EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000004207 (Gene tree)
Gene ID: -
Gene Symbol: PARN
Alias: DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 122570 bases
Position: chrJH128651.1:113241-235810
Accession: 102359649
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000004734	RNA_bind	PF08675.11	1.3e-26	1	1
ENSLACP00000004733	CAF1	PF04857.20	4.6e-80	1	1
ENSLACP00000004734	CAF1	PF04857.20	1.2e-78	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000004772	PARN-201	1272	-	ENSLACP00000004733	423 (aa)	-	H3A512
ENSLACT00000004773	PARN-202	1591	XM_006009603	ENSLACP00000004734	529 (aa)	XP_006009665	H3A513

Gene Model

Click here to download ENSLACG00000004207's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000004207's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000004207	PARN	100	77.594	ENSG00000140694	PARN	99	73.171	Homo_sapiens
ENSLACG00000004207	PARN	50	64.019	ENSAPOG00000019730	-	99	63.134	Acanthochromis_polyacanthus
ENSLACG00000004207	PARN	100	76.651	ENSAMEG00000011208	PARN	79	78.020	Ailuropoda_melanoleuca
ENSLACG00000004207	PARN	100	71.934	ENSACIG00000000619	parn	78	73.214	Amphilophus_citrinellus
ENSLACG00000004207	PARN	100	75.236	ENSAOCG00000003465	parn	73	75.794	Amphiprion_ocellaris
ENSLACG00000004207	PARN	85	78.947	ENSAPEG00000010661	parn	86	78.076	Amphiprion_percula
ENSLACG00000004207	PARN	100	75.472	ENSATEG00000004661	parn	75	74.379	Anabas_testudineus
ENSLACG00000004207	PARN	99	76.359	ENSAPLG00000013914	PARN	79	78.812	Anas_platyrhynchos
ENSLACG00000004207	PARN	100	75.529	ENSACAG00000004973	PARN	77	77.030	Anolis_carolinensis
ENSLACG00000004207	PARN	100	77.358	ENSANAG00000031516	PARN	79	78.571	Aotus_nancymaae
ENSLACG00000004207	PARN	100	75.708	ENSACLG00000004742	parn	74	76.389	Astatotilapia_calliptera
ENSLACG00000004207	PARN	100	73.522	ENSAMXG00000012390	parn	82	72.962	Astyanax_mexicanus
ENSLACG00000004207	PARN	100	73.585	ENSBTAG00000018097	PARN	77	81.655	Bos_taurus
ENSLACG00000004207	PARN	100	77.830	ENSCJAG00000015866	PARN	79	79.167	Callithrix_jacchus
ENSLACG00000004207	PARN	100	76.651	ENSCAFG00000018795	PARN	79	78.175	Canis_familiaris
ENSLACG00000004207	PARN	100	77.123	ENSCAFG00020024126	PARN	79	78.571	Canis_lupus_dingo
ENSLACG00000004207	PARN	100	77.123	ENSCHIG00000018143	PARN	79	78.571	Capra_hircus
ENSLACG00000004207	PARN	95	50.584	ENSCAPG00000007984	PARN	78	52.830	Cavia_aperea
ENSLACG00000004207	PARN	100	76.887	ENSCPOG00000002263	PARN	79	77.778	Cavia_porcellus
ENSLACG00000004207	PARN	100	77.358	ENSCCAG00000030367	PARN	79	78.770	Cebus_capucinus
ENSLACG00000004207	PARN	100	77.358	ENSCATG00000041368	PARN	90	78.373	Cercocebus_atys
ENSLACG00000004207	PARN	62	35.000	ENSCATG00000033196	PNLDC1	70	31.944	Cercocebus_atys
ENSLACG00000004207	PARN	100	77.594	ENSCLAG00000015406	PARN	79	78.571	Chinchilla_lanigera
ENSLACG00000004207	PARN	100	77.594	ENSCSAG00000008142	PARN	79	78.770	Chlorocebus_sabaeus
ENSLACG00000004207	PARN	98	65.468	ENSCHOG00000007014	PARN	71	67.051	Choloepus_hoffmanni
ENSLACG00000004207	PARN	85	81.717	ENSCPBG00000006609	PARN	77	82.327	Chrysemys_picta_bellii
ENSLACG00000004207	PARN	100	39.140	ENSCING00000010142	-	96	41.373	Ciona_intestinalis
ENSLACG00000004207	PARN	94	71.707	ENSCANG00000028849	-	78	65.201	Colobus_angolensis_palliatus
ENSLACG00000004207	PARN	52	58.559	ENSCANG00000023734	-	100	58.559	Colobus_angolensis_palliatus
ENSLACG00000004207	PARN	100	74.764	ENSCGRG00001012096	Parn	79	76.587	Cricetulus_griseus_chok1gshd
ENSLACG00000004207	PARN	100	74.764	ENSCGRG00000004939	Parn	79	76.587	Cricetulus_griseus_crigri
ENSLACG00000004207	PARN	100	71.698	ENSCSEG00000002064	parn	100	59.009	Cynoglossus_semilaevis
ENSLACG00000004207	PARN	100	73.349	ENSCVAG00000014848	parn	74	74.405	Cyprinodon_variegatus
ENSLACG00000004207	PARN	100	66.667	ENSDARG00000102634	parn	100	60.185	Danio_rerio
ENSLACG00000004207	PARN	100	76.651	ENSDNOG00000000833	PARN	89	78.373	Dasypus_novemcinctus
ENSLACG00000004207	PARN	52	60.360	ENSDORG00000027812	-	100	60.360	Dipodomys_ordii
ENSLACG00000004207	PARN	77	88.710	ENSETEG00000014828	-	51	88.710	Echinops_telfairi
ENSLACG00000004207	PARN	100	76.651	ENSEASG00005011400	PARN	79	78.373	Equus_asinus_asinus
ENSLACG00000004207	PARN	100	76.179	ENSECAG00000017792	PARN	79	78.175	Equus_caballus
ENSLACG00000004207	PARN	65	87.755	ENSEEUG00000010370	PARN	55	87.755	Erinaceus_europaeus
ENSLACG00000004207	PARN	100	74.468	ENSELUG00000013139	parn	66	75.348	Esox_lucius
ENSLACG00000004207	PARN	100	77.358	ENSFCAG00000044961	PARN	79	78.968	Felis_catus
ENSLACG00000004207	PARN	98	77.698	ENSFALG00000003911	PARN	78	79.125	Ficedula_albicollis
ENSLACG00000004207	PARN	100	77.358	ENSFDAG00000009234	PARN	79	78.373	Fukomys_damarensis
ENSLACG00000004207	PARN	99	65.550	ENSFHEG00000013738	parn	80	65.038	Fundulus_heteroclitus
ENSLACG00000004207	PARN	100	73.113	ENSGMOG00000003231	parn	94	72.605	Gadus_morhua
ENSLACG00000004207	PARN	100	77.594	ENSGALG00000003091	PARN	79	79.167	Gallus_gallus
ENSLACG00000004207	PARN	100	72.877	ENSGAFG00000011061	parn	73	74.008	Gambusia_affinis
ENSLACG00000004207	PARN	100	72.877	ENSGACG00000019501	parn	83	72.084	Gasterosteus_aculeatus
ENSLACG00000004207	PARN	100	77.123	ENSGGOG00000025224	PARN	81	78.373	Gorilla_gorilla
ENSLACG00000004207	PARN	100	75.708	ENSHBUG00000017906	parn	85	74.162	Haplochromis_burtoni
ENSLACG00000004207	PARN	100	77.594	ENSHGLG00000010886	PARN	79	78.571	Heterocephalus_glaber_female
ENSLACG00000004207	PARN	100	77.594	ENSHGLG00100014659	PARN	79	78.571	Heterocephalus_glaber_male
ENSLACG00000004207	PARN	99	70.546	ENSHCOG00000008683	parn	89	68.893	Hippocampus_comes
ENSLACG00000004207	PARN	97	63.835	ENSIPUG00000012401	parn	74	62.749	Ictalurus_punctatus
ENSLACG00000004207	PARN	100	76.651	ENSSTOG00000007519	PARN	79	77.976	Ictidomys_tridecemlineatus
ENSLACG00000004207	PARN	100	76.179	ENSJJAG00000023049	Parn	80	77.381	Jaculus_jaculus
ENSLACG00000004207	PARN	100	73.585	ENSKMAG00000009462	parn	74	74.603	Kryptolebias_marmoratus
ENSLACG00000004207	PARN	100	74.764	ENSLBEG00000009167	parn	81	73.384	Labrus_bergylta
ENSLACG00000004207	PARN	100	77.358	ENSLOCG00000000715	parn	74	77.579	Lepisosteus_oculatus
ENSLACG00000004207	PARN	100	76.415	ENSLAFG00000015036	PARN	80	78.175	Loxodonta_africana
ENSLACG00000004207	PARN	100	72.877	ENSMFAG00000044852	PARN	77	81.655	Macaca_fascicularis
ENSLACG00000004207	PARN	100	77.594	ENSMMUG00000018849	PARN	79	78.770	Macaca_mulatta
ENSLACG00000004207	PARN	100	77.594	ENSMNEG00000045108	PARN	79	78.770	Macaca_nemestrina
ENSLACG00000004207	PARN	100	77.358	ENSMLEG00000031743	PARN	77	81.432	Mandrillus_leucophaeus
ENSLACG00000004207	PARN	76	30.368	ENSMLEG00000044059	PNLDC1	58	30.395	Mandrillus_leucophaeus
ENSLACG00000004207	PARN	100	74.292	ENSMAMG00000006939	parn	73	75.198	Mastacembelus_armatus
ENSLACG00000004207	PARN	100	75.708	ENSMZEG00005013590	parn	85	73.767	Maylandia_zebra
ENSLACG00000004207	PARN	97	75.669	ENSMGAG00000001004	PARN	72	81.210	Meleagris_gallopavo
ENSLACG00000004207	PARN	100	69.515	ENSMAUG00000008025	Parn	79	72.353	Mesocricetus_auratus
ENSLACG00000004207	PARN	100	77.358	ENSMICG00000016053	PARN	79	78.968	Microcebus_murinus
ENSLACG00000004207	PARN	100	74.764	ENSMOCG00000022211	Parn	99	78.367	Microtus_ochrogaster
ENSLACG00000004207	PARN	100	71.934	ENSMMOG00000011333	parn	80	73.992	Mola_mola
ENSLACG00000004207	PARN	100	78.638	ENSMODG00000004915	PARN	99	82.556	Monodelphis_domestica
ENSLACG00000004207	PARN	99	75.598	ENSMALG00000019426	parn	85	75.595	Monopterus_albus
ENSLACG00000004207	PARN	100	75.472	MGP_CAROLIEiJ_G0020466	Parn	79	77.183	Mus_caroli
ENSLACG00000004207	PARN	76	30.061	ENSMUSG00000073460	Pnldc1	95	30.061	Mus_musculus
ENSLACG00000004207	PARN	100	75.472	ENSMUSG00000022685	Parn	96	66.029	Mus_musculus
ENSLACG00000004207	PARN	100	75.236	MGP_PahariEiJ_G0016172	Parn	79	76.786	Mus_pahari
ENSLACG00000004207	PARN	100	75.236	MGP_SPRETEiJ_G0021361	Parn	79	76.984	Mus_spretus
ENSLACG00000004207	PARN	100	76.651	ENSMPUG00000014464	PARN	79	78.373	Mustela_putorius_furo
ENSLACG00000004207	PARN	100	75.472	ENSMLUG00000005414	PARN	99	78.980	Myotis_lucifugus
ENSLACG00000004207	PARN	52	60.633	ENSNGAG00000024082	-	100	60.633	Nannospalax_galili
ENSLACG00000004207	PARN	100	73.113	ENSNBRG00000006805	parn	85	74.206	Neolamprologus_brichardi
ENSLACG00000004207	PARN	100	77.594	ENSNLEG00000010241	PARN	79	78.770	Nomascus_leucogenys
ENSLACG00000004207	PARN	96	55.882	ENSMEUG00000008178	-	73	59.179	Notamacropus_eugenii
ENSLACG00000004207	PARN	98	70.983	ENSOPRG00000012187	PARN	80	73.161	Ochotona_princeps
ENSLACG00000004207	PARN	100	68.618	ENSODEG00000001617	PARN	80	70.809	Octodon_degus
ENSLACG00000004207	PARN	100	75.708	ENSONIG00000000151	parn	75	78.119	Oreochromis_niloticus
ENSLACG00000004207	PARN	99	78.230	ENSOCUG00000000322	PARN	79	79.010	Oryctolagus_cuniculus
ENSLACG00000004207	PARN	52	59.459	ENSORLG00000024893	-	100	59.459	Oryzias_latipes
ENSLACG00000004207	PARN	100	73.585	ENSORLG00020010313	parn	75	74.059	Oryzias_latipes_hni
ENSLACG00000004207	PARN	100	73.349	ENSORLG00015000300	parn	75	73.861	Oryzias_latipes_hsok
ENSLACG00000004207	PARN	100	73.821	ENSOMEG00000019555	parn	97	60.360	Oryzias_melastigma
ENSLACG00000004207	PARN	100	75.587	ENSOGAG00000014626	PARN	99	78.528	Otolemur_garnettii
ENSLACG00000004207	PARN	100	77.358	ENSOARG00000007574	PARN	99	80.204	Ovis_aries
ENSLACG00000004207	PARN	100	77.830	ENSPPAG00000031438	PARN	79	78.770	Pan_paniscus
ENSLACG00000004207	PARN	100	77.358	ENSPPRG00000018583	PARN	79	78.968	Panthera_pardus
ENSLACG00000004207	PARN	100	77.358	ENSPTIG00000012135	PARN	79	78.968	Panthera_tigris_altaica
ENSLACG00000004207	PARN	100	77.358	ENSPTRG00000007792	PARN	79	78.373	Pan_troglodytes
ENSLACG00000004207	PARN	100	73.585	ENSPANG00000020099	PARN	78	75.397	Papio_anubis
ENSLACG00000004207	PARN	100	74.941	ENSPKIG00000022807	parn	80	69.396	Paramormyrops_kingsleyae
ENSLACG00000004207	PARN	60	30.268	ENSPSIG00000011419	PNLDC1	77	30.651	Pelodiscus_sinensis
ENSLACG00000004207	PARN	100	78.066	ENSPSIG00000014804	PARN	77	81.879	Pelodiscus_sinensis
ENSLACG00000004207	PARN	99	70.813	ENSPMGG00000014431	parn	70	71.739	Periophthalmus_magnuspinnatus
ENSLACG00000004207	PARN	100	72.104	ENSPEMG00000018439	Parn	79	74.354	Peromyscus_maniculatus_bairdii
ENSLACG00000004207	PARN	100	60.094	ENSPMAG00000003956	parn	93	64.490	Petromyzon_marinus
ENSLACG00000004207	PARN	100	72.261	ENSPCIG00000001259	PARN	92	72.028	Phascolarctos_cinereus
ENSLACG00000004207	PARN	100	72.642	ENSPFOG00000012823	parn	73	73.810	Poecilia_formosa
ENSLACG00000004207	PARN	100	72.877	ENSPLAG00000006395	parn	73	74.008	Poecilia_latipinna
ENSLACG00000004207	PARN	100	72.406	ENSPMEG00000007711	parn	73	73.611	Poecilia_mexicana
ENSLACG00000004207	PARN	100	72.642	ENSPREG00000000147	parn	73	73.810	Poecilia_reticulata
ENSLACG00000004207	PARN	100	76.995	ENSPPYG00000007123	PARN	79	78.373	Pongo_abelii
ENSLACG00000004207	PARN	91	70.312	ENSPCAG00000001741	PARN	70	74.468	Procavia_capensis
ENSLACG00000004207	PARN	100	73.821	ENSPCOG00000019292	PARN	78	75.992	Propithecus_coquereli
ENSLACG00000004207	PARN	98	76.923	ENSPVAG00000002547	PARN	79	73.956	Pteropus_vampyrus
ENSLACG00000004207	PARN	100	75.708	ENSPNYG00000006835	parn	85	70.611	Pundamilia_nyererei
ENSLACG00000004207	PARN	88	76.819	ENSPNAG00000018905	parn	76	76.623	Pygocentrus_nattereri
ENSLACG00000004207	PARN	100	75.236	ENSRNOG00000002912	Parn	96	81.443	Rattus_norvegicus
ENSLACG00000004207	PARN	76	30.061	ENSRNOG00000023140	Pnldc1	88	30.061	Rattus_norvegicus
ENSLACG00000004207	PARN	100	75.000	ENSSBOG00000034726	PARN	78	76.786	Saimiri_boliviensis_boliviensis
ENSLACG00000004207	PARN	98	79.616	ENSSHAG00000008493	PARN	94	79.286	Sarcophilus_harrisii
ENSLACG00000004207	PARN	100	76.123	ENSSFOG00015014165	parn	83	74.155	Scleropages_formosus
ENSLACG00000004207	PARN	100	72.406	ENSSMAG00000000685	parn	82	68.431	Scophthalmus_maximus
ENSLACG00000004207	PARN	100	74.292	ENSSDUG00000014555	parn	73	75.198	Seriola_dumerili
ENSLACG00000004207	PARN	52	56.306	ENSSLDG00000007603	-	100	56.306	Seriola_lalandi_dorsalis
ENSLACG00000004207	PARN	86	80.441	ENSSARG00000014339	PARN	75	82.949	Sorex_araneus
ENSLACG00000004207	PARN	100	79.009	ENSSPUG00000007719	PARN	79	80.159	Sphenodon_punctatus
ENSLACG00000004207	PARN	100	75.708	ENSSPAG00000007095	parn	81	72.024	Stegastes_partitus
ENSLACG00000004207	PARN	100	76.887	ENSSSCG00000007878	PARN	70	78.571	Sus_scrofa
ENSLACG00000004207	PARN	99	77.512	ENSTGUG00000004971	PARN	79	79.010	Taeniopygia_guttata
ENSLACG00000004207	PARN	51	68.317	ENSTRUG00000015208	-	99	68.317	Takifugu_rubripes
ENSLACG00000004207	PARN	100	72.642	ENSTNIG00000008252	parn	80	73.611	Tetraodon_nigroviridis
ENSLACG00000004207	PARN	85	67.706	ENSTBEG00000010407	PARN	77	67.706	Tupaia_belangeri
ENSLACG00000004207	PARN	98	76.978	ENSTTRG00000002843	PARN	77	79.508	Tursiops_truncatus
ENSLACG00000004207	PARN	82	72.581	ENSUAMG00000008283	PARN	89	72.581	Ursus_americanus
ENSLACG00000004207	PARN	100	77.123	ENSUMAG00000004527	PARN	79	78.770	Ursus_maritimus
ENSLACG00000004207	PARN	98	73.861	ENSVPAG00000008968	PARN	82	75.547	Vicugna_pacos
ENSLACG00000004207	PARN	100	77.123	ENSVVUG00000019509	PARN	79	78.770	Vulpes_vulpes
ENSLACG00000004207	PARN	100	73.995	ENSXETG00000010994	parn	95	75.348	Xenopus_tropicalis
ENSLACG00000004207	PARN	94	70.677	ENSXCOG00000015990	parn	84	68.972	Xiphophorus_couchianus
ENSLACG00000004207	PARN	100	72.877	ENSXMAG00000014783	parn	74	74.008	Xiphophorus_maculatus