EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000003565 (Gene tree)
Gene ID: 102349695
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 38716 bases
Position: chrJH128968.1:88063-126778
Accession: 102349695
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000004003	PRP21_like_P	PF12230.8	1.2e-52	1	1
ENSLACP00000004003	Surp	PF01805.20	5.2e-46	1	2
ENSLACP00000004003	Surp	PF01805.20	5.2e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000004039	SF3A1-201	6727	XM_006010622	ENSLACP00000004003	787 (aa)	XP_006010684	H3A2Y2

Gene Model

Click here to download ENSLACG00000003565's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000003565's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000003565	SF3A1	97	88.672	ENSG00000099995	SF3A1	100	86.517	Homo_sapiens
ENSLACG00000003565	SF3A1	100	84.450	ENSAPOG00000020465	sf3a1	100	84.450	Acanthochromis_polyacanthus
ENSLACG00000003565	SF3A1	97	88.151	ENSAMEG00000007737	SF3A1	100	86.483	Ailuropoda_melanoleuca
ENSLACG00000003565	SF3A1	100	83.838	ENSACIG00000020672	sf3a1	100	83.818	Amphilophus_citrinellus
ENSLACG00000003565	SF3A1	100	84.197	ENSAOCG00000003060	sf3a1	100	84.197	Amphiprion_ocellaris
ENSLACG00000003565	SF3A1	100	84.324	ENSAPEG00000010735	sf3a1	100	84.324	Amphiprion_percula
ENSLACG00000003565	SF3A1	97	84.615	ENSATEG00000021201	sf3a1	96	85.156	Anabas_testudineus
ENSLACG00000003565	SF3A1	96	87.615	ENSAPLG00000009057	SF3A1	99	86.381	Anas_platyrhynchos
ENSLACG00000003565	SF3A1	100	83.086	ENSACAG00000009415	SF3A1	100	83.210	Anolis_carolinensis
ENSLACG00000003565	SF3A1	97	88.281	ENSANAG00000032045	SF3A1	100	87.077	Aotus_nancymaae
ENSLACG00000003565	SF3A1	100	82.911	ENSACLG00000012622	sf3a1	100	83.671	Astatotilapia_calliptera
ENSLACG00000003565	SF3A1	99	81.772	ENSAMXG00000005382	sf3a1	99	82.911	Astyanax_mexicanus
ENSLACG00000003565	SF3A1	97	88.411	ENSBTAG00000003390	SF3A1	100	87.202	Bos_taurus
ENSLACG00000003565	SF3A1	81	45.833	WBGene00004188	prp-21	89	46.139	Caenorhabditis_elegans
ENSLACG00000003565	SF3A1	97	88.411	ENSCJAG00000010370	SF3A1	100	87.202	Callithrix_jacchus
ENSLACG00000003565	SF3A1	97	88.151	ENSCAFG00000012559	SF3A1	100	86.951	Canis_familiaris
ENSLACG00000003565	SF3A1	97	88.151	ENSCAFG00020000838	SF3A1	100	86.951	Canis_lupus_dingo
ENSLACG00000003565	SF3A1	97	88.411	ENSCHIG00000018642	SF3A1	100	87.202	Capra_hircus
ENSLACG00000003565	SF3A1	97	88.281	ENSTSYG00000004739	SF3A1	100	86.951	Carlito_syrichta
ENSLACG00000003565	SF3A1	94	73.190	ENSCAPG00000015414	SF3A1	97	72.922	Cavia_aperea
ENSLACG00000003565	SF3A1	97	88.932	ENSCPOG00000014589	SF3A1	100	87.202	Cavia_porcellus
ENSLACG00000003565	SF3A1	97	88.281	ENSCCAG00000032006	SF3A1	100	87.077	Cebus_capucinus
ENSLACG00000003565	SF3A1	97	88.281	ENSCATG00000029241	SF3A1	100	87.077	Cercocebus_atys
ENSLACG00000003565	SF3A1	97	88.151	ENSCLAG00000006508	SF3A1	100	86.826	Chinchilla_lanigera
ENSLACG00000003565	SF3A1	97	88.281	ENSCSAG00000009470	SF3A1	100	87.077	Chlorocebus_sabaeus
ENSLACG00000003565	SF3A1	58	94.382	ENSCHOG00000005201	SF3A1	65	94.382	Choloepus_hoffmanni
ENSLACG00000003565	SF3A1	100	84.868	ENSCPBG00000007595	SF3A1	100	85.624	Chrysemys_picta_bellii
ENSLACG00000003565	SF3A1	98	53.038	ENSCING00000008526	-	98	52.645	Ciona_intestinalis
ENSLACG00000003565	SF3A1	97	52.598	ENSCSAVG00000005608	-	91	67.544	Ciona_savignyi
ENSLACG00000003565	SF3A1	97	88.281	ENSCANG00000033564	SF3A1	100	87.077	Colobus_angolensis_palliatus
ENSLACG00000003565	SF3A1	96	88.451	ENSCGRG00001008933	Sf3a1	100	87.202	Cricetulus_griseus_chok1gshd
ENSLACG00000003565	SF3A1	96	88.451	ENSCGRG00000006127	Sf3a1	100	87.202	Cricetulus_griseus_crigri
ENSLACG00000003565	SF3A1	100	83.291	ENSCSEG00000010792	sf3a1	100	82.532	Cynoglossus_semilaevis
ENSLACG00000003565	SF3A1	100	82.532	ENSCVAG00000004560	sf3a1	100	82.360	Cyprinodon_variegatus
ENSLACG00000003565	SF3A1	100	82.174	ENSDARG00000041887	sf3a1	100	85.876	Danio_rerio
ENSLACG00000003565	SF3A1	97	88.802	ENSDNOG00000010629	SF3A1	100	87.016	Dasypus_novemcinctus
ENSLACG00000003565	SF3A1	97	88.672	ENSDORG00000005613	Sf3a1	100	87.077	Dipodomys_ordii
ENSLACG00000003565	SF3A1	84	60.073	FBgn0266917	Sf3a1	84	59.927	Drosophila_melanogaster
ENSLACG00000003565	SF3A1	85	88.191	ENSETEG00000017194	SF3A1	100	83.898	Echinops_telfairi
ENSLACG00000003565	SF3A1	99	66.708	ENSEBUG00000001285	sf3a1	97	66.994	Eptatretus_burgeri
ENSLACG00000003565	SF3A1	97	88.411	ENSEASG00005010254	SF3A1	100	87.202	Equus_asinus_asinus
ENSLACG00000003565	SF3A1	97	88.411	ENSECAG00000023962	SF3A1	100	87.202	Equus_caballus
ENSLACG00000003565	SF3A1	73	93.443	ENSEEUG00000003159	SF3A1	82	93.443	Erinaceus_europaeus
ENSLACG00000003565	SF3A1	100	83.480	ENSELUG00000022578	sf3a1	100	82.174	Esox_lucius
ENSLACG00000003565	SF3A1	97	88.281	ENSFCAG00000011932	SF3A1	100	87.077	Felis_catus
ENSLACG00000003565	SF3A1	96	85.997	ENSFALG00000006944	SF3A1	100	84.257	Ficedula_albicollis
ENSLACG00000003565	SF3A1	97	88.151	ENSFDAG00000009560	SF3A1	100	86.826	Fukomys_damarensis
ENSLACG00000003565	SF3A1	100	84.304	ENSFHEG00000010866	sf3a1	100	84.051	Fundulus_heteroclitus
ENSLACG00000003565	SF3A1	100	81.496	ENSGMOG00000016024	sf3a1	100	80.377	Gadus_morhua
ENSLACG00000003565	SF3A1	96	88.391	ENSGALG00000007937	SF3A1	100	85.390	Gallus_gallus
ENSLACG00000003565	SF3A1	100	83.165	ENSGAFG00000009111	sf3a1	100	82.868	Gambusia_affinis
ENSLACG00000003565	SF3A1	100	81.439	ENSGACG00000011893	sf3a1	100	81.486	Gasterosteus_aculeatus
ENSLACG00000003565	SF3A1	96	83.947	ENSGAGG00000000762	SF3A1	99	85.132	Gopherus_agassizii
ENSLACG00000003565	SF3A1	97	88.672	ENSGGOG00000012631	SF3A1	100	86.517	Gorilla_gorilla
ENSLACG00000003565	SF3A1	100	83.671	ENSHBUG00000015795	sf3a1	100	83.671	Haplochromis_burtoni
ENSLACG00000003565	SF3A1	97	88.411	ENSHGLG00000007907	SF3A1	100	87.077	Heterocephalus_glaber_female
ENSLACG00000003565	SF3A1	97	88.411	ENSHGLG00100013799	SF3A1	100	87.077	Heterocephalus_glaber_male
ENSLACG00000003565	SF3A1	100	81.899	ENSHCOG00000015423	sf3a1	100	80.832	Hippocampus_comes
ENSLACG00000003565	SF3A1	97	82.558	ENSIPUG00000002470	sf3a1	99	82.817	Ictalurus_punctatus
ENSLACG00000003565	SF3A1	99	87.229	ENSSTOG00000013892	SF3A1	100	86.859	Ictidomys_tridecemlineatus
ENSLACG00000003565	SF3A1	97	88.411	ENSJJAG00000022566	Sf3a1	100	86.967	Jaculus_jaculus
ENSLACG00000003565	SF3A1	100	82.828	ENSKMAG00000002400	sf3a1	100	82.933	Kryptolebias_marmoratus
ENSLACG00000003565	SF3A1	100	82.278	ENSLBEG00000022974	sf3a1	100	82.129	Labrus_bergylta
ENSLACG00000003565	SF3A1	100	83.899	ENSLOCG00000008251	sf3a1	99	84.780	Lepisosteus_oculatus
ENSLACG00000003565	SF3A1	97	58.625	ENSLAFG00000026032	-	97	57.642	Loxodonta_africana
ENSLACG00000003565	SF3A1	97	88.021	ENSLAFG00000000448	SF3A1	100	86.826	Loxodonta_africana
ENSLACG00000003565	SF3A1	97	88.411	ENSMFAG00000031979	SF3A1	100	86.951	Macaca_fascicularis
ENSLACG00000003565	SF3A1	97	88.411	ENSMMUG00000005547	SF3A1	100	86.951	Macaca_mulatta
ENSLACG00000003565	SF3A1	97	88.281	ENSMNEG00000037229	SF3A1	100	86.826	Macaca_nemestrina
ENSLACG00000003565	SF3A1	97	88.281	ENSMLEG00000041908	SF3A1	100	87.077	Mandrillus_leucophaeus
ENSLACG00000003565	SF3A1	99	84.478	ENSMAMG00000006460	sf3a1	98	83.929	Mastacembelus_armatus
ENSLACG00000003565	SF3A1	100	82.911	ENSMZEG00005009633	sf3a1	100	83.671	Maylandia_zebra
ENSLACG00000003565	SF3A1	96	88.391	ENSMGAG00000001330	SF3A1	99	86.623	Meleagris_gallopavo
ENSLACG00000003565	SF3A1	93	84.647	ENSMAUG00000020317	Sf3a1	100	81.234	Mesocricetus_auratus
ENSLACG00000003565	SF3A1	97	88.136	ENSMICG00000010038	SF3A1	100	86.935	Microcebus_murinus
ENSLACG00000003565	SF3A1	97	88.411	ENSMOCG00000008438	Sf3a1	100	87.327	Microtus_ochrogaster
ENSLACG00000003565	SF3A1	100	81.622	ENSMMOG00000015588	sf3a1	99	80.862	Mola_mola
ENSLACG00000003565	SF3A1	97	88.411	ENSMODG00000009270	SF3A1	100	85.678	Monodelphis_domestica
ENSLACG00000003565	SF3A1	100	84.324	ENSMALG00000000148	sf3a1	99	85.598	Monopterus_albus
ENSLACG00000003565	SF3A1	97	88.411	MGP_CAROLIEiJ_G0016029	Sf3a1	100	86.951	Mus_caroli
ENSLACG00000003565	SF3A1	97	88.411	ENSMUSG00000002129	Sf3a1	100	86.951	Mus_musculus
ENSLACG00000003565	SF3A1	97	88.281	MGP_PahariEiJ_G0016862	Sf3a1	100	86.826	Mus_pahari
ENSLACG00000003565	SF3A1	97	88.411	MGP_SPRETEiJ_G0016870	Sf3a1	100	86.951	Mus_spretus
ENSLACG00000003565	SF3A1	97	88.281	ENSMPUG00000013144	SF3A1	100	86.826	Mustela_putorius_furo
ENSLACG00000003565	SF3A1	97	88.411	ENSMLUG00000002139	SF3A1	100	87.202	Myotis_lucifugus
ENSLACG00000003565	SF3A1	97	88.672	ENSNGAG00000016977	Sf3a1	100	87.202	Nannospalax_galili
ENSLACG00000003565	SF3A1	100	83.418	ENSNBRG00000016642	sf3a1	100	83.418	Neolamprologus_brichardi
ENSLACG00000003565	SF3A1	97	88.281	ENSNLEG00000003686	SF3A1	100	87.077	Nomascus_leucogenys
ENSLACG00000003565	SF3A1	95	79.706	ENSMEUG00000008741	SF3A1	100	78.740	Notamacropus_eugenii
ENSLACG00000003565	SF3A1	97	88.021	ENSOPRG00000016636	SF3A1	100	86.700	Ochotona_princeps
ENSLACG00000003565	SF3A1	97	88.411	ENSODEG00000002571	SF3A1	100	87.186	Octodon_degus
ENSLACG00000003565	SF3A1	100	83.418	ENSONIG00000010848	sf3a1	100	83.418	Oreochromis_niloticus
ENSLACG00000003565	SF3A1	97	88.151	ENSOCUG00000007633	SF3A1	100	86.951	Oryctolagus_cuniculus
ENSLACG00000003565	SF3A1	96	82.959	ENSORLG00000013050	sf3a1	99	82.695	Oryzias_latipes
ENSLACG00000003565	SF3A1	99	81.552	ENSORLG00020003236	sf3a1	97	81.525	Oryzias_latipes_hni
ENSLACG00000003565	SF3A1	100	83.291	ENSORLG00015017411	sf3a1	100	83.165	Oryzias_latipes_hsok
ENSLACG00000003565	SF3A1	100	83.565	ENSOMEG00000013362	sf3a1	100	82.532	Oryzias_melastigma
ENSLACG00000003565	SF3A1	97	88.021	ENSOGAG00000012931	SF3A1	100	86.700	Otolemur_garnettii
ENSLACG00000003565	SF3A1	97	86.458	ENSOARG00000006849	SF3A1	100	83.940	Ovis_aries
ENSLACG00000003565	SF3A1	97	87.891	ENSPPAG00000041790	SF3A1	100	83.498	Pan_paniscus
ENSLACG00000003565	SF3A1	97	88.281	ENSPPRG00000004391	SF3A1	100	87.077	Panthera_pardus
ENSLACG00000003565	SF3A1	97	88.151	ENSPTIG00000000844	SF3A1	99	88.411	Panthera_tigris_altaica
ENSLACG00000003565	SF3A1	97	88.672	ENSPTRG00000014240	SF3A1	100	86.517	Pan_troglodytes
ENSLACG00000003565	SF3A1	97	88.281	ENSPANG00000020772	SF3A1	100	87.077	Papio_anubis
ENSLACG00000003565	SF3A1	82	93.407	ENSPSIG00000012803	SF3A1	95	93.407	Pelodiscus_sinensis
ENSLACG00000003565	SF3A1	97	83.137	ENSPMGG00000023096	sf3a1	100	82.484	Periophthalmus_magnuspinnatus
ENSLACG00000003565	SF3A1	96	88.583	ENSPEMG00000009494	Sf3a1	100	87.327	Peromyscus_maniculatus_bairdii
ENSLACG00000003565	SF3A1	69	76.867	ENSPMAG00000007139	-	93	77.697	Petromyzon_marinus
ENSLACG00000003565	SF3A1	99	86.957	ENSPCIG00000022692	SF3A1	100	85.176	Phascolarctos_cinereus
ENSLACG00000003565	SF3A1	100	74.746	ENSPFOG00000016768	sf3a1	100	74.365	Poecilia_formosa
ENSLACG00000003565	SF3A1	100	84.177	ENSPLAG00000017268	sf3a1	100	83.544	Poecilia_latipinna
ENSLACG00000003565	SF3A1	97	84.084	ENSPMEG00000019811	sf3a1	100	83.784	Poecilia_mexicana
ENSLACG00000003565	SF3A1	100	84.177	ENSPREG00000010347	sf3a1	100	83.671	Poecilia_reticulata
ENSLACG00000003565	SF3A1	97	88.281	ENSPPYG00000011707	SF3A1	100	87.077	Pongo_abelii
ENSLACG00000003565	SF3A1	57	88.843	ENSPCAG00000003266	SF3A1	57	86.603	Procavia_capensis
ENSLACG00000003565	SF3A1	97	88.396	ENSPCOG00000026630	SF3A1	100	87.186	Propithecus_coquereli
ENSLACG00000003565	SF3A1	95	87.316	ENSPVAG00000017719	SF3A1	94	87.583	Pteropus_vampyrus
ENSLACG00000003565	SF3A1	100	83.671	ENSPNYG00000018706	sf3a1	100	83.671	Pundamilia_nyererei
ENSLACG00000003565	SF3A1	99	83.165	ENSPNAG00000003721	sf3a1	99	83.544	Pygocentrus_nattereri
ENSLACG00000003565	SF3A1	97	88.411	ENSRNOG00000005218	Sf3a1	100	86.951	Rattus_norvegicus
ENSLACG00000003565	SF3A1	97	88.281	ENSRBIG00000032167	SF3A1	100	87.077	Rhinopithecus_bieti
ENSLACG00000003565	SF3A1	97	88.281	ENSRROG00000044908	SF3A1	100	87.077	Rhinopithecus_roxellana
ENSLACG00000003565	SF3A1	93	88.195	ENSSBOG00000021960	SF3A1	98	88.756	Saimiri_boliviensis_boliviensis
ENSLACG00000003565	SF3A1	100	84.071	ENSSHAG00000003666	SF3A1	99	82.554	Sarcophilus_harrisii
ENSLACG00000003565	SF3A1	100	84.025	ENSSFOG00015004579	sf3a1	100	83.774	Scleropages_formosus
ENSLACG00000003565	SF3A1	100	80.633	ENSSMAG00000004275	sf3a1	100	81.242	Scophthalmus_maximus
ENSLACG00000003565	SF3A1	100	84.177	ENSSDUG00000022219	sf3a1	100	83.418	Seriola_dumerili
ENSLACG00000003565	SF3A1	100	84.177	ENSSLDG00000012642	sf3a1	100	83.418	Seriola_lalandi_dorsalis
ENSLACG00000003565	SF3A1	97	85.677	ENSSARG00000005960	SF3A1	99	85.547	Sorex_araneus
ENSLACG00000003565	SF3A1	96	86.364	ENSSPUG00000018863	SF3A1	100	84.558	Sphenodon_punctatus
ENSLACG00000003565	SF3A1	100	83.924	ENSSPAG00000011856	sf3a1	100	83.924	Stegastes_partitus
ENSLACG00000003565	SF3A1	97	88.411	ENSSSCG00000010002	SF3A1	100	86.951	Sus_scrofa
ENSLACG00000003565	SF3A1	96	87.105	ENSTGUG00000010547	SF3A1	99	86.010	Taeniopygia_guttata
ENSLACG00000003565	SF3A1	100	80.862	ENSTRUG00000006118	sf3a1	100	81.091	Takifugu_rubripes
ENSLACG00000003565	SF3A1	57	82.784	ENSTNIG00000005713	sf3a1	89	84.821	Tetraodon_nigroviridis
ENSLACG00000003565	SF3A1	97	81.510	ENSTBEG00000012771	SF3A1	100	80.678	Tupaia_belangeri
ENSLACG00000003565	SF3A1	97	88.036	ENSTTRG00000001535	SF3A1	100	86.717	Tursiops_truncatus
ENSLACG00000003565	SF3A1	99	86.094	ENSUAMG00000006750	SF3A1	99	86.220	Ursus_americanus
ENSLACG00000003565	SF3A1	100	86.233	ENSUMAG00000016665	SF3A1	98	88.120	Ursus_maritimus
ENSLACG00000003565	SF3A1	97	88.151	ENSVVUG00000003075	SF3A1	100	86.951	Vulpes_vulpes
ENSLACG00000003565	SF3A1	100	81.445	ENSXETG00000016144	sf3a1	96	86.585	Xenopus_tropicalis
ENSLACG00000003565	SF3A1	100	83.165	ENSXCOG00000015653	sf3a1	100	82.995	Xiphophorus_couchianus
ENSLACG00000003565	SF3A1	100	83.291	ENSXMAG00000002753	sf3a1	100	83.122	Xiphophorus_maculatus