EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000003276 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 148887 bases
Position: chrJH128089.1:76697-225583
Accession: 102360517
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000003681	EST1_DNA_bind	PF10373.9	2e-11	1	1
ENSLACP00000003682	PIN_4	PF13638.6	2.3e-23	1	1
ENSLACP00000003681	PIN_4	PF13638.6	1.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000003715	SMG6-202	627	-	ENSLACP00000003682	208 (aa)	-	H3A211
ENSLACT00000003714	SMG6-201	1398	XM_006007420	ENSLACP00000003681	465 (aa)	XP_006007482	H3A210

Gene Model

Click here to download ENSLACG00000003276's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000003276's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000003276	SMG6	100	80.000	ENSG00000070366	SMG6	100	76.087	Homo_sapiens
ENSLACG00000003276	SMG6	67	77.465	ENSACAG00000027623	-	100	77.083	Anolis_carolinensis
ENSLACG00000003276	SMG6	100	80.000	ENSTSYG00000003406	SMG6	91	80.000	Carlito_syrichta
ENSLACG00000003276	SMG6	100	80.000	ENSCPOG00000014878	SMG6	95	79.911	Cavia_porcellus
ENSLACG00000003276	SMG6	100	79.785	ENSCLAG00000006748	SMG6	94	80.357	Chinchilla_lanigera
ENSLACG00000003276	SMG6	91	42.857	ENSCING00000010099	-	81	38.686	Ciona_intestinalis
ENSLACG00000003276	SMG6	83	43.931	ENSCSAVG00000007638	-	99	37.857	Ciona_savignyi
ENSLACG00000003276	SMG6	100	80.215	ENSCANG00000031764	SMG6	91	80.215	Colobus_angolensis_palliatus
ENSLACG00000003276	SMG6	100	80.430	ENSDORG00000016614	Smg6	94	81.081	Dipodomys_ordii
ENSLACG00000003276	SMG6	100	79.785	ENSFDAG00000015106	SMG6	94	79.464	Fukomys_damarensis
ENSLACG00000003276	SMG6	100	80.000	ENSHGLG00000012882	SMG6	94	79.464	Heterocephalus_glaber_female
ENSLACG00000003276	SMG6	100	80.000	ENSHGLG00100017815	SMG6	94	79.464	Heterocephalus_glaber_male
ENSLACG00000003276	SMG6	100	80.645	ENSSTOG00000028127	SMG6	95	80.804	Ictidomys_tridecemlineatus
ENSLACG00000003276	SMG6	92	79.581	ENSMGAG00000017200	-	100	79.837	Meleagris_gallopavo
ENSLACG00000003276	SMG6	90	46.597	ENSMODG00000024463	-	85	40.179	Monodelphis_domestica
ENSLACG00000003276	SMG6	90	46.597	ENSMODG00000024460	-	85	40.312	Monodelphis_domestica
ENSLACG00000003276	SMG6	95	39.955	ENSMODG00000024395	-	85	40.179	Monodelphis_domestica
ENSLACG00000003276	SMG6	90	45.550	ENSMODG00000024410	-	85	35.320	Monodelphis_domestica
ENSLACG00000003276	SMG6	100	80.000	MGP_CAROLIEiJ_G0016729	Smg6	93	80.631	Mus_caroli
ENSLACG00000003276	SMG6	100	80.000	ENSMUSG00000038290	Smg6	94	79.911	Mus_musculus
ENSLACG00000003276	SMG6	100	80.000	MGP_PahariEiJ_G0017866	Smg6	94	79.911	Mus_pahari
ENSLACG00000003276	SMG6	100	80.000	MGP_SPRETEiJ_G0017572	Smg6	94	79.911	Mus_spretus
ENSLACG00000003276	SMG6	100	79.355	ENSNGAG00000007287	Smg6	95	79.464	Nannospalax_galili
ENSLACG00000003276	SMG6	100	80.000	ENSNLEG00000017171	SMG6	91	80.000	Nomascus_leucogenys
ENSLACG00000003276	SMG6	100	80.472	ENSODEG00000008038	SMG6	85	74.556	Octodon_degus
ENSLACG00000003276	SMG6	74	81.046	ENSOANG00000030166	-	80	81.818	Ornithorhynchus_anatinus
ENSLACG00000003276	SMG6	100	80.430	ENSPTIG00000008925	SMG6	91	80.430	Panthera_tigris_altaica
ENSLACG00000003276	SMG6	100	80.000	ENSPTRG00000008544	SMG6	91	80.000	Pan_troglodytes
ENSLACG00000003276	SMG6	100	79.785	ENSPEMG00000020707	Smg6	96	79.464	Peromyscus_maniculatus_bairdii
ENSLACG00000003276	SMG6	100	80.215	ENSRROG00000030423	SMG6	91	80.215	Rhinopithecus_roxellana
ENSLACG00000003276	SMG6	97	39.738	ENSSHAG00000000380	-	90	39.738	Sarcophilus_harrisii