EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000003588 (Gene tree)
Gene ID: 102349703
Gene Symbol: SCRT1
Alias: DKFZp547F072|ZNF898
Full Name: scratch family transcriptional repressor 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 2002 bases
Position: chrJH129608.1:88721-90722
Accession: 102349703
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000004030	zf-C2H2	PF00096.26	8.5e-26	1	4
ENSLACP00000004030	zf-C2H2	PF00096.26	8.5e-26	2	4
ENSLACP00000004030	zf-C2H2	PF00096.26	8.5e-26	3	4
ENSLACP00000004030	zf-C2H2	PF00096.26	8.5e-26	4	4
ENSLACP00000004030	zf-met	PF12874.7	3.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000004066	SCRT1-201	840	XM_006012027	ENSLACP00000004030	279 (aa)	XP_006012089	H3A309

Gene Model

Click here to download ENSLACG00000003588's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000003588's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000003588	SCRT1	95	40.146	ENSLACG00000017707	SNAI1	98	40.146
ENSLACG00000003588	SCRT1	53	44.595	ENSLACG00000012207	GFI1B	51	44.595
ENSLACG00000003588	SCRT1	52	37.037	ENSLACG00000013362	GFI1	97	37.037
ENSLACG00000003588	SCRT1	53	41.964	ENSLACG00000017381	-	71	41.964
ENSLACG00000003588	SCRT1	54	35.294	ENSLACG00000017590	-	51	35.294
ENSLACG00000003588	SCRT1	95	40.580	ENSLACG00000005413	snai2	99	41.667
ENSLACG00000003588	SCRT1	64	38.679	ENSLACG00000009642	-	99	38.679
ENSLACG00000003588	SCRT1	52	35.075	ENSLACG00000007310	-	99	35.075
ENSLACG00000003588	SCRT1	56	40.152	ENSLACG00000014708	-	59	40.152
ENSLACG00000003588	SCRT1	51	34.307	ENSLACG00000009005	-	99	37.736
ENSLACG00000003588	SCRT1	57	33.663	ENSLACG00000010025	ZNF581	90	33.663
ENSLACG00000003588	SCRT1	57	37.879	ENSLACG00000005264	-	97	37.879
ENSLACG00000003588	SCRT1	69	37.313	ENSLACG00000022211	-	78	37.313
ENSLACG00000003588	SCRT1	57	37.500	ENSLACG00000009187	PRDM5	88	37.500
ENSLACG00000003588	SCRT1	54	37.313	ENSLACG00000004191	-	70	37.313

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000003588	SCRT1	96	69.455	ENSAPOG00000003680	scrt2	96	69.455	Acanthochromis_polyacanthus
ENSLACG00000003588	SCRT1	99	77.113	ENSAPOG00000015197	-	99	77.113	Acanthochromis_polyacanthus
ENSLACG00000003588	SCRT1	99	85.765	ENSAPOG00000009279	scrt1b	100	85.765	Acanthochromis_polyacanthus
ENSLACG00000003588	SCRT1	96	57.333	ENSACIG00000001296	-	96	57.333	Amphilophus_citrinellus
ENSLACG00000003588	SCRT1	99	75.503	ENSACIG00000006586	-	99	75.503	Amphilophus_citrinellus
ENSLACG00000003588	SCRT1	96	68.841	ENSACIG00000012604	scrt2	96	68.841	Amphilophus_citrinellus
ENSLACG00000003588	SCRT1	99	82.624	ENSACIG00000013613	scrt1b	100	82.624	Amphilophus_citrinellus
ENSLACG00000003588	SCRT1	96	69.455	ENSAOCG00000021557	scrt2	96	69.455	Amphiprion_ocellaris
ENSLACG00000003588	SCRT1	99	75.839	ENSAOCG00000023304	-	99	75.839	Amphiprion_ocellaris
ENSLACG00000003588	SCRT1	99	85.409	ENSAOCG00000003910	scrt1b	100	85.409	Amphiprion_ocellaris
ENSLACG00000003588	SCRT1	99	75.839	ENSAPEG00000005677	-	99	75.839	Amphiprion_percula
ENSLACG00000003588	SCRT1	96	69.455	ENSAPEG00000022558	scrt2	96	69.455	Amphiprion_percula
ENSLACG00000003588	SCRT1	99	85.409	ENSAPEG00000000869	scrt1b	100	85.409	Amphiprion_percula
ENSLACG00000003588	SCRT1	99	76.408	ENSATEG00000011660	-	99	76.408	Anabas_testudineus
ENSLACG00000003588	SCRT1	99	85.409	ENSATEG00000002302	scrt1b	100	85.409	Anabas_testudineus
ENSLACG00000003588	SCRT1	96	66.667	ENSATEG00000023998	scrt2	97	66.667	Anabas_testudineus
ENSLACG00000003588	SCRT1	96	53.797	ENSATEG00000003195	-	97	53.797	Anabas_testudineus
ENSLACG00000003588	SCRT1	76	75.587	ENSACAG00000016109	SCRT2	95	75.587	Anolis_carolinensis
ENSLACG00000003588	SCRT1	99	84.698	ENSACLG00000007162	scrt1b	100	84.698	Astatotilapia_calliptera
ENSLACG00000003588	SCRT1	99	72.757	ENSACLG00000012046	-	99	72.757	Astatotilapia_calliptera
ENSLACG00000003588	SCRT1	98	81.522	ENSAMXG00000042624	SCRT1	99	81.522	Astyanax_mexicanus
ENSLACG00000003588	SCRT1	88	70.428	ENSAMXG00000034158	scrt2	92	70.428	Astyanax_mexicanus
ENSLACG00000003588	SCRT1	99	84.229	ENSAMXG00000038085	scrt1a	100	85.305	Astyanax_mexicanus
ENSLACG00000003588	SCRT1	58	62.346	WBGene00000468	ces-1	60	61.585	Caenorhabditis_elegans
ENSLACG00000003588	SCRT1	86	62.000	ENSCPBG00000027613	SCRT2	100	62.000	Chrysemys_picta_bellii
ENSLACG00000003588	SCRT1	99	88.849	ENSCPBG00000018899	SCRT1	99	88.849	Chrysemys_picta_bellii
ENSLACG00000003588	SCRT1	98	74.662	ENSCSEG00000014892	-	99	74.662	Cynoglossus_semilaevis
ENSLACG00000003588	SCRT1	96	67.327	ENSCSEG00000021542	scrt2	97	67.657	Cynoglossus_semilaevis
ENSLACG00000003588	SCRT1	99	84.698	ENSCSEG00000008596	scrt1b	100	84.698	Cynoglossus_semilaevis
ENSLACG00000003588	SCRT1	99	76.174	ENSCVAG00000003190	-	99	76.174	Cyprinodon_variegatus
ENSLACG00000003588	SCRT1	96	66.019	ENSCVAG00000021038	scrt2	97	66.019	Cyprinodon_variegatus
ENSLACG00000003588	SCRT1	99	84.342	ENSCVAG00000009561	scrt1b	100	84.342	Cyprinodon_variegatus
ENSLACG00000003588	SCRT1	99	87.455	ENSDARG00000100821	scrt1a	100	87.455	Danio_rerio
ENSLACG00000003588	SCRT1	99	87.814	ENSDARG00000040214	scrt1b	100	87.814	Danio_rerio
ENSLACG00000003588	SCRT1	96	66.554	ENSELUG00000023883	scrt2	96	65.815	Esox_lucius
ENSLACG00000003588	SCRT1	99	88.571	ENSELUG00000005435	scrt1b	100	88.571	Esox_lucius
ENSLACG00000003588	SCRT1	99	87.410	ENSELUG00000022228	scrt1a	99	87.410	Esox_lucius
ENSLACG00000003588	SCRT1	83	71.245	ENSFALG00000005718	SCRT2	97	71.245	Ficedula_albicollis
ENSLACG00000003588	SCRT1	96	62.222	ENSFDAG00000008733	SCRT1	97	62.731	Fukomys_damarensis
ENSLACG00000003588	SCRT1	96	72.101	ENSFHEG00000005732	scrt2	96	72.101	Fundulus_heteroclitus
ENSLACG00000003588	SCRT1	99	75.503	ENSFHEG00000009794	-	99	75.503	Fundulus_heteroclitus
ENSLACG00000003588	SCRT1	99	84.342	ENSFHEG00000014820	scrt1b	100	84.342	Fundulus_heteroclitus
ENSLACG00000003588	SCRT1	96	60.772	ENSGMOG00000019519	scrt2	96	60.772	Gadus_morhua
ENSLACG00000003588	SCRT1	99	83.929	ENSGMOG00000000629	scrt1b	100	83.929	Gadus_morhua
ENSLACG00000003588	SCRT1	96	64.835	ENSGALG00000028912	SCRT2	97	64.835	Gallus_gallus
ENSLACG00000003588	SCRT1	99	75.177	ENSGAFG00000009650	-	99	75.177	Gambusia_affinis
ENSLACG00000003588	SCRT1	99	83.986	ENSGAFG00000007636	scrt1b	100	83.986	Gambusia_affinis
ENSLACG00000003588	SCRT1	96	67.340	ENSGAFG00000003093	scrt2	97	67.340	Gambusia_affinis
ENSLACG00000003588	SCRT1	99	82.374	ENSGACG00000008982	scrt1b	99	82.374	Gasterosteus_aculeatus
ENSLACG00000003588	SCRT1	99	75.170	ENSGACG00000004072	-	99	75.170	Gasterosteus_aculeatus
ENSLACG00000003588	SCRT1	99	89.855	ENSGAGG00000011736	SCRT1	100	89.855	Gopherus_agassizii
ENSLACG00000003588	SCRT1	63	82.386	ENSGAGG00000020760	-	68	82.386	Gopherus_agassizii
ENSLACG00000003588	SCRT1	96	65.314	ENSGAGG00000020761	SCRT2	96	65.314	Gopherus_agassizii
ENSLACG00000003588	SCRT1	99	84.698	ENSHBUG00000016621	scrt1b	100	84.698	Haplochromis_burtoni
ENSLACG00000003588	SCRT1	99	75.168	ENSHBUG00000019101	-	99	75.168	Haplochromis_burtoni
ENSLACG00000003588	SCRT1	96	69.455	ENSHBUG00000012492	scrt2	96	69.455	Haplochromis_burtoni
ENSLACG00000003588	SCRT1	96	67.123	ENSHCOG00000008116	scrt2	97	67.123	Hippocampus_comes
ENSLACG00000003588	SCRT1	99	83.630	ENSHCOG00000016704	scrt1b	100	83.630	Hippocampus_comes
ENSLACG00000003588	SCRT1	99	68.966	ENSHCOG00000016179	-	99	69.310	Hippocampus_comes
ENSLACG00000003588	SCRT1	99	85.612	ENSIPUG00000004551	scrt1a	99	85.612	Ictalurus_punctatus
ENSLACG00000003588	SCRT1	98	76.277	ENSIPUG00000005547	-	99	76.277	Ictalurus_punctatus
ENSLACG00000003588	SCRT1	51	83.688	ENSSTOG00000032944	SCRT2	82	81.699	Ictidomys_tridecemlineatus
ENSLACG00000003588	SCRT1	99	73.244	ENSKMAG00000009489	-	99	74.916	Kryptolebias_marmoratus
ENSLACG00000003588	SCRT1	96	66.667	ENSKMAG00000018087	scrt2	97	66.667	Kryptolebias_marmoratus
ENSLACG00000003588	SCRT1	99	84.342	ENSKMAG00000005484	scrt1b	100	84.342	Kryptolebias_marmoratus
ENSLACG00000003588	SCRT1	99	73.064	ENSLBEG00000023388	-	99	74.074	Labrus_bergylta
ENSLACG00000003588	SCRT1	96	66.129	ENSLBEG00000015419	scrt2	97	66.129	Labrus_bergylta
ENSLACG00000003588	SCRT1	99	91.756	ENSLOCG00000007573	scrt1b	100	91.756	Lepisosteus_oculatus
ENSLACG00000003588	SCRT1	96	54.045	ENSLOCG00000002246	scrt2	97	54.045	Lepisosteus_oculatus
ENSLACG00000003588	SCRT1	96	66.343	ENSMAMG00000001291	scrt2	97	66.343	Mastacembelus_armatus
ENSLACG00000003588	SCRT1	99	84.698	ENSMAMG00000011698	scrt1b	100	84.698	Mastacembelus_armatus
ENSLACG00000003588	SCRT1	96	69.455	ENSMZEG00005026445	scrt2	96	69.455	Maylandia_zebra
ENSLACG00000003588	SCRT1	99	75.168	ENSMZEG00005026702	-	99	75.168	Maylandia_zebra
ENSLACG00000003588	SCRT1	99	84.698	ENSMZEG00005005627	scrt1b	100	84.698	Maylandia_zebra
ENSLACG00000003588	SCRT1	83	70.690	ENSMGAG00000016579	SCRT2	97	70.690	Meleagris_gallopavo
ENSLACG00000003588	SCRT1	96	66.667	ENSMMOG00000009272	scrt2	97	66.993	Mola_mola
ENSLACG00000003588	SCRT1	99	74.832	ENSMMOG00000018345	-	99	74.832	Mola_mola
ENSLACG00000003588	SCRT1	99	83.630	ENSMMOG00000003327	scrt1b	100	83.630	Mola_mola
ENSLACG00000003588	SCRT1	96	68.345	ENSMALG00000013656	scrt2	96	68.345	Monopterus_albus
ENSLACG00000003588	SCRT1	99	85.053	ENSMALG00000012704	scrt1b	100	85.053	Monopterus_albus
ENSLACG00000003588	SCRT1	51	83.688	ENSNGAG00000020815	Scrt2	71	82.877	Nannospalax_galili
ENSLACG00000003588	SCRT1	99	82.206	ENSNBRG00000013983	scrt1b	100	82.206	Neolamprologus_brichardi
ENSLACG00000003588	SCRT1	99	74.832	ENSNBRG00000014882	-	99	74.832	Neolamprologus_brichardi
ENSLACG00000003588	SCRT1	96	69.091	ENSNBRG00000007221	scrt2	96	69.091	Neolamprologus_brichardi
ENSLACG00000003588	SCRT1	96	66.343	ENSONIG00000016758	scrt2	97	66.343	Oreochromis_niloticus
ENSLACG00000003588	SCRT1	96	71.569	ENSONIG00000019809	-	100	71.569	Oreochromis_niloticus
ENSLACG00000003588	SCRT1	96	61.594	ENSONIG00000003152	-	96	61.594	Oreochromis_niloticus
ENSLACG00000003588	SCRT1	99	83.986	ENSONIG00000006007	scrt1b	100	83.986	Oreochromis_niloticus
ENSLACG00000003588	SCRT1	96	67.314	ENSORLG00000024051	scrt2	97	67.314	Oryzias_latipes
ENSLACG00000003588	SCRT1	99	83.986	ENSORLG00000025651	scrt1b	100	83.986	Oryzias_latipes
ENSLACG00000003588	SCRT1	99	73.510	ENSORLG00000022825	-	99	73.510	Oryzias_latipes
ENSLACG00000003588	SCRT1	99	83.986	ENSORLG00020012967	scrt1b	100	83.986	Oryzias_latipes_hni
ENSLACG00000003588	SCRT1	96	67.314	ENSORLG00020011478	scrt2	97	67.314	Oryzias_latipes_hni
ENSLACG00000003588	SCRT1	99	83.986	ENSORLG00015019165	scrt1b	100	83.986	Oryzias_latipes_hsok
ENSLACG00000003588	SCRT1	96	67.314	ENSORLG00015005524	scrt2	97	67.314	Oryzias_latipes_hsok
ENSLACG00000003588	SCRT1	99	73.179	ENSORLG00015010104	-	99	73.179	Oryzias_latipes_hsok
ENSLACG00000003588	SCRT1	99	75.585	ENSOMEG00000000286	-	99	75.585	Oryzias_melastigma
ENSLACG00000003588	SCRT1	96	66.990	ENSOMEG00000002661	scrt2	97	66.990	Oryzias_melastigma
ENSLACG00000003588	SCRT1	99	83.986	ENSOMEG00000003925	scrt1b	100	83.986	Oryzias_melastigma
ENSLACG00000003588	SCRT1	99	90.681	ENSPKIG00000022303	SCRT1	100	90.681	Paramormyrops_kingsleyae
ENSLACG00000003588	SCRT1	99	90.681	ENSPKIG00000020085	scrt1a	100	90.681	Paramormyrops_kingsleyae
ENSLACG00000003588	SCRT1	99	75.427	ENSPMGG00000021402	-	99	75.427	Periophthalmus_magnuspinnatus
ENSLACG00000003588	SCRT1	99	83.214	ENSPMGG00000002260	scrt1b	100	83.214	Periophthalmus_magnuspinnatus
ENSLACG00000003588	SCRT1	96	72.924	ENSPMGG00000016561	scrt2	96	72.924	Periophthalmus_magnuspinnatus
ENSLACG00000003588	SCRT1	99	75.084	ENSPFOG00000005616	-	99	75.084	Poecilia_formosa
ENSLACG00000003588	SCRT1	96	66.343	ENSPFOG00000007738	scrt2	97	66.343	Poecilia_formosa
ENSLACG00000003588	SCRT1	99	83.986	ENSPFOG00000017719	scrt1b	100	83.986	Poecilia_formosa
ENSLACG00000003588	SCRT1	96	71.480	ENSPLAG00000005765	scrt2	96	71.480	Poecilia_latipinna
ENSLACG00000003588	SCRT1	99	83.986	ENSPLAG00000009876	scrt1b	100	83.986	Poecilia_latipinna
ENSLACG00000003588	SCRT1	99	75.084	ENSPLAG00000011718	-	99	75.084	Poecilia_latipinna
ENSLACG00000003588	SCRT1	99	75.084	ENSPMEG00000011706	-	99	75.084	Poecilia_mexicana
ENSLACG00000003588	SCRT1	99	83.986	ENSPMEG00000013274	scrt1b	100	83.986	Poecilia_mexicana
ENSLACG00000003588	SCRT1	96	71.480	ENSPMEG00000001538	scrt2	96	71.480	Poecilia_mexicana
ENSLACG00000003588	SCRT1	99	83.986	ENSPREG00000018985	scrt1b	100	83.986	Poecilia_reticulata
ENSLACG00000003588	SCRT1	96	66.343	ENSPREG00000001147	scrt2	97	66.343	Poecilia_reticulata
ENSLACG00000003588	SCRT1	99	74.411	ENSPREG00000012166	-	99	74.411	Poecilia_reticulata
ENSLACG00000003588	SCRT1	99	75.168	ENSPNYG00000008865	-	99	75.168	Pundamilia_nyererei
ENSLACG00000003588	SCRT1	96	69.455	ENSPNYG00000013109	scrt2	96	69.455	Pundamilia_nyererei
ENSLACG00000003588	SCRT1	99	84.698	ENSPNYG00000017733	scrt1b	100	84.698	Pundamilia_nyererei
ENSLACG00000003588	SCRT1	99	81.786	ENSPNAG00000027880	-	99	82.182	Pygocentrus_nattereri
ENSLACG00000003588	SCRT1	99	87.097	ENSPNAG00000017415	scrt1a	100	87.097	Pygocentrus_nattereri
ENSLACG00000003588	SCRT1	99	88.530	ENSSFOG00015001195	SCRT1	100	88.530	Scleropages_formosus
ENSLACG00000003588	SCRT1	99	74.000	ENSSMAG00000005122	-	99	74.000	Scophthalmus_maximus
ENSLACG00000003588	SCRT1	99	83.929	ENSSMAG00000019207	scrt1b	99	83.929	Scophthalmus_maximus
ENSLACG00000003588	SCRT1	97	66.330	ENSSDUG00000001637	scrt2	96	66.330	Seriola_dumerili
ENSLACG00000003588	SCRT1	99	85.053	ENSSDUG00000007752	scrt1b	100	85.053	Seriola_dumerili
ENSLACG00000003588	SCRT1	99	75.839	ENSSDUG00000013215	-	99	75.839	Seriola_dumerili
ENSLACG00000003588	SCRT1	96	66.343	ENSSLDG00000013565	scrt2	97	66.343	Seriola_lalandi_dorsalis
ENSLACG00000003588	SCRT1	99	75.839	ENSSLDG00000016454	-	99	75.839	Seriola_lalandi_dorsalis
ENSLACG00000003588	SCRT1	99	85.053	ENSSLDG00000017166	scrt1b	100	85.053	Seriola_lalandi_dorsalis
ENSLACG00000003588	SCRT1	96	66.790	ENSSPUG00000018637	SCRT2	97	66.790	Sphenodon_punctatus
ENSLACG00000003588	SCRT1	96	69.818	ENSSPAG00000014018	scrt2	96	69.818	Stegastes_partitus
ENSLACG00000003588	SCRT1	99	74.832	ENSSPAG00000006788	-	99	76.510	Stegastes_partitus
ENSLACG00000003588	SCRT1	99	85.053	ENSSPAG00000002200	scrt1b	100	85.053	Stegastes_partitus
ENSLACG00000003588	SCRT1	83	71.121	ENSTGUG00000006801	SCRT2	99	71.121	Taeniopygia_guttata
ENSLACG00000003588	SCRT1	90	75.781	ENSTRUG00000019558	-	85	75.781	Takifugu_rubripes
ENSLACG00000003588	SCRT1	99	75.421	ENSTRUG00000012719	-	99	75.421	Takifugu_rubripes
ENSLACG00000003588	SCRT1	99	83.274	ENSTRUG00000011637	scrt1b	100	83.274	Takifugu_rubripes
ENSLACG00000003588	SCRT1	96	67.698	ENSTRUG00000007620	scrt2	97	67.698	Takifugu_rubripes
ENSLACG00000003588	SCRT1	99	83.274	ENSTNIG00000018384	scrt1b	100	83.274	Tetraodon_nigroviridis
ENSLACG00000003588	SCRT1	96	72.760	ENSTNIG00000012473	scrt2	97	72.760	Tetraodon_nigroviridis
ENSLACG00000003588	SCRT1	99	83.986	ENSXCOG00000019675	scrt1b	100	83.986	Xiphophorus_couchianus
ENSLACG00000003588	SCRT1	96	67.677	ENSXCOG00000014367	scrt2	97	67.677	Xiphophorus_couchianus
ENSLACG00000003588	SCRT1	99	74.113	ENSXCOG00000019861	-	99	74.113	Xiphophorus_couchianus
ENSLACG00000003588	SCRT1	96	66.343	ENSXMAG00000028567	scrt2	97	66.343	Xiphophorus_maculatus
ENSLACG00000003588	SCRT1	99	73.986	ENSXMAG00000015353	-	99	73.986	Xiphophorus_maculatus
ENSLACG00000003588	SCRT1	99	83.986	ENSXMAG00000027885	scrt1b	100	83.986	Xiphophorus_maculatus