EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000004486 (Gene tree)
Gene ID: 102350502
Gene Symbol: -
Alias: -
Full Name: lysine rich coiled-coil 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 80091 bases
Position: chrJH128706.1:125067-205157
Accession: 102350502
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000005044	zf-met	PF12874.7	1.2e-28	1	4
ENSLACP00000005044	zf-met	PF12874.7	1.2e-28	2	4
ENSLACP00000005044	zf-met	PF12874.7	1.2e-28	3	4
ENSLACP00000005044	zf-met	PF12874.7	1.2e-28	4	4
ENSLACP00000005044	zf-C2H2_jaz	PF12171.8	1.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000005090	-	1732	XM_006009837	ENSLACP00000005044	554 (aa)	XP_006009899	H3A5X3

Gene Model

Click here to download ENSLACG00000004486's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000004486's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000004486	-	64	36.648	ENSACIG00000003672	-	52	36.782	Amphilophus_citrinellus
ENSLACG00000004486	-	57	40.062	ENSONIG00000020374	-	63	40.063	Oreochromis_niloticus
ENSLACG00000004486	-	67	36.800	ENSOMEG00000002792	-	90	33.578	Oryzias_melastigma
ENSLACG00000004486	-	53	50.340	ENSPKIG00000016531	-	93	38.194	Paramormyrops_kingsleyae
ENSLACG00000004486	-	95	32.194	ENSPFOG00000010723	-	85	31.485	Poecilia_formosa
ENSLACG00000004486	-	95	32.200	ENSPLAG00000012038	-	96	32.265	Poecilia_latipinna
ENSLACG00000004486	-	52	38.326	ENSPREG00000020523	-	53	37.987	Poecilia_reticulata
ENSLACG00000004486	-	57	39.937	ENSSLDG00000017802	-	97	32.045	Seriola_lalandi_dorsalis
ENSLACG00000004486	-	56	36.478	ENSXMAG00000002135	-	59	34.605	Xiphophorus_maculatus