EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000003306 (Gene tree)
Gene ID: 102356977
Gene Symbol: GAR1
Alias: NOLA1
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 22963 bases
Position: chrJH129575.1:78023-100985
Accession: 102356977
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000003714	Gar1	PF04410.14	2.4e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000003747	GAR1-201	1661	XM_006011973	ENSLACP00000003714	166 (aa)	XP_006012035	H3A243

Gene Model

Click here to download ENSLACG00000003306's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000003306's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000003306	GAR1	65	87.037	ENSG00000109534	GAR1	79	84.298	Homo_sapiens
ENSLACG00000003306	GAR1	64	89.623	ENSAPOG00000019754	gar1	50	89.623	Acanthochromis_polyacanthus
ENSLACG00000003306	GAR1	65	86.111	ENSAMEG00000004605	GAR1	74	65.563	Ailuropoda_melanoleuca
ENSLACG00000003306	GAR1	64	89.623	ENSAOCG00000020947	gar1	50	89.623	Amphiprion_ocellaris
ENSLACG00000003306	GAR1	64	89.623	ENSAPEG00000001676	gar1	50	89.623	Amphiprion_percula
ENSLACG00000003306	GAR1	64	89.623	ENSATEG00000003733	gar1	56	85.833	Anabas_testudineus
ENSLACG00000003306	GAR1	64	87.850	ENSAPLG00000010926	GAR1	59	87.850	Anas_platyrhynchos
ENSLACG00000003306	GAR1	64	87.850	ENSACAG00000010031	GAR1	50	87.850	Anolis_carolinensis
ENSLACG00000003306	GAR1	65	87.037	ENSANAG00000021608	GAR1	79	84.298	Aotus_nancymaae
ENSLACG00000003306	GAR1	65	87.037	ENSBTAG00000000748	GAR1	65	86.607	Bos_taurus
ENSLACG00000003306	GAR1	60	58.586	WBGene00022046	Y66H1A.4	69	52.941	Caenorhabditis_elegans
ENSLACG00000003306	GAR1	65	87.037	ENSCJAG00000004041	GAR1	79	84.298	Callithrix_jacchus
ENSLACG00000003306	GAR1	50	85.542	ENSCAFG00000011503	GAR1	55	57.353	Canis_familiaris
ENSLACG00000003306	GAR1	63	87.619	ENSCAFG00020015566	GAR1	79	66.225	Canis_lupus_dingo
ENSLACG00000003306	GAR1	60	78.788	ENSCHIG00000011049	-	74	60.544	Capra_hircus
ENSLACG00000003306	GAR1	65	87.037	ENSCHIG00000016026	-	63	86.607	Capra_hircus
ENSLACG00000003306	GAR1	65	87.037	ENSTSYG00000013668	-	64	84.298	Carlito_syrichta
ENSLACG00000003306	GAR1	65	78.704	ENSTSYG00000026632	-	54	79.245	Carlito_syrichta
ENSLACG00000003306	GAR1	77	83.594	ENSCPOG00000004216	GAR1	77	82.812	Cavia_porcellus
ENSLACG00000003306	GAR1	65	87.037	ENSCCAG00000029372	GAR1	79	84.298	Cebus_capucinus
ENSLACG00000003306	GAR1	65	87.037	ENSCATG00000021854	GAR1	80	84.298	Cercocebus_atys
ENSLACG00000003306	GAR1	65	86.111	ENSCLAG00000005335	GAR1	69	90.909	Chinchilla_lanigera
ENSLACG00000003306	GAR1	63	87.619	ENSCSAG00000003922	GAR1	54	87.736	Chlorocebus_sabaeus
ENSLACG00000003306	GAR1	86	85.156	ENSCPBG00000004310	GAR1	80	89.474	Chrysemys_picta_bellii
ENSLACG00000003306	GAR1	59	69.388	ENSCING00000005744	-	51	66.990	Ciona_intestinalis
ENSLACG00000003306	GAR1	58	69.792	ENSCSAVG00000006355	-	50	69.000	Ciona_savignyi
ENSLACG00000003306	GAR1	65	86.111	ENSCANG00000039262	GAR1	80	83.471	Colobus_angolensis_palliatus
ENSLACG00000003306	GAR1	55	90.217	ENSCGRG00000010165	-	72	90.217	Cricetulus_griseus_crigri
ENSLACG00000003306	GAR1	75	84.000	ENSCVAG00000002103	gar1	51	87.736	Cyprinodon_variegatus
ENSLACG00000003306	GAR1	64	87.736	ENSDARG00000076526	gar1	61	73.913	Danio_rerio
ENSLACG00000003306	GAR1	65	87.963	ENSDNOG00000037632	GAR1	54	88.679	Dasypus_novemcinctus
ENSLACG00000003306	GAR1	65	87.963	ENSEASG00005004658	GAR1	62	87.500	Equus_asinus_asinus
ENSLACG00000003306	GAR1	65	87.037	ENSECAG00000013624	GAR1	62	86.607	Equus_caballus
ENSLACG00000003306	GAR1	62	87.379	ENSELUG00000021108	gar1	73	69.136	Esox_lucius
ENSLACG00000003306	GAR1	65	87.037	ENSFCAG00000040791	-	60	86.607	Felis_catus
ENSLACG00000003306	GAR1	79	82.443	ENSFHEG00000008068	gar1	58	84.000	Fundulus_heteroclitus
ENSLACG00000003306	GAR1	64	87.736	ENSGAFG00000016833	gar1	51	86.777	Gambusia_affinis
ENSLACG00000003306	GAR1	86	85.039	ENSGAGG00000004393	GAR1	81	88.596	Gopherus_agassizii
ENSLACG00000003306	GAR1	63	71.429	ENSGGOG00000036205	-	76	56.376	Gorilla_gorilla
ENSLACG00000003306	GAR1	65	87.963	ENSGGOG00000008681	GAR1	79	85.124	Gorilla_gorilla
ENSLACG00000003306	GAR1	58	90.625	ENSHBUG00000023860	gar1	58	84.956	Haplochromis_burtoni
ENSLACG00000003306	GAR1	64	88.679	ENSHGLG00000000493	GAR1	72	92.727	Heterocephalus_glaber_female
ENSLACG00000003306	GAR1	64	88.679	ENSHCOG00000008656	gar1	95	72.727	Hippocampus_comes
ENSLACG00000003306	GAR1	64	88.679	ENSIPUG00000003194	gar1	50	88.679	Ictalurus_punctatus
ENSLACG00000003306	GAR1	64	87.736	ENSSTOG00000005577	GAR1	71	92.727	Ictidomys_tridecemlineatus
ENSLACG00000003306	GAR1	67	83.036	ENSKMAG00000010402	gar1	57	82.645	Kryptolebias_marmoratus
ENSLACG00000003306	GAR1	64	86.792	ENSLBEG00000015647	gar1	60	80.000	Labrus_bergylta
ENSLACG00000003306	GAR1	65	87.037	ENSMFAG00000024592	GAR1	80	84.298	Macaca_fascicularis
ENSLACG00000003306	GAR1	64	74.766	ENSMFAG00000003572	-	59	69.167	Macaca_fascicularis
ENSLACG00000003306	GAR1	65	87.037	ENSMMUG00000021225	GAR1	80	84.298	Macaca_mulatta
ENSLACG00000003306	GAR1	64	74.766	ENSMMUG00000038929	-	58	69.167	Macaca_mulatta
ENSLACG00000003306	GAR1	65	87.037	ENSMNEG00000042594	GAR1	80	84.298	Macaca_nemestrina
ENSLACG00000003306	GAR1	65	87.037	ENSMLEG00000002496	GAR1	62	84.298	Mandrillus_leucophaeus
ENSLACG00000003306	GAR1	63	89.423	ENSMAMG00000017583	gar1	71	79.845	Mastacembelus_armatus
ENSLACG00000003306	GAR1	64	89.623	ENSMAUG00000016788	Gar1	70	92.727	Mesocricetus_auratus
ENSLACG00000003306	GAR1	68	84.071	ENSMICG00000003326	GAR1	79	85.950	Microcebus_murinus
ENSLACG00000003306	GAR1	64	88.679	ENSMOCG00000001340	Gar1	70	92.727	Microtus_ochrogaster
ENSLACG00000003306	GAR1	64	86.792	ENSMMOG00000004156	gar1	61	78.400	Mola_mola
ENSLACG00000003306	GAR1	66	85.455	ENSMODG00000005897	GAR1	62	78.400	Monodelphis_domestica
ENSLACG00000003306	GAR1	64	86.792	ENSMALG00000009672	gar1	52	85.841	Monopterus_albus
ENSLACG00000003306	GAR1	64	88.679	MGP_CAROLIEiJ_G0025627	Gar1	70	92.727	Mus_caroli
ENSLACG00000003306	GAR1	64	88.679	ENSMUSG00000028010	Gar1	70	92.727	Mus_musculus
ENSLACG00000003306	GAR1	64	88.679	MGP_PahariEiJ_G0027076	Gar1	70	92.727	Mus_pahari
ENSLACG00000003306	GAR1	64	88.679	MGP_SPRETEiJ_G0026580	Gar1	70	92.727	Mus_spretus
ENSLACG00000003306	GAR1	65	87.037	ENSMPUG00000008615	GAR1	60	86.607	Mustela_putorius_furo
ENSLACG00000003306	GAR1	65	87.037	ENSMLUG00000003776	GAR1	62	80.833	Myotis_lucifugus
ENSLACG00000003306	GAR1	65	87.963	ENSNGAG00000008268	Gar1	71	92.727	Nannospalax_galili
ENSLACG00000003306	GAR1	64	88.679	ENSNBRG00000014828	gar1	53	85.124	Neolamprologus_brichardi
ENSLACG00000003306	GAR1	64	73.585	ENSNLEG00000034282	-	53	73.333	Nomascus_leucogenys
ENSLACG00000003306	GAR1	57	84.211	ENSOPRG00000012089	GAR1	53	80.342	Ochotona_princeps
ENSLACG00000003306	GAR1	89	84.127	ENSODEG00000011083	GAR1	80	84.127	Octodon_degus
ENSLACG00000003306	GAR1	89	85.714	ENSONIG00000001085	gar1	81	78.676	Oreochromis_niloticus
ENSLACG00000003306	GAR1	64	86.916	ENSOANG00000003665	GAR1	74	77.778	Ornithorhynchus_anatinus
ENSLACG00000003306	GAR1	65	87.037	ENSOCUG00000003901	GAR1	79	83.471	Oryctolagus_cuniculus
ENSLACG00000003306	GAR1	64	87.736	ENSORLG00000020583	gar1	77	84.298	Oryzias_latipes
ENSLACG00000003306	GAR1	64	87.736	ENSORLG00020008602	gar1	77	84.298	Oryzias_latipes_hni
ENSLACG00000003306	GAR1	64	87.736	ENSORLG00015017643	gar1	77	84.298	Oryzias_latipes_hsok
ENSLACG00000003306	GAR1	64	87.736	ENSOMEG00000007911	GAR1	59	84.298	Oryzias_melastigma
ENSLACG00000003306	GAR1	65	87.037	ENSOGAG00000004693	GAR1	65	82.258	Otolemur_garnettii
ENSLACG00000003306	GAR1	65	87.037	ENSOARG00000004910	GAR1	64	86.607	Ovis_aries
ENSLACG00000003306	GAR1	65	87.037	ENSPPAG00000014081	GAR1	53	87.736	Pan_paniscus
ENSLACG00000003306	GAR1	65	87.037	ENSPPRG00000023697	GAR1	60	86.607	Panthera_pardus
ENSLACG00000003306	GAR1	65	87.037	ENSPTIG00000021565	GAR1	60	86.607	Panthera_tigris_altaica
ENSLACG00000003306	GAR1	65	87.037	ENSPTRG00000016364	GAR1	79	84.298	Pan_troglodytes
ENSLACG00000003306	GAR1	62	72.816	ENSPTRG00000049340	-	50	72.642	Pan_troglodytes
ENSLACG00000003306	GAR1	64	74.766	ENSPANG00000033062	-	60	69.421	Papio_anubis
ENSLACG00000003306	GAR1	65	87.037	ENSPANG00000000639	GAR1	79	84.298	Papio_anubis
ENSLACG00000003306	GAR1	63	91.346	ENSPKIG00000018991	gar1	57	81.250	Paramormyrops_kingsleyae
ENSLACG00000003306	GAR1	64	90.654	ENSPSIG00000002970	GAR1	78	79.851	Pelodiscus_sinensis
ENSLACG00000003306	GAR1	82	82.645	ENSPMGG00000022004	gar1	53	82.645	Periophthalmus_magnuspinnatus
ENSLACG00000003306	GAR1	64	89.623	ENSPEMG00000015838	Gar1	70	92.727	Peromyscus_maniculatus_bairdii
ENSLACG00000003306	GAR1	64	87.736	ENSPFOG00000024155	gar1	57	86.777	Poecilia_formosa
ENSLACG00000003306	GAR1	64	87.736	ENSPLAG00000015056	gar1	57	86.777	Poecilia_latipinna
ENSLACG00000003306	GAR1	64	87.736	ENSPMEG00000009320	gar1	58	86.777	Poecilia_mexicana
ENSLACG00000003306	GAR1	64	87.736	ENSPREG00000010377	gar1	52	86.777	Poecilia_reticulata
ENSLACG00000003306	GAR1	65	87.037	ENSPPYG00000014996	GAR1	79	84.298	Pongo_abelii
ENSLACG00000003306	GAR1	75	66.013	ENSPCOG00000027049	GAR1	54	87.736	Propithecus_coquereli
ENSLACG00000003306	GAR1	64	88.679	ENSPNYG00000020926	gar1	68	85.124	Pundamilia_nyererei
ENSLACG00000003306	GAR1	89	84.375	ENSPNAG00000019686	gar1	66	77.099	Pygocentrus_nattereri
ENSLACG00000003306	GAR1	64	89.720	ENSRNOG00000061146	Gar1	62	89.623	Rattus_norvegicus
ENSLACG00000003306	GAR1	64	87.736	ENSRBIG00000019547	GAR1	80	84.298	Rhinopithecus_bieti
ENSLACG00000003306	GAR1	68	70.796	ENSRBIG00000042411	-	65	64.662	Rhinopithecus_bieti
ENSLACG00000003306	GAR1	65	87.037	ENSRROG00000028454	GAR1	80	84.298	Rhinopithecus_roxellana
ENSLACG00000003306	GAR1	68	70.796	ENSRROG00000044348	-	63	64.662	Rhinopithecus_roxellana
ENSLACG00000003306	GAR1	77	50.781	YHR089C	-	65	48.529	Saccharomyces_cerevisiae
ENSLACG00000003306	GAR1	65	87.037	ENSSBOG00000024785	GAR1	69	84.298	Saimiri_boliviensis_boliviensis
ENSLACG00000003306	GAR1	75	85.600	ENSSDUG00000002130	gar1	65	85.600	Seriola_dumerili
ENSLACG00000003306	GAR1	64	88.679	ENSSLDG00000023264	gar1	80	85.124	Seriola_lalandi_dorsalis
ENSLACG00000003306	GAR1	67	87.500	ENSSPUG00000008707	GAR1	62	90.090	Sphenodon_punctatus
ENSLACG00000003306	GAR1	64	89.623	ENSSPAG00000005974	gar1	64	85.833	Stegastes_partitus
ENSLACG00000003306	GAR1	65	87.037	ENSSSCG00000009137	GAR1	75	86.607	Sus_scrofa
ENSLACG00000003306	GAR1	58	91.667	ENSTGUG00000004185	GAR1	65	91.667	Taeniopygia_guttata
ENSLACG00000003306	GAR1	64	86.792	ENSTRUG00000020580	gar1	51	86.792	Takifugu_rubripes
ENSLACG00000003306	GAR1	62	89.320	ENSTNIG00000013023	gar1	60	88.679	Tetraodon_nigroviridis
ENSLACG00000003306	GAR1	63	87.619	ENSUAMG00000005652	GAR1	79	66.225	Ursus_americanus
ENSLACG00000003306	GAR1	65	87.037	ENSUMAG00000000776	GAR1	64	86.607	Ursus_maritimus
ENSLACG00000003306	GAR1	65	87.037	ENSVPAG00000009844	GAR1	57	86.607	Vicugna_pacos
ENSLACG00000003306	GAR1	65	87.037	ENSVVUG00000017612	GAR1	64	84.298	Vulpes_vulpes
ENSLACG00000003306	GAR1	64	87.736	ENSXCOG00000014843	GAR1	51	86.667	Xiphophorus_couchianus
ENSLACG00000003306	GAR1	64	87.736	ENSXMAG00000002316	GAR1	51	86.667	Xiphophorus_maculatus