EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000004436 (Gene tree)
Gene ID: 102352833
Gene Symbol: SF3B4
Alias: Hsh49|SAP49|SF3b49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 27884 bases
Position: chrJH126664.1:122935-150818
Accession: 102352833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000004989	RRM_1	PF00076.22	1.1e-39	1	2
ENSLACP00000004989	RRM_1	PF00076.22	1.1e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000005033	SF3B4-201	1138	XM_005991671	ENSLACP00000004989	363 (aa)	XP_005991733	H3A5R8

Gene Model

Click here to download ENSLACG00000004436's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000004436's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000004436	SF3B4	50	35.616	ENSLACG00000008316	ELAVL4	86	32.727
ENSLACG00000004436	SF3B4	50	43.716	ENSLACG00000011907	PABPC4	57	43.716
ENSLACG00000004436	SF3B4	50	35.616	ENSLACG00000010888	ELAVL2	64	36.250
ENSLACG00000004436	SF3B4	93	39.674	ENSLACG00000005762	PABPC1L	66	39.674
ENSLACG00000004436	SF3B4	50	33.125	ENSLACG00000017607	ELAVL1	92	32.716
ENSLACG00000004436	SF3B4	85	41.530	ENSLACG00000004395	PABPC1	57	41.530

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000004436	SF3B4	87	85.312	ENSG00000143368	SF3B4	97	96.757	Homo_sapiens
ENSLACG00000004436	SF3B4	66	95.000	ENSAPOG00000017647	sf3b4	60	95.000	Acanthochromis_polyacanthus
ENSLACG00000004436	SF3B4	87	85.625	ENSAMEG00000010073	SF3B4	57	95.473	Ailuropoda_melanoleuca
ENSLACG00000004436	SF3B4	66	95.000	ENSAOCG00000019801	sf3b4	60	95.000	Amphiprion_ocellaris
ENSLACG00000004436	SF3B4	66	95.000	ENSAPEG00000010365	sf3b4	60	95.000	Amphiprion_percula
ENSLACG00000004436	SF3B4	66	94.583	ENSATEG00000012844	sf3b4	60	94.583	Anabas_testudineus
ENSLACG00000004436	SF3B4	67	97.119	ENSACAG00000010019	SF3B4	58	97.119	Anolis_carolinensis
ENSLACG00000004436	SF3B4	87	85.312	ENSANAG00000031025	SF3B4	57	95.473	Aotus_nancymaae
ENSLACG00000004436	SF3B4	66	94.167	ENSACLG00000014260	sf3b4	60	94.167	Astatotilapia_calliptera
ENSLACG00000004436	SF3B4	66	94.583	ENSAMXG00000008282	sf3b4	60	94.583	Astyanax_mexicanus
ENSLACG00000004436	SF3B4	60	93.548	ENSBTAG00000012793	-	53	93.548	Bos_taurus
ENSLACG00000004436	SF3B4	87	85.625	ENSBTAG00000012495	SF3B4	57	95.473	Bos_taurus
ENSLACG00000004436	SF3B4	59	80.465	WBGene00004723	sap-49	55	80.465	Caenorhabditis_elegans
ENSLACG00000004436	SF3B4	67	95.473	ENSCAFG00000011617	SF3B4	57	95.473	Canis_familiaris
ENSLACG00000004436	SF3B4	67	95.473	ENSCAFG00020019775	SF3B4	57	95.473	Canis_lupus_dingo
ENSLACG00000004436	SF3B4	83	62.500	ENSCHIG00000006654	-	50	73.632	Capra_hircus
ENSLACG00000004436	SF3B4	87	85.625	ENSCHIG00000025663	-	57	95.473	Capra_hircus
ENSLACG00000004436	SF3B4	87	85.312	ENSTSYG00000009295	SF3B4	57	95.473	Carlito_syrichta
ENSLACG00000004436	SF3B4	67	95.473	ENSCPOG00000008267	SF3B4	57	95.473	Cavia_porcellus
ENSLACG00000004436	SF3B4	79	90.559	ENSCCAG00000021751	-	55	94.650	Cebus_capucinus
ENSLACG00000004436	SF3B4	87	75.862	ENSCCAG00000019823	-	57	85.000	Cebus_capucinus
ENSLACG00000004436	SF3B4	87	85.312	ENSCATG00000033114	SF3B4	57	95.473	Cercocebus_atys
ENSLACG00000004436	SF3B4	67	95.473	ENSCLAG00000015851	SF3B4	57	95.473	Chinchilla_lanigera
ENSLACG00000004436	SF3B4	87	85.312	ENSCSAG00000018129	SF3B4	57	95.473	Chlorocebus_sabaeus
ENSLACG00000004436	SF3B4	67	97.531	ENSCPBG00000008041	SF3B4	58	97.531	Chrysemys_picta_bellii
ENSLACG00000004436	SF3B4	62	88.393	ENSCING00000002337	-	60	89.140	Ciona_intestinalis
ENSLACG00000004436	SF3B4	57	90.714	ENSCSAVG00000007809	-	95	86.592	Ciona_savignyi
ENSLACG00000004436	SF3B4	87	85.312	ENSCANG00000035579	SF3B4	57	95.473	Colobus_angolensis_palliatus
ENSLACG00000004436	SF3B4	67	95.473	ENSCGRG00001003590	Sf3b4	57	95.473	Cricetulus_griseus_chok1gshd
ENSLACG00000004436	SF3B4	67	95.473	ENSCGRG00000016914	Sf3b4	57	95.473	Cricetulus_griseus_crigri
ENSLACG00000004436	SF3B4	73	89.811	ENSCVAG00000005536	sf3b4	58	95.175	Cyprinodon_variegatus
ENSLACG00000004436	SF3B4	66	95.000	ENSDARG00000018574	sf3b4	60	95.000	Danio_rerio
ENSLACG00000004436	SF3B4	85	81.410	ENSDNOG00000048908	-	56	90.213	Dasypus_novemcinctus
ENSLACG00000004436	SF3B4	64	81.034	ENSDNOG00000037231	-	54	83.410	Dasypus_novemcinctus
ENSLACG00000004436	SF3B4	87	85.625	ENSDORG00000016366	Sf3b4	57	95.473	Dipodomys_ordii
ENSLACG00000004436	SF3B4	87	78.750	ENSETEG00000008963	SF3B4	57	86.420	Echinops_telfairi
ENSLACG00000004436	SF3B4	50	93.370	ENSEBUG00000011194	-	52	92.391	Eptatretus_burgeri
ENSLACG00000004436	SF3B4	87	85.625	ENSEASG00005001477	SF3B4	57	95.473	Equus_asinus_asinus
ENSLACG00000004436	SF3B4	87	85.625	ENSECAG00000024737	SF3B4	57	95.473	Equus_caballus
ENSLACG00000004436	SF3B4	66	95.417	ENSELUG00000012876	sf3b4	60	95.417	Esox_lucius
ENSLACG00000004436	SF3B4	87	85.625	ENSFCAG00000010106	SF3B4	57	95.473	Felis_catus
ENSLACG00000004436	SF3B4	67	95.473	ENSFDAG00000009286	SF3B4	57	95.473	Fukomys_damarensis
ENSLACG00000004436	SF3B4	67	96.708	ENSGALG00000013352	SF3B4	58	96.708	Gallus_gallus
ENSLACG00000004436	SF3B4	73	91.698	ENSGAFG00000010181	sf3b4	61	95.000	Gambusia_affinis
ENSLACG00000004436	SF3B4	67	97.531	ENSGAGG00000025055	SF3B4	51	97.531	Gopherus_agassizii
ENSLACG00000004436	SF3B4	87	85.312	ENSGGOG00000004761	SF3B4	57	95.473	Gorilla_gorilla
ENSLACG00000004436	SF3B4	98	67.688	ENSGGOG00000038845	-	55	87.383	Gorilla_gorilla
ENSLACG00000004436	SF3B4	66	94.167	ENSHBUG00000002028	sf3b4	60	94.167	Haplochromis_burtoni
ENSLACG00000004436	SF3B4	67	95.473	ENSHGLG00000012360	SF3B4	57	95.473	Heterocephalus_glaber_female
ENSLACG00000004436	SF3B4	67	95.473	ENSHGLG00100008533	SF3B4	58	95.473	Heterocephalus_glaber_male
ENSLACG00000004436	SF3B4	66	95.000	ENSIPUG00000012242	Sf3b4	60	95.000	Ictalurus_punctatus
ENSLACG00000004436	SF3B4	68	74.390	ENSSTOG00000029627	-	50	75.566	Ictidomys_tridecemlineatus
ENSLACG00000004436	SF3B4	87	85.625	ENSSTOG00000000684	-	57	95.473	Ictidomys_tridecemlineatus
ENSLACG00000004436	SF3B4	66	70.000	ENSJJAG00000022500	Sf3b4	60	71.333	Jaculus_jaculus
ENSLACG00000004436	SF3B4	66	95.000	ENSKMAG00000008154	sf3b4	61	95.000	Kryptolebias_marmoratus
ENSLACG00000004436	SF3B4	64	95.708	ENSLBEG00000026818	sf3b4	57	97.368	Labrus_bergylta
ENSLACG00000004436	SF3B4	67	96.296	ENSLOCG00000009048	sf3b4	60	96.047	Lepisosteus_oculatus
ENSLACG00000004436	SF3B4	87	86.875	ENSLAFG00000008531	SF3B4	57	95.473	Loxodonta_africana
ENSLACG00000004436	SF3B4	87	66.032	ENSMFAG00000039067	-	57	79.535	Macaca_fascicularis
ENSLACG00000004436	SF3B4	87	85.312	ENSMFAG00000042395	SF3B4	57	95.473	Macaca_fascicularis
ENSLACG00000004436	SF3B4	87	85.312	ENSMMUG00000007256	SF3B4	57	95.473	Macaca_mulatta
ENSLACG00000004436	SF3B4	87	65.714	ENSMNEG00000031526	-	57	79.070	Macaca_nemestrina
ENSLACG00000004436	SF3B4	87	85.312	ENSMNEG00000031839	SF3B4	57	95.473	Macaca_nemestrina
ENSLACG00000004436	SF3B4	87	85.312	ENSMLEG00000038667	SF3B4	57	95.473	Mandrillus_leucophaeus
ENSLACG00000004436	SF3B4	66	95.000	ENSMAMG00000014692	sf3b4	60	95.000	Mastacembelus_armatus
ENSLACG00000004436	SF3B4	66	94.167	ENSMZEG00005026741	sf3b4	60	94.167	Maylandia_zebra
ENSLACG00000004436	SF3B4	67	96.708	ENSMGAG00000000653	SF3B4	58	96.708	Meleagris_gallopavo
ENSLACG00000004436	SF3B4	67	95.473	ENSMAUG00000015266	Sf3b4	57	95.473	Mesocricetus_auratus
ENSLACG00000004436	SF3B4	87	85.625	ENSMICG00000044961	SF3B4	57	95.473	Microcebus_murinus
ENSLACG00000004436	SF3B4	87	85.938	ENSMOCG00000013658	-	57	95.473	Microtus_ochrogaster
ENSLACG00000004436	SF3B4	85	83.923	ENSMOCG00000014155	-	63	91.732	Microtus_ochrogaster
ENSLACG00000004436	SF3B4	63	97.807	ENSMMOG00000018032	sf3b4	58	97.807	Mola_mola
ENSLACG00000004436	SF3B4	87	85.938	ENSMODG00000018767	SF3B4	57	95.473	Monodelphis_domestica
ENSLACG00000004436	SF3B4	66	95.417	ENSMALG00000006174	sf3b4	60	95.417	Monopterus_albus
ENSLACG00000004436	SF3B4	67	95.473	MGP_CAROLIEiJ_G0025365	Sf3b4	57	95.473	Mus_caroli
ENSLACG00000004436	SF3B4	67	95.473	ENSMUSG00000068856	Sf3b4	57	95.473	Mus_musculus
ENSLACG00000004436	SF3B4	67	95.473	MGP_PahariEiJ_G0026809	Sf3b4	57	95.473	Mus_pahari
ENSLACG00000004436	SF3B4	67	95.473	MGP_SPRETEiJ_G0026309	Sf3b4	57	95.473	Mus_spretus
ENSLACG00000004436	SF3B4	87	85.625	ENSMPUG00000005563	SF3B4	57	95.473	Mustela_putorius_furo
ENSLACG00000004436	SF3B4	87	85.625	ENSMLUG00000010789	SF3B4	57	95.473	Myotis_lucifugus
ENSLACG00000004436	SF3B4	87	86.562	ENSNGAG00000016337	Sf3b4	57	95.473	Nannospalax_galili
ENSLACG00000004436	SF3B4	66	94.583	ENSNBRG00000013865	sf3b4	60	94.583	Neolamprologus_brichardi
ENSLACG00000004436	SF3B4	99	69.972	ENSNLEG00000000537	-	58	87.719	Nomascus_leucogenys
ENSLACG00000004436	SF3B4	63	92.982	ENSOPRG00000010808	SF3B4	54	92.982	Ochotona_princeps
ENSLACG00000004436	SF3B4	86	74.528	ENSODEG00000003597	-	60	79.508	Octodon_degus
ENSLACG00000004436	SF3B4	100	59.946	ENSODEG00000008916	-	55	75.472	Octodon_degus
ENSLACG00000004436	SF3B4	66	94.167	ENSONIG00000002730	sf3b4	60	94.167	Oreochromis_niloticus
ENSLACG00000004436	SF3B4	72	71.698	ENSOANG00000004768	-	50	81.481	Ornithorhynchus_anatinus
ENSLACG00000004436	SF3B4	87	85.625	ENSOCUG00000004614	SF3B4	57	95.473	Oryctolagus_cuniculus
ENSLACG00000004436	SF3B4	64	96.121	ENSORLG00000003062	sf3b4	59	97.368	Oryzias_latipes
ENSLACG00000004436	SF3B4	64	96.121	ENSORLG00020000687	sf3b4	57	97.368	Oryzias_latipes_hni
ENSLACG00000004436	SF3B4	64	96.121	ENSORLG00015010989	sf3b4	57	97.368	Oryzias_latipes_hsok
ENSLACG00000004436	SF3B4	64	96.121	ENSOMEG00000013694	sf3b4	57	97.368	Oryzias_melastigma
ENSLACG00000004436	SF3B4	87	85.625	ENSOGAG00000006265	SF3B4	57	95.473	Otolemur_garnettii
ENSLACG00000004436	SF3B4	82	73.000	ENSOARG00000007368	-	55	80.804	Ovis_aries
ENSLACG00000004436	SF3B4	87	85.625	ENSOARG00000020718	-	57	95.473	Ovis_aries
ENSLACG00000004436	SF3B4	89	75.460	ENSPPAG00000030024	-	56	87.281	Pan_paniscus
ENSLACG00000004436	SF3B4	87	85.312	ENSPPAG00000040904	SF3B4	57	95.473	Pan_paniscus
ENSLACG00000004436	SF3B4	87	85.625	ENSPPRG00000007384	SF3B4	57	95.473	Panthera_pardus
ENSLACG00000004436	SF3B4	87	85.625	ENSPTIG00000014530	SF3B4	57	95.473	Panthera_tigris_altaica
ENSLACG00000004436	SF3B4	89	75.776	ENSPTRG00000049727	-	57	87.719	Pan_troglodytes
ENSLACG00000004436	SF3B4	87	85.312	ENSPTRG00000001243	SF3B4	57	95.473	Pan_troglodytes
ENSLACG00000004436	SF3B4	87	85.312	ENSPANG00000005126	SF3B4	57	95.473	Papio_anubis
ENSLACG00000004436	SF3B4	66	95.417	ENSPKIG00000020669	sf3b4	64	95.417	Paramormyrops_kingsleyae
ENSLACG00000004436	SF3B4	53	97.382	ENSPSIG00000009565	SF3B4	68	98.378	Pelodiscus_sinensis
ENSLACG00000004436	SF3B4	67	95.473	ENSPEMG00000017568	Sf3b4	57	95.473	Peromyscus_maniculatus_bairdii
ENSLACG00000004436	SF3B4	100	76.022	ENSPMAG00000007842	-	54	92.544	Petromyzon_marinus
ENSLACG00000004436	SF3B4	87	85.938	ENSPCIG00000008765	SF3B4	57	95.473	Phascolarctos_cinereus
ENSLACG00000004436	SF3B4	73	91.321	ENSPFOG00000005754	sf3b4	61	94.167	Poecilia_formosa
ENSLACG00000004436	SF3B4	73	91.321	ENSPLAG00000001401	sf3b4	66	94.167	Poecilia_latipinna
ENSLACG00000004436	SF3B4	73	91.321	ENSPREG00000011076	sf3b4	60	94.167	Poecilia_reticulata
ENSLACG00000004436	SF3B4	57	95.673	ENSPCAG00000000392	SF3B4	50	95.673	Procavia_capensis
ENSLACG00000004436	SF3B4	87	85.625	ENSPCOG00000015399	SF3B4	57	95.473	Propithecus_coquereli
ENSLACG00000004436	SF3B4	87	85.625	ENSPVAG00000014171	SF3B4	57	95.473	Pteropus_vampyrus
ENSLACG00000004436	SF3B4	66	94.167	ENSPNYG00000012700	sf3b4	60	94.167	Pundamilia_nyererei
ENSLACG00000004436	SF3B4	66	95.000	ENSPNAG00000000686	sf3b4	61	95.000	Pygocentrus_nattereri
ENSLACG00000004436	SF3B4	67	95.473	ENSRNOG00000021181	Sf3b4	57	95.473	Rattus_norvegicus
ENSLACG00000004436	SF3B4	87	85.312	ENSRBIG00000043392	SF3B4	57	95.473	Rhinopithecus_bieti
ENSLACG00000004436	SF3B4	87	85.312	ENSRROG00000029366	SF3B4	57	95.473	Rhinopithecus_roxellana
ENSLACG00000004436	SF3B4	87	65.109	ENSRROG00000028213	-	56	74.545	Rhinopithecus_roxellana
ENSLACG00000004436	SF3B4	50	37.436	YOR319W	-	91	37.436	Saccharomyces_cerevisiae
ENSLACG00000004436	SF3B4	87	85.000	ENSSBOG00000012310	-	57	95.062	Saimiri_boliviensis_boliviensis
ENSLACG00000004436	SF3B4	87	82.500	ENSSHAG00000004043	SF3B4	57	90.717	Sarcophilus_harrisii
ENSLACG00000004436	SF3B4	66	95.833	ENSSFOG00015008864	sf3b4	59	95.833	Scleropages_formosus
ENSLACG00000004436	SF3B4	66	95.000	ENSSMAG00000006837	sf3b4	60	95.000	Scophthalmus_maximus
ENSLACG00000004436	SF3B4	73	92.830	ENSSDUG00000012064	sf3b4	60	95.417	Seriola_dumerili
ENSLACG00000004436	SF3B4	73	92.830	ENSSLDG00000014226	sf3b4	60	95.417	Seriola_lalandi_dorsalis
ENSLACG00000004436	SF3B4	67	95.510	ENSSPUG00000001028	SF3B4	57	98.684	Sphenodon_punctatus
ENSLACG00000004436	SF3B4	66	95.417	ENSSPAG00000019219	sf3b4	60	95.417	Stegastes_partitus
ENSLACG00000004436	SF3B4	91	54.103	ENSSSCG00000039440	-	55	63.158	Sus_scrofa
ENSLACG00000004436	SF3B4	87	86.562	ENSSSCG00000006665	-	57	95.473	Sus_scrofa
ENSLACG00000004436	SF3B4	65	96.203	ENSTGUG00000004470	SF3B4	90	97.807	Taeniopygia_guttata
ENSLACG00000004436	SF3B4	63	96.035	ENSTRUG00000004516	sf3b4	57	95.614	Takifugu_rubripes
ENSLACG00000004436	SF3B4	63	96.491	ENSTNIG00000009156	sf3b4	58	96.491	Tetraodon_nigroviridis
ENSLACG00000004436	SF3B4	87	85.625	ENSTTRG00000005217	SF3B4	57	95.473	Tursiops_truncatus
ENSLACG00000004436	SF3B4	87	85.625	ENSUAMG00000022468	SF3B4	57	95.473	Ursus_americanus
ENSLACG00000004436	SF3B4	67	95.473	ENSUMAG00000003802	SF3B4	58	95.473	Ursus_maritimus
ENSLACG00000004436	SF3B4	84	85.065	ENSVPAG00000008152	SF3B4	56	95.238	Vicugna_pacos
ENSLACG00000004436	SF3B4	67	95.473	ENSVVUG00000007732	-	62	95.473	Vulpes_vulpes
ENSLACG00000004436	SF3B4	66	92.437	ENSVVUG00000022697	-	50	92.437	Vulpes_vulpes
ENSLACG00000004436	SF3B4	73	92.075	ENSXCOG00000019895	sf3b4	61	95.000	Xiphophorus_couchianus
ENSLACG00000004436	SF3B4	73	92.075	ENSXMAG00000003772	sf3b4	61	95.000	Xiphophorus_maculatus