75.281	Amphiprion_ocellaris
ENSLACG00000002825	SRL	96	85.450	ENSAOCG00000007574	srl	99	85.450	Amphiprion_ocellaris
ENSLACG00000002825	SRL	100	84.071	ENSAPEG00000006911	srl	100	82.851	Amphiprion_percula
ENSLACG00000002825	SRL	98	70.721	ENSAPEG00000006533	SRL	97	71.685	Amphiprion_percula
ENSLACG00000002825	SRL	98	85.294	ENSATEG00000024315	srl	100	82.609	Anabas_testudineus
ENSLACG00000002825	SRL	98	72.210	ENSATEG00000009643	SRL	53	72.867	Anabas_testudineus
ENSLACG00000002825	SRL	100	83.607	ENSACAG00000016380	SRL	89	84.631	Anolis_carolinensis
ENSLACG00000002825	SRL	98	72.967	ENSACLG00000024674	SRL	57	73.407	Astatotilapia_calliptera
ENSLACG00000002825	SRL	100	83.850	ENSACLG00000027685	srl	100	82.609	Astatotilapia_calliptera
ENSLACG00000002825	SRL	93	76.134	ENSAMXG00000038693	SRL	100	71.648	Astyanax_mexicanus
ENSLACG00000002825	SRL	100	83.023	ENSAMXG00000018789	srl	92	83.023	Astyanax_mexicanus
ENSLACG00000002825	SRL	99	85.177	ENSBTAG00000001078	SRL	57	85.177	Bos_taurus
ENSLACG00000002825	SRL	98	85.779	ENSCJAG00000019750	SRL	96	84.989	Callithrix_jacchus
ENSLACG00000002825	SRL	100	85.872	ENSCAFG00000019233	SRL	84	85.872	Canis_familiaris
ENSLACG00000002825	SRL	100	85.872	ENSCAFG00020025024	SRL	56	85.872	Canis_lupus_dingo
ENSLACG00000002825	SRL	99	85.177	ENSCHIG00000017927	SRL	56	85.177	Capra_hircus
ENSLACG00000002825	SRL	100	85.651	ENSTSYG00000007919	SRL	99	86.744	Carlito_syrichta
ENSLACG00000002825	SRL	99	85.619	ENSCPOG00000012643	SRL	96	85.619	Cavia_porcellus
ENSLACG00000002825	SRL	98	81.038	ENSCCAG00000032646	SRL	100	87.599	Cebus_capucinus
ENSLACG00000002825	SRL	100	85.430	ENSCATG00000032227	-	96	85.430	Cercocebus_atys
ENSLACG00000002825	SRL	99	85.841	ENSCLAG00000016242	SRL	96	85.841	Chinchilla_lanigera
ENSLACG00000002825	SRL	85	88.831	ENSCHOG00000001618	SRL	52	88.831	Choloepus_hoffmanni
ENSLACG00000002825	SRL	99	91.451	ENSCPBG00000026371	SRL	99	86.128	Chrysemys_picta_bellii
ENSLACG00000002825	SRL	92	60.817	ENSCING00000005231	-	93	60.671	Ciona_intestinalis
ENSLACG00000002825	SRL	100	85.430	ENSCANG00000035872	SRL	99	86.977	Colobus_angolensis_palliatus
ENSLACG00000002825	SRL	100	85.872	ENSCGRG00001016630	Srl	96	85.841	Cricetulus_griseus_chok1gshd
ENSLACG00000002825	SRL	100	85.872	ENSCGRG00000005458	Srl	96	85.841	Cricetulus_griseus_crigri
ENSLACG00000002825	SRL	100	84.735	ENSCSEG00000016151	srl	100	83.023	Cynoglossus_semilaevis
ENSLACG00000002825	SRL	100	71.744	ENSCSEG00000011866	SRL	91	71.965	Cynoglossus_semilaevis
ENSLACG00000002825	SRL	100	84.292	ENSCVAG00000003513	srl	100	82.816	Cyprinodon_variegatus
ENSLACG00000002825	SRL	98	74.115	ENSCVAG00000022465	SRL	60	74.115	Cyprinodon_variegatus
ENSLACG00000002825	SRL	99	84.922	ENSDARG00000104587	srl	100	83.644	Danio_rerio
ENSLACG00000002825	SRL	84	75.521	ENSDARG00000112959	CABZ01072309.1	100	75.521	Danio_rerio
ENSLACG00000002825	SRL	99	85.588	ENSDNOG00000011643	SRL	54	85.651	Dasypus_novemcinctus
ENSLACG00000002825	SRL	99	85.841	ENSDORG00000014807	Srl	96	85.841	Dipodomys_ordii
ENSLACG00000002825	SRL	82	66.845	ENSEBUG00000015937	srl	94	66.845	Eptatretus_burgeri
ENSLACG00000002825	SRL	99	86.000	ENSEASG00005000942	SRL	54	86.062	Equus_asinus_asinus
ENSLACG00000002825	SRL	99	86.062	ENSECAG00000024219	SRL	96	86.062	Equus_caballus
ENSLACG00000002825	SRL	100	81.314	ENSELUG00000015616	srl	100	81.314	Esox_lucius
ENSLACG00000002825	SRL	98	86.456	ENSFCAG00000022075	SRL	96	86.093	Felis_catus
ENSLACG00000002825	SRL	99	85.366	ENSFALG00000004328	SRL	64	85.366	Ficedula_albicollis
ENSLACG00000002825	SRL	99	85.841	ENSFDAG00000006199	SRL	96	85.841	Fukomys_damarensis
ENSLACG00000002825	SRL	99	72.991	ENSFHEG00000011854	SRL	99	73.051	Fundulus_heteroclitus
ENSLACG00000002825	SRL	100	84.071	ENSFHEG00000011239	srl	100	82.609	Fundulus_heteroclitus
ENSLACG00000002825	SRL	98	81.015	ENSGMOG00000014954	srl	99	82.561	Gadus_morhua
ENSLACG00000002825	SRL	99	86.475	ENSGALG00000038884	SRL	96	86.475	Gallus_gallus
ENSLACG00000002825	SRL	98	74.887	ENSGAFG00000016984	SRL	98	74.887	Gambusia_affinis
ENSLACG00000002825	SRL	100	84.071	ENSGAFG00000000010	srl	100	82.816	Gambusia_affinis
ENSLACG00000002825	SRL	98	82.561	ENSGACG00000011332	srl	99	84.327	Gasterosteus_aculeatus
ENSLACG00000002825	SRL	100	85.430	ENSGGOG00000011312	-	96	85.430	Gorilla_gorilla
ENSLACG00000002825	SRL	98	73.187	ENSHBUG00000015710	SRL	57	73.626	Haplochromis_burtoni
ENSLACG00000002825	SRL	100	83.850	ENSHBUG00000007581	srl	100	82.609	Haplochromis_burtoni
ENSLACG00000002825	SRL	99	86.062	ENSHGLG00000015271	SRL	96	86.062	Heterocephalus_glaber_female
ENSLACG00000002825	SRL	99	86.062	ENSHGLG00100019378	SRL	96	86.062	Heterocephalus_glaber_male
ENSLACG00000002825	SRL	98	71.366	ENSHCOG00000001012	SRL	50	71.366	Hippocampus_comes
ENSLACG00000002825	SRL	100	82.965	ENSHCOG00000008687	srl	98	83.937	Hippocampus_comes
ENSLACG00000002825	SRL	96	69.037	ENSIPUG00000011609	SRL	95	69.037	Ictalurus_punctatus
ENSLACG00000002825	SRL	99	83.296	ENSIPUG00000012513	srl	100	81.781	Ictalurus_punctatus
ENSLACG00000002825	SRL	100	85.430	ENSSTOG00000021151	-	96	85.398	Ictidomys_tridecemlineatus
ENSLACG00000002825	SRL	99	86.283	ENSJJAG00000016400	Srl	96	86.283	Jaculus_jaculus
ENSLACG00000002825	SRL	98	75.737	ENSKMAG00000019537	SRL	100	75.737	Kryptolebias_marmoratus
ENSLACG00000002825	SRL	98	84.127	ENSKMAG00000014115	srl	93	86.461	Kryptolebias_marmoratus
ENSLACG00000002825	SRL	98	73.708	ENSLBEG00000013811	SRL	96	73.708	Labrus_bergylta
ENSLACG00000002825	SRL	99	82.927	ENSLBEG00000026643	srl	100	80.331	Labrus_bergylta
ENSLACG00000002825	SRL	100	84.956	ENSLOCG00000002644	srl	96	84.956	Lepisosteus_oculatus
ENSLACG00000002825	SRL	100	85.651	ENSLAFG00000006329	SRL	52	85.651	Loxodonta_africana
ENSLACG00000002825	SRL	95	86.977	ENSMFAG00000037383	SRL	99	86.977	Macaca_fascicularis
ENSLACG00000002825	SRL	100	85.210	ENSMNEG00000019236	-	96	85.210	Macaca_nemestrina
ENSLACG00000002825	SRL	100	78.808	ENSMLEG00000032156	SRL	98	75.941	Mandrillus_leucophaeus
ENSLACG00000002825	SRL	98	73.085	ENSMAMG00000013756	SRL	53	73.523	Mastacembelus_armatus
ENSLACG00000002825	SRL	98	85.520	ENSMAMG00000023322	srl	94	85.520	Mastacembelus_armatus
ENSLACG00000002825	SRL	98	73.187	ENSMZEG00005004010	SRL	57	73.626	Maylandia_zebra
ENSLACG00000002825	SRL	100	83.850	ENSMZEG00005004548	srl	100	82.609	Maylandia_zebra
ENSLACG00000002825	SRL	99	86.253	ENSMGAG00000009342	SRL	95	87.500	Meleagris_gallopavo
ENSLACG00000002825	SRL	100	85.651	ENSMICG00000032307	SRL	96	85.651	Microcebus_murinus
ENSLACG00000002825	SRL	99	85.619	ENSMOCG00000008208	Srl	96	85.619	Microtus_ochrogaster
ENSLACG00000002825	SRL	98	71.895	ENSMMOG00000021572	SRL	100	71.895	Mola_mola
ENSLACG00000002825	SRL	99	83.964	ENSMMOG00000013970	srl	99	83.964	Mola_mola
ENSLACG00000002825	SRL	99	85.588	ENSMODG00000016380	-	51	85.588	Monodelphis_domestica
ENSLACG00000002825	SRL	93	76.372	ENSMALG00000000670	SRL	98	76.372	Monopterus_albus
ENSLACG00000002825	SRL	99	84.187	ENSMALG00000005039	srl	98	84.910	Monopterus_albus
ENSLACG00000002825	SRL	100	86.755	MGP_CAROLIEiJ_G0020400	Srl	96	86.726	Mus_caroli
ENSLACG00000002825	SRL	100	86.755	ENSMUSG00000022519	Srl	96	86.726	Mus_musculus
ENSLACG00000002825	SRL	98	87.133	MGP_PahariEiJ_G0016108	Srl	50	83.404	Mus_pahari
ENSLACG00000002825	SRL	100	86.755	MGP_SPRETEiJ_G0021294	Srl	96	86.726	Mus_spretus
ENSLACG00000002825	SRL	100	85.651	ENSMPUG00000015025	SRL	55	85.651	Mustela_putorius_furo
ENSLACG00000002825	SRL	100	86.093	ENSMLUG00000030733	SRL	57	86.093	Myotis_lucifugus
ENSLACG00000002825	SRL	99	86.283	ENSNGAG00000019741	Srl	96	86.283	Nannospalax_galili
ENSLACG00000002825	SRL	98	73.187	ENSNBRG00000002422	SRL	57	73.923	Neolamprologus_brichardi
ENSLACG00000002825	SRL	100	84.071	ENSNBRG00000023775	srl	100	80.745	Neolamprologus_brichardi
ENSLACG00000002825	SRL	98	80.674	ENSNLEG00000029051	SRL	98	76.987	Nomascus_leucogenys
ENSLACG00000002825	SRL	100	80.574	ENSOPRG00000000477	-	53	80.574	Ochotona_princeps
ENSLACG00000002825	SRL	98	85.843	ENSODEG00000013256	SRL	100	80.579	Octodon_degus
ENSLACG00000002825	SRL	100	84.071	ENSONIG00000005192	srl	100	83.023	Oreochromis_niloticus
ENSLACG00000002825	SRL	100	85.651	ENSOCUG00000025140	SRL	50	85.651	Oryctolagus_cuniculus
ENSLACG00000002825	SRL	99	72.931	ENSORLG00000015064	SRL	98	72.931	Oryzias_latipes
ENSLACG00000002825	SRL	98	84.389	ENSORLG00000008291	srl	93	86.260	Oryzias_latipes
ENSLACG00000002825	SRL	98	84.163	ENSORLG00020019784	srl	85	81.573	Oryzias_latipes_hni
ENSLACG00000002825	SRL	99	73.154	ENSORLG00020018173	SRL	98	73.154	Oryzias_latipes_hni
ENSLACG00000002825	SRL	98	83.710	ENSORLG00015009342	srl	97	81.159	Oryzias_latipes_hsok
ENSLACG00000002825	SRL	99	73.154	ENSORLG00015019063	SRL	98	73.154	Oryzias_latipes_hsok
ENSLACG00000002825	SRL	98	71.586	ENSOMEG00000005682	SRL	53	71.648	Oryzias_melastigma
ENSLACG00000002825	SRL	98	83.937	ENSOMEG00000010006	srl	98	84.091	Oryzias_melastigma
ENSLACG00000002825	SRL	100	85.430	ENSOGAG00000029266	SRL	55	85.430	Otolemur_garnettii
ENSLACG00000002825	SRL	99	85.177	ENSOARG00000003074	SRL	57	85.177	Ovis_aries
ENSLACG00000002825	SRL	100	85.430	ENSPPAG00000024919	-	99	86.977	Pan_paniscus
ENSLACG00000002825	SRL	98	86.682	ENSPPRG00000010274	SRL	99	87.209	Panthera_pardus
ENSLACG00000002825	SRL	98	86.682	ENSPTIG00000015162	SRL	99	87.209	Panthera_tigris_altaica
ENSLACG00000002825	SRL	100	85.430	ENSPTRG00000007712	SRL	99	86.977	Pan_troglodytes
ENSLACG00000002825	SRL	100	85.430	ENSPANG00000013804	SRL	97	85.430	Papio_anubis
ENSLACG00000002825	SRL	100	83.850	ENSPKIG00000006405	srl	100	82.887	Paramormyrops_kingsleyae
ENSLACG00000002825	SRL	100	74.336	ENSPKIG00000024974	SRL	94	71.843	Paramormyrops_kingsleyae
ENSLACG00000002825	SRL	99	86.918	ENSPSIG00000008586	SRL	50	86.918	Pelodiscus_sinensis
ENSLACG00000002825	SRL	99	84.922	ENSPMGG00000021081	srl	97	84.922	Periophthalmus_magnuspinnatus
ENSLACG00000002825	SRL	98	73.923	ENSPMGG00000023505	-	99	73.923	Periophthalmus_magnuspinnatus
ENSLACG00000002825	SRL	99	86.283	ENSPEMG00000015842	Srl	96	86.283	Peromyscus_maniculatus_bairdii
ENSLACG00000002825	SRL	93	67.202	ENSPMAG00000004786	srl	99	67.963	Petromyzon_marinus
ENSLACG00000002825	SRL	99	85.809	ENSPCIG00000012128	SRL	99	85.809	Phascolarctos_cinereus
ENSLACG00000002825	SRL	100	82.609	ENSPFOG00000011408	srl	98	82.255	Poecilia_formosa
ENSLACG00000002825	SRL	98	73.077	ENSPLAG00000002932	SRL	98	73.077	Poecilia_latipinna
ENSLACG00000002825	SRL	100	83.850	ENSPLAG00000008017	srl	98	83.850	Poecilia_latipinna
ENSLACG00000002825	SRL	98	71.648	ENSPMEG00000005890	SRL	59	71.648	Poecilia_mexicana
ENSLACG00000002825	SRL	100	83.850	ENSPMEG00000006745	srl	98	83.850	Poecilia_mexicana
ENSLACG00000002825	SRL	99	73.051	ENSPREG00000000315	SRL	100	73.051	Poecilia_reticulata
ENSLACG00000002825	SRL	100	83.850	ENSPREG00000007751	srl	99	83.814	Poecilia_reticulata
ENSLACG00000002825	SRL	93	87.351	ENSPPYG00000007053	SRL	98	87.351	Pongo_abelii
ENSLACG00000002825	SRL	99	85.398	ENSPCAG00000003378	-	51	85.398	Procavia_capensis
ENSLACG00000002825	SRL	100	85.651	ENSPCOG00000023135	SRL	99	86.977	Propithecus_coquereli
ENSLACG00000002825	SRL	100	85.651	ENSPVAG00000006586	SRL	56	85.651	Pteropus_vampyrus
ENSLACG00000002825	SRL	100	83.850	ENSPNYG00000001200	srl	100	82.609	Pundamilia_nyererei
ENSLACG00000002825	SRL	98	73.187	ENSPNYG00000003423	SRL	57	73.626	Pundamilia_nyererei
ENSLACG00000002825	SRL	100	82.195	ENSPNAG00000023106	srl	100	82.195	Pygocentrus_nattereri
ENSLACG00000002825	SRL	98	74.157	ENSPNAG00000007361	-	91	74.157	Pygocentrus_nattereri
ENSLACG00000002825	SRL	100	86.976	ENSRNOG00000005269	Srl	50	86.976	Rattus_norvegicus
ENSLACG00000002825	SRL	100	85.430	ENSRBIG00000042358	SRL	50	85.430	Rhinopithecus_bieti
ENSLACG00000002825	SRL	98	85.779	ENSSBOG00000029273	SRL	96	84.989	Saimiri_boliviensis_boliviensis
ENSLACG00000002825	SRL	99	85.588	ENSSHAG00000011715	-	51	85.556	Sarcophilus_harrisii
ENSLACG00000002825	SRL	98	85.294	ENSSFOG00015009773	srl	100	83.058	Scleropages_formosus
ENSLACG00000002825	SRL	98	72.308	ENSSMAG00000002232	SRL	50	72.747	Scophthalmus_maximus
ENSLACG00000002825	SRL	100	83.186	ENSSMAG00000016274	srl	100	81.573	Scophthalmus_maximus
ENSLACG00000002825	SRL	98	85.068	ENSSDUG00000010808	srl	97	85.068	Seriola_dumerili
ENSLACG00000002825	SRL	98	74.501	ENSSDUG00000009161	SRL	99	74.501	Seriola_dumerili
ENSLACG00000002825	SRL	98	74.505	ENSSLDG00000014601	SRL	99	74.505	Seriola_lalandi_dorsalis
ENSLACG00000002825	SRL	99	84.187	ENSSLDG00000022024	srl	100	82.402	Seriola_lalandi_dorsalis
ENSLACG00000002825	SRL	100	86.534	ENSSPUG00000016859	SRL	99	86.534	Sphenodon_punctatus
ENSLACG00000002825	SRL	100	84.071	ENSSPAG00000019105	srl	100	82.851	Stegastes_partitus
ENSLACG00000002825	SRL	98	74.550	ENSSPAG00000014254	SRL	99	74.550	Stegastes_partitus
ENSLACG00000002825	SRL	99	85.177	ENSSSCG00000007949	SRL	99	85.586	Sus_scrofa
ENSLACG00000002825	SRL	80	88.950	ENSTGUG00000016121	-	100	88.950	Taeniopygia_guttata
ENSLACG00000002825	SRL	99	85.588	ENSTGUG00000003951	-	99	85.588	Taeniopygia_guttata
ENSLACG00000002825	SRL	98	85.973	ENSTRUG00000006005	srl	100	82.816	Takifugu_rubripes
ENSLACG00000002825	SRL	93	76.134	ENSTRUG00000013310	SRL	55	75.952	Takifugu_rubripes
ENSLACG00000002825	SRL	98	85.520	ENSTNIG00000009739	srl	100	80.331	Tetraodon_nigroviridis
ENSLACG00000002825	SRL	100	86.093	ENSUAMG00000005701	SRL	56	86.093	Ursus_americanus
ENSLACG00000002825	SRL	100	86.093	ENSUMAG00000002574	SRL	56	86.093	Ursus_maritimus
ENSLACG00000002825	SRL	100	85.872	ENSVVUG00000016331	-	50	85.872	Vulpes_vulpes
ENSLACG00000002825	SRL	100	85.177	ENSXETG00000017313	srl	100	85.366	Xenopus_tropicalis
ENSLACG00000002825	SRL	98	74.208	ENSXCOG00000014584	SRL	98	74.208	Xiphophorus_couchianus
ENSLACG00000002825	SRL	93	85.748	ENSXCOG00000010424	srl	97	85.748	Xiphophorus_couchianus
ENSLACG00000002825	SRL	98	72.088	ENSXMAG00000027598	SRL	62	72.308	Xiphophorus_maculatus
ENSLACG00000002825	SRL	99	83.814	ENSXMAG00000004625	srl	95	82.402	Xiphophorus_maculatus