EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000003282 (Gene tree)
Gene ID: 102363313
Gene Symbol: LIG4
Alias: -
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 2736 bases
Position: chrJH126913.1:77097-79832
Accession: 102363313
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000003688	RNA_ligase	PF09414.10	1.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000003721	LIG4-201	2736	XM_005996998	ENSLACP00000003688	911 (aa)	XP_005997060	H3A217

Gene Model

Click here to download ENSLACG00000003282's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000003282's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000003282	LIG4	99	72.677	ENSG00000174405	LIG4	100	72.630	Homo_sapiens
ENSLACG00000003282	LIG4	100	68.092	ENSAPOG00000000866	lig4	100	68.092	Acanthochromis_polyacanthus
ENSLACG00000003282	LIG4	99	71.318	ENSAMEG00000019685	LIG4	99	71.318	Ailuropoda_melanoleuca
ENSLACG00000003282	LIG4	99	68.277	ENSACIG00000018309	lig4	99	68.277	Amphilophus_citrinellus
ENSLACG00000003282	LIG4	100	67.873	ENSAOCG00000011768	lig4	100	67.873	Amphiprion_ocellaris
ENSLACG00000003282	LIG4	100	67.982	ENSAPEG00000017815	lig4	100	67.982	Amphiprion_percula
ENSLACG00000003282	LIG4	100	68.969	ENSATEG00000005583	lig4	100	68.969	Anabas_testudineus
ENSLACG00000003282	LIG4	96	74.914	ENSAPLG00000001673	LIG4	99	74.914	Anas_platyrhynchos
ENSLACG00000003282	LIG4	99	73.807	ENSACAG00000014566	LIG4	99	73.807	Anolis_carolinensis
ENSLACG00000003282	LIG4	99	72.124	ENSANAG00000012446	LIG4	99	72.124	Aotus_nancymaae
ENSLACG00000003282	LIG4	99	68.386	ENSACLG00000027051	lig4	99	68.386	Astatotilapia_calliptera
ENSLACG00000003282	LIG4	99	67.631	ENSAMXG00000008192	lig4	93	67.631	Astyanax_mexicanus
ENSLACG00000003282	LIG4	99	72.456	ENSBTAG00000015868	LIG4	99	72.456	Bos_taurus
ENSLACG00000003282	LIG4	99	71.792	ENSCJAG00000014689	LIG4	99	71.792	Callithrix_jacchus
ENSLACG00000003282	LIG4	99	71.792	ENSCAFG00000006031	LIG4	99	71.792	Canis_familiaris
ENSLACG00000003282	LIG4	99	71.792	ENSCAFG00020021230	LIG4	99	71.792	Canis_lupus_dingo
ENSLACG00000003282	LIG4	99	71.792	ENSCHIG00000001019	LIG4	99	71.792	Capra_hircus
ENSLACG00000003282	LIG4	99	72.093	ENSCAPG00000006284	LIG4	99	72.093	Cavia_aperea
ENSLACG00000003282	LIG4	99	71.903	ENSCPOG00000014266	LIG4	99	71.903	Cavia_porcellus
ENSLACG00000003282	LIG4	99	72.124	ENSCCAG00000019971	LIG4	99	72.124	Cebus_capucinus
ENSLACG00000003282	LIG4	99	72.247	ENSCATG00000021075	LIG4	99	72.247	Cercocebus_atys
ENSLACG00000003282	LIG4	99	72.235	ENSCLAG00000003376	LIG4	99	72.235	Chinchilla_lanigera
ENSLACG00000003282	LIG4	99	72.456	ENSCSAG00000000211	LIG4	99	72.456	Chlorocebus_sabaeus
ENSLACG00000003282	LIG4	99	76.855	ENSCPBG00000023291	LIG4	100	76.368	Chrysemys_picta_bellii
ENSLACG00000003282	LIG4	69	46.614	ENSCING00000009536	-	97	46.614	Ciona_intestinalis
ENSLACG00000003282	LIG4	83	45.323	ENSCSAVG00000010336	-	98	45.323	Ciona_savignyi
ENSLACG00000003282	LIG4	99	72.235	ENSCANG00000005805	LIG4	99	72.235	Colobus_angolensis_palliatus
ENSLACG00000003282	LIG4	99	71.271	ENSCGRG00001012072	Lig4	99	71.271	Cricetulus_griseus_chok1gshd
ENSLACG00000003282	LIG4	99	71.271	ENSCGRG00000013417	Lig4	99	71.271	Cricetulus_griseus_crigri
ENSLACG00000003282	LIG4	96	69.977	ENSCSEG00000013905	lig4	95	69.977	Cynoglossus_semilaevis
ENSLACG00000003282	LIG4	100	68.237	ENSCVAG00000007896	lig4	100	68.237	Cyprinodon_variegatus
ENSLACG00000003282	LIG4	100	67.325	ENSDARG00000060620	lig4	100	67.325	Danio_rerio
ENSLACG00000003282	LIG4	99	71.934	ENSDNOG00000000513	LIG4	99	72.265	Dasypus_novemcinctus
ENSLACG00000003282	LIG4	99	73.009	ENSDORG00000027303	Lig4	99	73.009	Dipodomys_ordii
ENSLACG00000003282	LIG4	90	31.250	FBgn0030506	Lig4	92	31.250	Drosophila_melanogaster
ENSLACG00000003282	LIG4	98	69.623	ENSETEG00000015563	LIG4	100	70.067	Echinops_telfairi
ENSLACG00000003282	LIG4	98	44.068	ENSEBUG00000014243	lig4	98	44.068	Eptatretus_burgeri
ENSLACG00000003282	LIG4	99	71.681	ENSEASG00005022073	LIG4	99	71.681	Equus_asinus_asinus
ENSLACG00000003282	LIG4	99	71.018	ENSECAG00000003257	LIG4	99	71.018	Equus_caballus
ENSLACG00000003282	LIG4	98	69.034	ENSELUG00000006787	lig4	99	69.145	Esox_lucius
ENSLACG00000003282	LIG4	99	71.128	ENSFCAG00000031985	LIG4	99	71.128	Felis_catus
ENSLACG00000003282	LIG4	89	74.815	ENSFALG00000004214	LIG4	98	74.815	Ficedula_albicollis
ENSLACG00000003282	LIG4	99	71.350	ENSFDAG00000008973	LIG4	99	71.350	Fukomys_damarensis
ENSLACG00000003282	LIG4	100	67.873	ENSFHEG00000007398	lig4	91	67.873	Fundulus_heteroclitus
ENSLACG00000003282	LIG4	85	67.526	ENSGMOG00000012843	lig4	99	67.526	Gadus_morhua
ENSLACG00000003282	LIG4	100	74.261	ENSGALG00000016854	LIG4	100	74.261	Gallus_gallus
ENSLACG00000003282	LIG4	98	68.862	ENSGAFG00000019779	lig4	95	68.778	Gambusia_affinis
ENSLACG00000003282	LIG4	99	66.777	ENSGACG00000014135	lig4	99	66.777	Gasterosteus_aculeatus
ENSLACG00000003282	LIG4	99	72.456	ENSGGOG00000027771	LIG4	99	72.456	Gorilla_gorilla
ENSLACG00000003282	LIG4	99	68.167	ENSHBUG00000006245	lig4	99	68.167	Haplochromis_burtoni
ENSLACG00000003282	LIG4	99	71.571	ENSHGLG00000000718	LIG4	99	71.571	Heterocephalus_glaber_female
ENSLACG00000003282	LIG4	99	71.571	ENSHGLG00100003265	LIG4	99	71.571	Heterocephalus_glaber_male
ENSLACG00000003282	LIG4	99	67.179	ENSHCOG00000012010	lig4	99	67.179	Hippocampus_comes
ENSLACG00000003282	LIG4	100	67.325	ENSIPUG00000013748	lig4	100	67.325	Ictalurus_punctatus
ENSLACG00000003282	LIG4	99	72.235	ENSSTOG00000024303	LIG4	99	72.235	Ictidomys_tridecemlineatus
ENSLACG00000003282	LIG4	99	71.145	ENSJJAG00000006750	Lig4	99	71.145	Jaculus_jaculus
ENSLACG00000003282	LIG4	100	67.105	ENSKMAG00000001149	lig4	100	67.105	Kryptolebias_marmoratus
ENSLACG00000003282	LIG4	91	68.478	ENSLBEG00000014578	lig4	100	68.478	Labrus_bergylta
ENSLACG00000003282	LIG4	100	73.713	ENSLOCG00000008901	lig4	99	73.713	Lepisosteus_oculatus
ENSLACG00000003282	LIG4	99	69.803	ENSLAFG00000031152	LIG4	99	69.803	Loxodonta_africana
ENSLACG00000003282	LIG4	99	72.456	ENSMFAG00000037235	LIG4	99	72.456	Macaca_fascicularis
ENSLACG00000003282	LIG4	99	72.456	ENSMMUG00000008874	LIG4	99	72.456	Macaca_mulatta
ENSLACG00000003282	LIG4	99	72.456	ENSMNEG00000023575	LIG4	99	72.456	Macaca_nemestrina
ENSLACG00000003282	LIG4	99	72.345	ENSMLEG00000026720	LIG4	99	72.345	Mandrillus_leucophaeus
ENSLACG00000003282	LIG4	100	68.202	ENSMAMG00000008472	lig4	99	68.202	Mastacembelus_armatus
ENSLACG00000003282	LIG4	99	68.277	ENSMZEG00005001855	lig4	99	68.277	Maylandia_zebra
ENSLACG00000003282	LIG4	100	73.823	ENSMGAG00000015532	LIG4	100	73.823	Meleagris_gallopavo
ENSLACG00000003282	LIG4	99	69.824	ENSMOCG00000019000	Lig4	99	69.824	Microtus_ochrogaster
ENSLACG00000003282	LIG4	100	66.447	ENSMMOG00000004390	lig4	100	66.447	Mola_mola
ENSLACG00000003282	LIG4	99	72.687	ENSMODG00000025064	LIG4	99	73.047	Monodelphis_domestica
ENSLACG00000003282	LIG4	100	67.434	ENSMALG00000008555	lig4	100	67.434	Monopterus_albus
ENSLACG00000003282	LIG4	99	71.350	MGP_CAROLIEiJ_G0030809	Lig4	99	71.350	Mus_caroli
ENSLACG00000003282	LIG4	99	71.350	ENSMUSG00000049717	Lig4	99	71.350	Mus_musculus
ENSLACG00000003282	LIG4	99	71.018	MGP_PahariEiJ_G0021270	Lig4	99	71.018	Mus_pahari
ENSLACG00000003282	LIG4	99	71.128	MGP_SPRETEiJ_G0031917	Lig4	99	71.128	Mus_spretus
ENSLACG00000003282	LIG4	99	70.504	ENSMPUG00000018675	LIG4	99	70.504	Mustela_putorius_furo
ENSLACG00000003282	LIG4	99	72.677	ENSMLUG00000001267	LIG4	99	72.677	Myotis_lucifugus
ENSLACG00000003282	LIG4	99	71.460	ENSNGAG00000013258	Lig4	99	71.460	Nannospalax_galili
ENSLACG00000003282	LIG4	99	67.728	ENSNBRG00000021252	lig4	99	67.728	Neolamprologus_brichardi
ENSLACG00000003282	LIG4	99	72.235	ENSNLEG00000007888	LIG4	99	72.235	Nomascus_leucogenys
ENSLACG00000003282	LIG4	99	69.690	ENSOPRG00000005765	LIG4	99	69.690	Ochotona_princeps
ENSLACG00000003282	LIG4	99	70.264	ENSODEG00000019683	LIG4	99	70.264	Octodon_degus
ENSLACG00000003282	LIG4	99	68.167	ENSONIG00000011969	lig4	99	68.167	Oreochromis_niloticus
ENSLACG00000003282	LIG4	99	72.124	ENSOCUG00000015734	LIG4	99	72.124	Oryctolagus_cuniculus
ENSLACG00000003282	LIG4	99	67.689	ENSORLG00000004041	lig4	99	67.689	Oryzias_latipes
ENSLACG00000003282	LIG4	99	67.689	ENSORLG00020019607	lig4	99	67.689	Oryzias_latipes_hni
ENSLACG00000003282	LIG4	99	67.470	ENSORLG00015017754	lig4	99	67.470	Oryzias_latipes_hsok
ENSLACG00000003282	LIG4	75	72.635	ENSOMEG00000003459	lig4	99	72.635	Oryzias_melastigma
ENSLACG00000003282	LIG4	99	71.761	ENSOGAG00000032120	LIG4	99	71.761	Otolemur_garnettii
ENSLACG00000003282	LIG4	81	75.403	ENSOARG00000005590	LIG4	98	75.403	Ovis_aries
ENSLACG00000003282	LIG4	99	72.456	ENSPPAG00000032998	LIG4	99	72.456	Pan_paniscus
ENSLACG00000003282	LIG4	99	71.350	ENSPPRG00000017804	LIG4	99	71.350	Panthera_pardus
ENSLACG00000003282	LIG4	99	71.239	ENSPTIG00000010051	LIG4	99	71.239	Panthera_tigris_altaica
ENSLACG00000003282	LIG4	99	72.566	ENSPTRG00000006025	LIG4	99	72.566	Pan_troglodytes
ENSLACG00000003282	LIG4	99	72.357	ENSPANG00000007562	LIG4	99	72.357	Papio_anubis
ENSLACG00000003282	LIG4	100	68.421	ENSPKIG00000011645	lig4	99	68.421	Paramormyrops_kingsleyae
ENSLACG00000003282	LIG4	100	75.658	ENSPSIG00000001504	LIG4	100	75.658	Pelodiscus_sinensis
ENSLACG00000003282	LIG4	98	66.741	ENSPMGG00000013486	lig4	99	66.227	Periophthalmus_magnuspinnatus
ENSLACG00000003282	LIG4	99	70.939	ENSPEMG00000000076	Lig4	99	70.939	Peromyscus_maniculatus_bairdii
ENSLACG00000003282	LIG4	99	72.357	ENSPCIG00000021882	LIG4	99	72.357	Phascolarctos_cinereus
ENSLACG00000003282	LIG4	98	69.050	ENSPFOG00000000797	lig4	98	68.966	Poecilia_formosa
ENSLACG00000003282	LIG4	98	68.939	ENSPLAG00000001196	lig4	98	68.854	Poecilia_latipinna
ENSLACG00000003282	LIG4	98	69.162	ENSPMEG00000021353	lig4	98	69.077	Poecilia_mexicana
ENSLACG00000003282	LIG4	98	68.380	ENSPREG00000007323	lig4	98	68.854	Poecilia_reticulata
ENSLACG00000003282	LIG4	99	72.345	ENSPPYG00000005540	LIG4	99	72.345	Pongo_abelii
ENSLACG00000003282	LIG4	99	71.903	ENSPVAG00000016403	LIG4	99	71.903	Pteropus_vampyrus
ENSLACG00000003282	LIG4	99	68.277	ENSPNYG00000009660	lig4	99	68.277	Pundamilia_nyererei
ENSLACG00000003282	LIG4	99	67.853	ENSPNAG00000028069	LIG4	99	67.853	Pygocentrus_nattereri
ENSLACG00000003282	LIG4	99	67.853	ENSPNAG00000028056	lig4	99	67.853	Pygocentrus_nattereri
ENSLACG00000003282	LIG4	99	70.154	ENSRNOG00000014605	Lig4	99	70.154	Rattus_norvegicus
ENSLACG00000003282	LIG4	99	71.018	ENSRBIG00000039962	LIG4	99	71.018	Rhinopithecus_bieti
ENSLACG00000003282	LIG4	99	72.013	ENSRROG00000006040	LIG4	99	72.013	Rhinopithecus_roxellana
ENSLACG00000003282	LIG4	99	71.681	ENSSBOG00000019029	LIG4	99	71.681	Saimiri_boliviensis_boliviensis
ENSLACG00000003282	LIG4	99	70.925	ENSSHAG00000009525	LIG4	99	70.925	Sarcophilus_harrisii
ENSLACG00000003282	LIG4	100	67.908	ENSSFOG00015012835	lig4	100	67.908	Scleropages_formosus
ENSLACG00000003282	LIG4	100	65.351	ENSSMAG00000011267	lig4	100	65.351	Scophthalmus_maximus
ENSLACG00000003282	LIG4	100	68.634	ENSSDUG00000010343	lig4	100	68.634	Seriola_dumerili
ENSLACG00000003282	LIG4	100	67.213	ENSSLDG00000003239	lig4	100	67.213	Seriola_lalandi_dorsalis
ENSLACG00000003282	LIG4	99	70.492	ENSSARG00000006573	LIG4	99	70.492	Sorex_araneus
ENSLACG00000003282	LIG4	92	76.310	ENSSPUG00000002444	LIG4	100	76.429	Sphenodon_punctatus
ENSLACG00000003282	LIG4	100	67.434	ENSSPAG00000001609	lig4	100	67.434	Stegastes_partitus
ENSLACG00000003282	LIG4	99	71.444	ENSSSCG00000009540	LIG4	99	71.555	Sus_scrofa
ENSLACG00000003282	LIG4	99	73.976	ENSTGUG00000010795	LIG4	99	73.976	Taeniopygia_guttata
ENSLACG00000003282	LIG4	100	67.398	ENSTRUG00000009984	lig4	100	67.398	Takifugu_rubripes
ENSLACG00000003282	LIG4	100	66.667	ENSTNIG00000010348	lig4	100	66.886	Tetraodon_nigroviridis
ENSLACG00000003282	LIG4	99	72.235	ENSTBEG00000017741	LIG4	99	72.235	Tupaia_belangeri
ENSLACG00000003282	LIG4	99	72.456	ENSTTRG00000012660	LIG4	99	72.456	Tursiops_truncatus
ENSLACG00000003282	LIG4	99	71.053	ENSUAMG00000003773	LIG4	99	71.053	Ursus_americanus
ENSLACG00000003282	LIG4	100	71.021	ENSXETG00000002654	lig4	100	71.021	Xenopus_tropicalis
ENSLACG00000003282	LIG4	98	69.162	ENSXCOG00000017401	lig4	98	69.077	Xiphophorus_couchianus
ENSLACG00000003282	LIG4	98	69.162	ENSXMAG00000015142	lig4	98	69.077	Xiphophorus_maculatus