EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000003806 (Gene tree)
Gene ID: 102355015
Gene Symbol: ZC3H13
Alias: DKFZp434D1812|KIAA0853|Xio
Full Name: zinc finger CCCH-type containing 13
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 71415 bases
Position: chrJH129703.1:97646-169060
Accession: 102355015
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000004275	zf-CCCH	PF00642.24	0.00011	1	1
ENSLACP00000023364	zf-CCCH	PF00642.24	0.00013	1	1
ENSLACP00000004274	zf-CCCH	PF00642.24	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000004312	ZC3H13-201	10414	XM_006012192	ENSLACP00000004274	1785 (aa)	XP_006012254	H3A3Q3
ENSLACT00000004313	ZC3H13-203	4791	-	ENSLACP00000004275	1596 (aa)	-	H3A3Q4
ENSLACT00000025905	ZC3H13-202	5958	XM_014498444	ENSLACP00000023364	1738 (aa)	XP_014353930	M3XKV8

Gene Model

Click here to download ENSLACG00000003806's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000003806's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000003806	ZC3H13	58	63.739	ENSG00000123200	ZC3H13	98	84.071	Homo_sapiens
ENSLACG00000003806	ZC3H13	58	62.093	ENSAMEG00000013117	ZC3H13	62	66.337	Ailuropoda_melanoleuca
ENSLACG00000003806	ZC3H13	97	69.771	ENSAPLG00000002707	ZC3H13	67	70.312	Anas_platyrhynchos
ENSLACG00000003806	ZC3H13	58	63.598	ENSANAG00000033079	ZC3H13	51	61.055	Aotus_nancymaae
ENSLACG00000003806	ZC3H13	58	63.598	ENSCJAG00000016756	ZC3H13	51	60.652	Callithrix_jacchus
ENSLACG00000003806	ZC3H13	57	62.235	ENSCAFG00000004511	ZC3H13	62	66.337	Canis_familiaris
ENSLACG00000003806	ZC3H13	57	62.235	ENSCAFG00020019269	ZC3H13	99	74.118	Canis_lupus_dingo
ENSLACG00000003806	ZC3H13	57	69.178	ENSCHIG00000020072	ZC3H13	63	66.761	Capra_hircus
ENSLACG00000003806	ZC3H13	58	63.508	ENSTSYG00000000992	ZC3H13	51	59.601	Carlito_syrichta
ENSLACG00000003806	ZC3H13	57	64.590	ENSCPOG00000000646	ZC3H13	62	66.714	Cavia_porcellus
ENSLACG00000003806	ZC3H13	58	58.407	ENSCCAG00000032728	ZC3H13	61	61.055	Cebus_capucinus
ENSLACG00000003806	ZC3H13	58	63.739	ENSCATG00000041075	ZC3H13	51	60.553	Cercocebus_atys
ENSLACG00000003806	ZC3H13	58	63.598	ENSCLAG00000000610	ZC3H13	63	66.997	Chinchilla_lanigera
ENSLACG00000003806	ZC3H13	58	63.881	ENSCSAG00000017764	ZC3H13	51	60.150	Chlorocebus_sabaeus
ENSLACG00000003806	ZC3H13	86	82.301	ENSCHOG00000009724	ZC3H13	70	82.301	Choloepus_hoffmanni
ENSLACG00000003806	ZC3H13	58	63.739	ENSCANG00000037422	ZC3H13	51	60.302	Colobus_angolensis_palliatus
ENSLACG00000003806	ZC3H13	57	66.436	ENSDNOG00000005390	ZC3H13	62	66.051	Dasypus_novemcinctus
ENSLACG00000003806	ZC3H13	57	64.918	ENSDORG00000000600	Zc3h13	61	64.723	Dipodomys_ordii
ENSLACG00000003806	ZC3H13	56	69.853	ENSEASG00005017100	ZC3H13	62	67.610	Equus_asinus_asinus
ENSLACG00000003806	ZC3H13	56	69.853	ENSECAG00000022843	ZC3H13	87	59.859	Equus_caballus
ENSLACG00000003806	ZC3H13	57	62.093	ENSFCAG00000004877	ZC3H13	64	66.179	Felis_catus
ENSLACG00000003806	ZC3H13	58	75.847	ENSFALG00000008196	ZC3H13	70	76.130	Ficedula_albicollis
ENSLACG00000003806	ZC3H13	57	66.013	ENSFDAG00000012323	ZC3H13	63	65.090	Fukomys_damarensis
ENSLACG00000003806	ZC3H13	58	76.836	ENSGALG00000016984	ZC3H13	66	77.260	Gallus_gallus
ENSLACG00000003806	ZC3H13	51	52.045	ENSGACG00000015166	zc3h13	55	61.066	Gasterosteus_aculeatus
ENSLACG00000003806	ZC3H13	57	65.993	ENSGGOG00000005496	ZC3H13	62	66.714	Gorilla_gorilla
ENSLACG00000003806	ZC3H13	57	64.918	ENSHGLG00000006309	ZC3H13	62	66.006	Heterocephalus_glaber_female
ENSLACG00000003806	ZC3H13	57	64.918	ENSHGLG00100007460	ZC3H13	65	66.289	Heterocephalus_glaber_male
ENSLACG00000003806	ZC3H13	58	63.598	ENSSTOG00000029682	ZC3H13	61	66.714	Ictidomys_tridecemlineatus
ENSLACG00000003806	ZC3H13	58	62.040	ENSJJAG00000019971	Zc3h13	63	65.864	Jaculus_jaculus
ENSLACG00000003806	ZC3H13	58	66.063	ENSKMAG00000010701	zc3h13	57	60.000	Kryptolebias_marmoratus
ENSLACG00000003806	ZC3H13	58	63.881	ENSMFAG00000004060	ZC3H13	51	60.302	Macaca_fascicularis
ENSLACG00000003806	ZC3H13	58	63.881	ENSMMUG00000017025	ZC3H13	89	62.181	Macaca_mulatta
ENSLACG00000003806	ZC3H13	58	63.881	ENSMNEG00000044356	ZC3H13	51	60.302	Macaca_nemestrina
ENSLACG00000003806	ZC3H13	75	62.261	ENSMLEG00000039387	ZC3H13	69	81.673	Mandrillus_leucophaeus
ENSLACG00000003806	ZC3H13	52	62.445	ENSMAMG00000022274	zc3h13	57	62.140	Mastacembelus_armatus
ENSLACG00000003806	ZC3H13	58	67.989	ENSMGAG00000014996	ZC3H13	64	70.680	Meleagris_gallopavo
ENSLACG00000003806	ZC3H13	58	63.105	ENSMICG00000014772	ZC3H13	62	65.954	Microcebus_murinus
ENSLACG00000003806	ZC3H13	58	73.056	ENSMODG00000014969	ZC3H13	70	73.333	Monodelphis_domestica
ENSLACG00000003806	ZC3H13	51	60.175	ENSMUSG00000022000	Zc3h13	78	62.369	Mus_musculus
ENSLACG00000003806	ZC3H13	51	60.351	MGP_SPRETEiJ_G0020407	Zc3h13	78	62.544	Mus_spretus
ENSLACG00000003806	ZC3H13	55	62.958	ENSMPUG00000001602	ZC3H13	60	66.618	Mustela_putorius_furo
ENSLACG00000003806	ZC3H13	58	62.181	ENSNGAG00000002157	Zc3h13	51	56.206	Nannospalax_galili
ENSLACG00000003806	ZC3H13	58	63.598	ENSNLEG00000002498	ZC3H13	62	66.572	Nomascus_leucogenys
ENSLACG00000003806	ZC3H13	57	65.574	ENSODEG00000005178	ZC3H13	66	66.950	Octodon_degus
ENSLACG00000003806	ZC3H13	57	69.082	ENSONIG00000012236	zc3h13	55	68.493	Oreochromis_niloticus
ENSLACG00000003806	ZC3H13	58	67.705	ENSOANG00000015580	ZC3H13	64	70.839	Ornithorhynchus_anatinus
ENSLACG00000003806	ZC3H13	57	64.356	ENSOCUG00000015173	ZC3H13	62	65.771	Oryctolagus_cuniculus
ENSLACG00000003806	ZC3H13	61	43.945	ENSORLG00000005201	zc3h13	53	66.827	Oryzias_latipes
ENSLACG00000003806	ZC3H13	57	65.789	ENSOGAG00000012032	ZC3H13	51	60.459	Otolemur_garnettii
ENSLACG00000003806	ZC3H13	57	69.521	ENSOARG00000007790	ZC3H13	63	66.902	Ovis_aries
ENSLACG00000003806	ZC3H13	58	63.739	ENSPPAG00000034465	ZC3H13	63	66.714	Pan_paniscus
ENSLACG00000003806	ZC3H13	56	69.004	ENSPPRG00000005440	ZC3H13	62	66.054	Panthera_pardus
ENSLACG00000003806	ZC3H13	58	63.739	ENSPTRG00000005851	ZC3H13	62	66.714	Pan_troglodytes
ENSLACG00000003806	ZC3H13	57	66.781	ENSPANG00000014127	ZC3H13	90	66.147	Papio_anubis
ENSLACG00000003806	ZC3H13	59	78.049	ENSPKIG00000019756	zc3h13	50	62.745	Paramormyrops_kingsleyae
ENSLACG00000003806	ZC3H13	52	69.266	ENSPSIG00000012518	ZC3H13	94	83.140	Pelodiscus_sinensis
ENSLACG00000003806	ZC3H13	64	84.038	ENSPCIG00000029529	ZC3H13	70	73.766	Phascolarctos_cinereus
ENSLACG00000003806	ZC3H13	55	63.374	ENSPFOG00000005039	zc3h13	56	63.374	Poecilia_formosa
ENSLACG00000003806	ZC3H13	54	63.786	ENSPMEG00000006928	zc3h13	53	63.786	Poecilia_mexicana
ENSLACG00000003806	ZC3H13	76	78.543	ENSPCAG00000001146	ZC3H13	66	78.543	Procavia_capensis
ENSLACG00000003806	ZC3H13	69	86.486	ENSPVAG00000012353	ZC3H13	69	73.846	Pteropus_vampyrus
ENSLACG00000003806	ZC3H13	54	63.347	ENSPNYG00000016000	zc3h13	69	53.446	Pundamilia_nyererei
ENSLACG00000003806	ZC3H13	57	67.123	ENSRBIG00000010463	ZC3H13	90	65.864	Rhinopithecus_bieti
ENSLACG00000003806	ZC3H13	58	63.881	ENSSBOG00000027228	ZC3H13	52	58.140	Saimiri_boliviensis_boliviensis
ENSLACG00000003806	ZC3H13	50	55.378	ENSSDUG00000021808	zc3h13	91	59.152	Seriola_dumerili
ENSLACG00000003806	ZC3H13	56	73.446	ENSSARG00000007106	ZC3H13	77	73.446	Sorex_araneus
ENSLACG00000003806	ZC3H13	55	74.432	ENSSPUG00000013358	ZC3H13	60	75.142	Sphenodon_punctatus
ENSLACG00000003806	ZC3H13	59	64.498	ENSSSCG00000009414	ZC3H13	52	58.803	Sus_scrofa
ENSLACG00000003806	ZC3H13	94	60.945	ENSTTRG00000003611	ZC3H13	91	60.047	Tursiops_truncatus
ENSLACG00000003806	ZC3H13	56	69.118	ENSUMAG00000016220	ZC3H13	62	66.620	Ursus_maritimus
ENSLACG00000003806	ZC3H13	86	73.636	ENSVPAG00000005179	ZC3H13	84	73.636	Vicugna_pacos
ENSLACG00000003806	ZC3H13	57	62.323	ENSVVUG00000028395	ZC3H13	64	66.569	Vulpes_vulpes
ENSLACG00000003806	ZC3H13	92	61.872	ENSXETG00000014637	zc3h13	97	66.900	Xenopus_tropicalis