EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000004337 (Gene tree)
Gene ID: 102366490
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 66787 bases
Position: chrJH129386.1:119006-185792
Accession: 102366490
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000004878	SpoU_methylase	PF00588.19	1.4e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000004921	TARBP1-201	4917	XM_006011622	ENSLACP00000004878	1639 (aa)	XP_006011684	H3A5F7

Gene Model

Click here to download ENSLACG00000004337's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000004337's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000004337	TARBP1	99	51.294	ENSG00000059588	TARBP1	99	51.747	Homo_sapiens
ENSLACG00000004337	TARBP1	99	43.163	ENSAPOG00000016419	si:dkey-85a20.4	99	43.163	Acanthochromis_polyacanthus
ENSLACG00000004337	TARBP1	84	55.170	ENSAMEG00000003359	TARBP1	99	55.170	Ailuropoda_melanoleuca
ENSLACG00000004337	TARBP1	98	42.953	ENSATEG00000020266	si:dkey-85a20.4	99	42.576	Anabas_testudineus
ENSLACG00000004337	TARBP1	83	55.927	ENSAPLG00000007666	TARBP1	99	56.818	Anas_platyrhynchos
ENSLACG00000004337	TARBP1	99	47.502	ENSACAG00000001142	TARBP1	98	47.333	Anolis_carolinensis
ENSLACG00000004337	TARBP1	93	62.062	ENSBTAG00000004517	TARBP1	99	62.062	Bos_taurus
ENSLACG00000004337	TARBP1	99	51.055	ENSCJAG00000018155	TARBP1	99	51.205	Callithrix_jacchus
ENSLACG00000004337	TARBP1	87	53.471	ENSCAFG00000011533	TARBP1	99	53.434	Canis_familiaris
ENSLACG00000004337	TARBP1	87	53.675	ENSCAFG00020027141	TARBP1	99	50.507	Canis_lupus_dingo
ENSLACG00000004337	TARBP1	99	50.512	ENSCHIG00000011437	TARBP1	99	50.995	Capra_hircus
ENSLACG00000004337	TARBP1	80	55.918	ENSTSYG00000010382	TARBP1	97	55.951	Carlito_syrichta
ENSLACG00000004337	TARBP1	78	49.380	ENSCAPG00000010831	TARBP1	99	49.457	Cavia_aperea
ENSLACG00000004337	TARBP1	99	49.176	ENSCPOG00000013995	TARBP1	99	49.268	Cavia_porcellus
ENSLACG00000004337	TARBP1	96	63.184	ENSCCAG00000037278	TARBP1	99	63.184	Cebus_capucinus
ENSLACG00000004337	TARBP1	99	50.964	ENSCATG00000011754	TARBP1	99	51.658	Cercocebus_atys
ENSLACG00000004337	TARBP1	80	54.214	ENSCLAG00000003655	TARBP1	96	54.290	Chinchilla_lanigera
ENSLACG00000004337	TARBP1	79	56.502	ENSCSAG00000010100	TARBP1	99	56.371	Chlorocebus_sabaeus
ENSLACG00000004337	TARBP1	95	51.627	ENSCPBG00000005587	TARBP1	94	58.926	Chrysemys_picta_bellii
ENSLACG00000004337	TARBP1	83	56.117	ENSCANG00000034343	TARBP1	99	56.076	Colobus_angolensis_palliatus
ENSLACG00000004337	TARBP1	99	48.934	ENSCGRG00001016690	Tarbp1	99	48.721	Cricetulus_griseus_chok1gshd
ENSLACG00000004337	TARBP1	89	51.093	ENSCGRG00000016893	Tarbp1	97	51.348	Cricetulus_griseus_crigri
ENSLACG00000004337	TARBP1	93	47.653	ENSCSEG00000005255	si:dkey-85a20.4	99	47.774	Cynoglossus_semilaevis
ENSLACG00000004337	TARBP1	99	42.294	ENSDARG00000079055	si:dkey-85a20.4	99	55.060	Danio_rerio
ENSLACG00000004337	TARBP1	99	51.741	ENSDNOG00000008637	TARBP1	99	52.070	Dasypus_novemcinctus
ENSLACG00000004337	TARBP1	80	52.740	ENSDORG00000007984	Tarbp1	100	52.816	Dipodomys_ordii
ENSLACG00000004337	TARBP1	99	51.899	ENSEASG00005000252	TARBP1	99	51.718	Equus_asinus_asinus
ENSLACG00000004337	TARBP1	94	57.906	ENSECAG00000023673	TARBP1	99	58.015	Equus_caballus
ENSLACG00000004337	TARBP1	99	40.406	ENSELUG00000012193	si:dkey-85a20.4	99	40.347	Esox_lucius
ENSLACG00000004337	TARBP1	99	48.166	ENSFCAG00000014183	TARBP1	99	48.621	Felis_catus
ENSLACG00000004337	TARBP1	80	57.165	ENSFALG00000013565	TARBP1	99	57.208	Ficedula_albicollis
ENSLACG00000004337	TARBP1	79	51.961	ENSFDAG00000001308	TARBP1	99	51.961	Fukomys_damarensis
ENSLACG00000004337	TARBP1	81	55.337	ENSFHEG00000007565	si:dkey-85a20.4	95	55.337	Fundulus_heteroclitus
ENSLACG00000004337	TARBP1	85	42.867	ENSGMOG00000004549	si:dkey-85a20.4	99	42.867	Gadus_morhua
ENSLACG00000004337	TARBP1	84	53.421	ENSGALG00000011000	TARBP1	99	49.604	Gallus_gallus
ENSLACG00000004337	TARBP1	99	43.303	ENSGAFG00000007387	si:dkey-85a20.4	99	43.243	Gambusia_affinis
ENSLACG00000004337	TARBP1	85	45.863	ENSGACG00000005865	si:dkey-85a20.4	99	45.933	Gasterosteus_aculeatus
ENSLACG00000004337	TARBP1	84	58.631	ENSGAGG00000012102	TARBP1	99	52.731	Gopherus_agassizii
ENSLACG00000004337	TARBP1	84	54.242	ENSGGOG00000022879	TARBP1	99	54.124	Gorilla_gorilla
ENSLACG00000004337	TARBP1	99	43.690	ENSHBUG00000008877	si:dkey-85a20.4	99	43.510	Haplochromis_burtoni
ENSLACG00000004337	TARBP1	99	49.757	ENSHGLG00000011592	TARBP1	99	49.848	Heterocephalus_glaber_female
ENSLACG00000004337	TARBP1	84	53.768	ENSHGLG00100015169	TARBP1	94	53.768	Heterocephalus_glaber_male
ENSLACG00000004337	TARBP1	96	46.196	ENSIPUG00000005249	si:dkey-85a20.4	98	42.623	Ictalurus_punctatus
ENSLACG00000004337	TARBP1	83	52.100	ENSSTOG00000032291	TARBP1	96	52.248	Ictidomys_tridecemlineatus
ENSLACG00000004337	TARBP1	83	49.891	ENSJJAG00000017840	Tarbp1	94	49.891	Jaculus_jaculus
ENSLACG00000004337	TARBP1	80	48.758	ENSKMAG00000017546	si:dkey-85a20.4	85	48.758	Kryptolebias_marmoratus
ENSLACG00000004337	TARBP1	99	47.826	ENSLOCG00000016214	si:dkey-85a20.4	100	47.703	Lepisosteus_oculatus
ENSLACG00000004337	TARBP1	93	52.846	ENSLAFG00000011394	TARBP1	95	54.115	Loxodonta_africana
ENSLACG00000004337	TARBP1	99	50.274	ENSMFAG00000041068	TARBP1	99	50.151	Macaca_fascicularis
ENSLACG00000004337	TARBP1	99	49.668	ENSMMUG00000021703	TARBP1	99	50.241	Macaca_mulatta
ENSLACG00000004337	TARBP1	99	51.177	ENSMNEG00000045002	TARBP1	99	51.691	Macaca_nemestrina
ENSLACG00000004337	TARBP1	83	56.071	ENSMLEG00000044182	TARBP1	99	55.947	Mandrillus_leucophaeus
ENSLACG00000004337	TARBP1	99	43.237	ENSMAMG00000021760	si:dkey-85a20.4	99	43.056	Mastacembelus_armatus
ENSLACG00000004337	TARBP1	99	43.627	ENSMZEG00005005751	si:dkey-85a20.4	99	43.447	Maylandia_zebra
ENSLACG00000004337	TARBP1	99	49.116	ENSMAUG00000020968	Tarbp1	99	48.904	Mesocricetus_auratus
ENSLACG00000004337	TARBP1	99	46.755	ENSMICG00000015280	TARBP1	99	47.151	Microcebus_murinus
ENSLACG00000004337	TARBP1	99	49.143	ENSMOCG00000004128	Tarbp1	99	49.113	Microtus_ochrogaster
ENSLACG00000004337	TARBP1	99	41.762	ENSMMOG00000007795	si:dkey-85a20.4	99	41.883	Mola_mola
ENSLACG00000004337	TARBP1	99	51.408	ENSMODG00000008504	TARBP1	99	51.528	Monodelphis_domestica
ENSLACG00000004337	TARBP1	99	42.080	ENSMALG00000002916	si:dkey-85a20.4	99	41.916	Monopterus_albus
ENSLACG00000004337	TARBP1	99	48.837	MGP_CAROLIEiJ_G0031729	Tarbp1	99	48.746	Mus_caroli
ENSLACG00000004337	TARBP1	99	48.960	ENSMUSG00000090290	Tarbp1	99	48.869	Mus_musculus
ENSLACG00000004337	TARBP1	99	48.563	MGP_PahariEiJ_G0023326	Tarbp1	99	48.472	Mus_pahari
ENSLACG00000004337	TARBP1	99	48.960	MGP_SPRETEiJ_G0032846	Tarbp1	99	48.869	Mus_spretus
ENSLACG00000004337	TARBP1	76	55.901	ENSMPUG00000002802	TARBP1	99	55.901	Mustela_putorius_furo
ENSLACG00000004337	TARBP1	83	51.672	ENSMLUG00000002414	TARBP1	99	51.852	Myotis_lucifugus
ENSLACG00000004337	TARBP1	99	51.054	ENSNLEG00000002518	TARBP1	99	51.506	Nomascus_leucogenys
ENSLACG00000004337	TARBP1	66	62.687	ENSMEUG00000011370	-	67	62.687	Notamacropus_eugenii
ENSLACG00000004337	TARBP1	69	62.355	ENSOPRG00000013822	TARBP1	70	62.355	Ochotona_princeps
ENSLACG00000004337	TARBP1	90	51.680	ENSODEG00000005238	TARBP1	95	51.671	Octodon_degus
ENSLACG00000004337	TARBP1	85	47.265	ENSONIG00000009789	si:dkey-85a20.4	99	47.475	Oreochromis_niloticus
ENSLACG00000004337	TARBP1	99	51.209	ENSOCUG00000017418	TARBP1	99	51.422	Oryctolagus_cuniculus
ENSLACG00000004337	TARBP1	99	41.612	ENSORLG00000010529	si:dkey-85a20.4	99	42.032	Oryzias_latipes
ENSLACG00000004337	TARBP1	99	41.437	ENSORLG00020019264	si:dkey-85a20.4	99	41.792	Oryzias_latipes_hni
ENSLACG00000004337	TARBP1	99	41.562	ENSORLG00015003276	si:dkey-85a20.4	99	41.982	Oryzias_latipes_hsok
ENSLACG00000004337	TARBP1	99	49.790	ENSOGAG00000002379	TARBP1	99	49.910	Otolemur_garnettii
ENSLACG00000004337	TARBP1	88	53.549	ENSOARG00000003434	TARBP1	96	53.667	Ovis_aries
ENSLACG00000004337	TARBP1	83	55.775	ENSPPAG00000028097	TARBP1	99	55.653	Pan_paniscus
ENSLACG00000004337	TARBP1	84	53.667	ENSPPRG00000013561	TARBP1	99	48.507	Panthera_pardus
ENSLACG00000004337	TARBP1	82	54.886	ENSPTIG00000009281	TARBP1	99	54.846	Panthera_tigris_altaica
ENSLACG00000004337	TARBP1	99	51.024	ENSPTRG00000002124	TARBP1	99	51.718	Pan_troglodytes
ENSLACG00000004337	TARBP1	99	51.177	ENSPANG00000021933	TARBP1	99	51.751	Papio_anubis
ENSLACG00000004337	TARBP1	99	43.351	ENSPKIG00000016716	si:dkey-85a20.4	99	43.411	Paramormyrops_kingsleyae
ENSLACG00000004337	TARBP1	79	57.980	ENSPSIG00000010699	TARBP1	99	57.980	Pelodiscus_sinensis
ENSLACG00000004337	TARBP1	88	51.171	ENSPEMG00000006888	Tarbp1	95	51.171	Peromyscus_maniculatus_bairdii
ENSLACG00000004337	TARBP1	91	78.218	ENSPCIG00000029710	TARBP1	98	78.218	Phascolarctos_cinereus
ENSLACG00000004337	TARBP1	85	46.794	ENSPFOG00000013020	si:dkey-85a20.4	99	46.794	Poecilia_formosa
ENSLACG00000004337	TARBP1	99	43.450	ENSPLAG00000006044	si:dkey-85a20.4	99	43.450	Poecilia_latipinna
ENSLACG00000004337	TARBP1	99	43.690	ENSPMEG00000017857	si:dkey-85a20.4	99	43.690	Poecilia_mexicana
ENSLACG00000004337	TARBP1	99	43.313	ENSPREG00000022753	si:dkey-85a20.4	99	43.313	Poecilia_reticulata
ENSLACG00000004337	TARBP1	91	56.708	ENSPPYG00000000102	TARBP1	99	56.798	Pongo_abelii
ENSLACG00000004337	TARBP1	82	78.146	ENSPCAG00000004808	TARBP1	82	78.146	Procavia_capensis
ENSLACG00000004337	TARBP1	99	49.398	ENSPCOG00000005666	TARBP1	99	49.819	Propithecus_coquereli
ENSLACG00000004337	TARBP1	99	43.874	ENSPVAG00000014798	TARBP1	99	44.888	Pteropus_vampyrus
ENSLACG00000004337	TARBP1	99	42.788	ENSPNYG00000019135	si:dkey-85a20.4	99	42.608	Pundamilia_nyererei
ENSLACG00000004337	TARBP1	99	47.173	ENSRNOG00000053574	Tarbp1	99	47.084	Rattus_norvegicus
ENSLACG00000004337	TARBP1	90	50.744	ENSRBIG00000043362	TARBP1	97	51.033	Rhinopithecus_bieti
ENSLACG00000004337	TARBP1	88	54.233	ENSRROG00000029527	TARBP1	99	50.912	Rhinopithecus_roxellana
ENSLACG00000004337	TARBP1	83	55.988	ENSSBOG00000034503	TARBP1	96	56.062	Saimiri_boliviensis_boliviensis
ENSLACG00000004337	TARBP1	83	55.882	ENSSHAG00000000013	TARBP1	99	55.882	Sarcophilus_harrisii
ENSLACG00000004337	TARBP1	84	47.500	ENSSFOG00015002660	si:dkey-85a20.4	96	47.875	Scleropages_formosus
ENSLACG00000004337	TARBP1	99	43.278	ENSSMAG00000007081	si:dkey-85a20.4	99	43.345	Scophthalmus_maximus
ENSLACG00000004337	TARBP1	100	42.150	ENSSDUG00000023566	si:dkey-85a20.4	99	41.757	Seriola_dumerili
ENSLACG00000004337	TARBP1	99	43.114	ENSSLDG00000020200	si:dkey-85a20.4	99	43.028	Seriola_lalandi_dorsalis
ENSLACG00000004337	TARBP1	75	64.501	ENSSARG00000012207	TARBP1	76	64.501	Sorex_araneus
ENSLACG00000004337	TARBP1	99	51.519	ENSSPUG00000015364	TARBP1	99	51.852	Sphenodon_punctatus
ENSLACG00000004337	TARBP1	99	43.154	ENSSPAG00000007213	si:dkey-85a20.4	99	43.154	Stegastes_partitus
ENSLACG00000004337	TARBP1	95	56.128	ENSSSCG00000010160	TARBP1	99	56.394	Sus_scrofa
ENSLACG00000004337	TARBP1	80	56.255	ENSTGUG00000010214	TARBP1	100	56.255	Taeniopygia_guttata
ENSLACG00000004337	TARBP1	94	41.545	ENSTNIG00000016586	si:dkey-85a20.4	99	46.098	Tetraodon_nigroviridis
ENSLACG00000004337	TARBP1	79	51.492	ENSTTRG00000008707	TARBP1	95	51.240	Tursiops_truncatus
ENSLACG00000004337	TARBP1	80	55.714	ENSUMAG00000006730	TARBP1	98	55.714	Ursus_maritimus
ENSLACG00000004337	TARBP1	79	77.320	ENSVPAG00000007665	TARBP1	85	77.320	Vicugna_pacos
ENSLACG00000004337	TARBP1	84	54.993	ENSVVUG00000007460	TARBP1	99	52.595	Vulpes_vulpes
ENSLACG00000004337	TARBP1	83	50.871	ENSXETG00000016224	tarbp1	99	50.871	Xenopus_tropicalis
ENSLACG00000004337	TARBP1	80	50.834	ENSXCOG00000011779	si:dkey-85a20.4	98	51.220	Xiphophorus_couchianus
ENSLACG00000004337	TARBP1	65	45.810	ENSXMAG00000009600	si:dkey-85a20.4	100	46.089	Xiphophorus_maculatus