EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000004594 (Gene tree)
Gene ID: 102364334
Gene Symbol: RCL1
Alias: RNAC|RPCL1
Full Name: RNA terminal phosphate cyclase like 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 43133 bases
Position: chrJH129674.1:129503-172635
Accession: 102364334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000005173	RTC	PF01137.21	2.2e-55	1	1
ENSLACP00000005172	RTC	PF01137.21	5e-55	1	1
ENSLACP00000005172	RTC_insert	PF05189.13	1.1e-35	1	1
ENSLACP00000005173	RTC_insert	PF05189.13	1.4e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000005218	RCL1-201	1410	XM_006012142	ENSLACP00000005172	322 (aa)	XP_006012204	H3A6A1
ENSLACT00000005219	RCL1-202	1110	-	ENSLACP00000005173	370 (aa)	-	H3A6A2

Gene Model

Click here to download ENSLACG00000004594's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000004594's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000004594	RCL1	98	85.489	ENSG00000120158	RCL1	96	85.496	Homo_sapiens
ENSLACG00000004594	RCL1	100	79.814	ENSAPOG00000015666	rcl1	93	75.434	Acanthochromis_polyacanthus
ENSLACG00000004594	RCL1	98	86.120	ENSAMEG00000002631	RCL1	91	82.006	Ailuropoda_melanoleuca
ENSLACG00000004594	RCL1	100	78.882	ENSACIG00000021195	rcl1	93	74.277	Amphilophus_citrinellus
ENSLACG00000004594	RCL1	100	78.882	ENSAOCG00000002223	rcl1	93	74.566	Amphiprion_ocellaris
ENSLACG00000004594	RCL1	100	78.882	ENSAPEG00000006905	rcl1	93	74.566	Amphiprion_percula
ENSLACG00000004594	RCL1	100	77.640	ENSATEG00000020026	rcl1	92	73.977	Anabas_testudineus
ENSLACG00000004594	RCL1	87	82.437	ENSAPLG00000006031	RCL1	93	78.000	Anas_platyrhynchos
ENSLACG00000004594	RCL1	99	80.938	ENSACAG00000003640	RCL1	91	77.126	Anolis_carolinensis
ENSLACG00000004594	RCL1	98	85.174	ENSANAG00000037372	RCL1	91	81.121	Aotus_nancymaae
ENSLACG00000004594	RCL1	100	78.571	ENSACLG00000021724	rcl1	93	74.277	Astatotilapia_calliptera
ENSLACG00000004594	RCL1	99	77.743	ENSAMXG00000033394	rcl1	92	73.314	Astyanax_mexicanus
ENSLACG00000004594	RCL1	100	44.272	WBGene00022852	ZK1127.5	92	42.693	Caenorhabditis_elegans
ENSLACG00000004594	RCL1	98	85.489	ENSCJAG00000011202	RCL1	92	85.489	Callithrix_jacchus
ENSLACG00000004594	RCL1	98	85.174	ENSCAFG00000002091	RCL1	91	81.121	Canis_familiaris
ENSLACG00000004594	RCL1	98	84.858	ENSCAFG00020000638	RCL1	74	79.261	Canis_lupus_dingo
ENSLACG00000004594	RCL1	98	83.281	ENSCHIG00000012407	RCL1	91	79.351	Capra_hircus
ENSLACG00000004594	RCL1	86	85.612	ENSTSYG00000009592	RCL1	80	81.000	Carlito_syrichta
ENSLACG00000004594	RCL1	50	72.222	ENSCAPG00000013575	RCL1	68	72.222	Cavia_aperea
ENSLACG00000004594	RCL1	98	85.174	ENSCPOG00000015354	RCL1	91	81.121	Cavia_porcellus
ENSLACG00000004594	RCL1	98	85.804	ENSCCAG00000033505	RCL1	91	81.711	Cebus_capucinus
ENSLACG00000004594	RCL1	98	84.858	ENSCATG00000034721	RCL1	92	80.117	Cercocebus_atys
ENSLACG00000004594	RCL1	98	84.858	ENSCLAG00000007445	RCL1	91	80.826	Chinchilla_lanigera
ENSLACG00000004594	RCL1	98	85.489	ENSCSAG00000008811	RCL1	92	80.702	Chlorocebus_sabaeus
ENSLACG00000004594	RCL1	98	71.203	ENSCHOG00000007216	RCL1	98	71.203	Choloepus_hoffmanni
ENSLACG00000004594	RCL1	98	83.596	ENSCPBG00000025481	RCL1	86	79.000	Chrysemys_picta_bellii
ENSLACG00000004594	RCL1	100	58.385	ENSCING00000019565	-	85	58.385	Ciona_intestinalis
ENSLACG00000004594	RCL1	98	85.489	ENSCANG00000027099	RCL1	92	80.702	Colobus_angolensis_palliatus
ENSLACG00000004594	RCL1	63	30.213	ENSCGRG00001013163	Rtca	70	30.213	Cricetulus_griseus_chok1gshd
ENSLACG00000004594	RCL1	98	85.489	ENSCGRG00001013748	Rcl1	91	81.416	Cricetulus_griseus_chok1gshd
ENSLACG00000004594	RCL1	87	85.663	ENSCGRG00000005843	Rcl1	91	81.063	Cricetulus_griseus_crigri
ENSLACG00000004594	RCL1	100	77.329	ENSCSEG00000000712	rcl1	91	73.199	Cynoglossus_semilaevis
ENSLACG00000004594	RCL1	100	80.124	ENSCVAG00000011536	rcl1	93	75.723	Cyprinodon_variegatus
ENSLACG00000004594	RCL1	98	75.710	ENSDARG00000038312	rcl1	92	71.810	Danio_rerio
ENSLACG00000004594	RCL1	67	86.574	ENSDNOG00000019911	RCL1	90	80.672	Dasypus_novemcinctus
ENSLACG00000004594	RCL1	98	86.751	ENSDORG00000015645	Rcl1	91	82.596	Dipodomys_ordii
ENSLACG00000004594	RCL1	99	54.348	FBgn0020909	Rtc1	89	52.632	Drosophila_melanogaster
ENSLACG00000004594	RCL1	50	91.304	ENSETEG00000014087	-	56	91.304	Echinops_telfairi
ENSLACG00000004594	RCL1	100	53.727	ENSEBUG00000016621	-	89	52.252	Eptatretus_burgeri
ENSLACG00000004594	RCL1	98	84.858	ENSEASG00005010653	RCL1	91	80.826	Equus_asinus_asinus
ENSLACG00000004594	RCL1	98	84.858	ENSECAG00000015973	RCL1	92	82.675	Equus_caballus
ENSLACG00000004594	RCL1	98	76.972	ENSEEUG00000009801	RCL1	92	76.972	Erinaceus_europaeus
ENSLACG00000004594	RCL1	100	76.398	ENSELUG00000007353	rcl1	93	76.543	Esox_lucius
ENSLACG00000004594	RCL1	99	84.062	ENSFCAG00000014557	RCL1	92	80.117	Felis_catus
ENSLACG00000004594	RCL1	100	73.913	ENSFALG00000010553	RCL1	92	70.115	Ficedula_albicollis
ENSLACG00000004594	RCL1	86	83.453	ENSFDAG00000004209	RCL1	92	79.000	Fukomys_damarensis
ENSLACG00000004594	RCL1	100	79.193	ENSFHEG00000011228	rcl1	93	74.855	Fundulus_heteroclitus
ENSLACG00000004594	RCL1	100	77.329	ENSGMOG00000004677	rcl1	92	73.761	Gadus_morhua
ENSLACG00000004594	RCL1	99	79.439	ENSGALG00000015024	RCL1	91	75.731	Gallus_gallus
ENSLACG00000004594	RCL1	100	79.503	ENSGAFG00000007257	rcl1	93	75.145	Gambusia_affinis
ENSLACG00000004594	RCL1	100	78.261	ENSGACG00000017474	rcl1	92	74.269	Gasterosteus_aculeatus
ENSLACG00000004594	RCL1	98	82.965	ENSGAGG00000003689	RCL1	90	79.228	Gopherus_agassizii
ENSLACG00000004594	RCL1	98	85.174	ENSGGOG00000015041	RCL1	91	81.121	Gorilla_gorilla
ENSLACG00000004594	RCL1	100	78.261	ENSHBUG00000001393	rcl1	93	73.988	Haplochromis_burtoni
ENSLACG00000004594	RCL1	100	70.988	ENSHGLG00000005368	-	93	67.236	Heterocephalus_glaber_female
ENSLACG00000004594	RCL1	98	84.858	ENSHGLG00000016452	RCL1	91	80.826	Heterocephalus_glaber_female
ENSLACG00000004594	RCL1	98	77.287	ENSHGLG00100008718	-	90	73.746	Heterocephalus_glaber_male
ENSLACG00000004594	RCL1	100	71.914	ENSHGLG00100018010	-	93	68.091	Heterocephalus_glaber_male
ENSLACG00000004594	RCL1	100	78.261	ENSHCOG00000020170	rcl1	93	73.988	Hippocampus_comes
ENSLACG00000004594	RCL1	100	78.882	ENSIPUG00000018054	RCL1	86	78.882	Ictalurus_punctatus
ENSLACG00000004594	RCL1	98	85.804	ENSSTOG00000000023	RCL1	91	81.711	Ictidomys_tridecemlineatus
ENSLACG00000004594	RCL1	52	63.855	ENSJJAG00000000764	-	88	58.564	Jaculus_jaculus
ENSLACG00000004594	RCL1	98	74.684	ENSJJAG00000015632	-	90	71.091	Jaculus_jaculus
ENSLACG00000004594	RCL1	99	84.688	ENSJJAG00000022803	-	92	80.702	Jaculus_jaculus
ENSLACG00000004594	RCL1	100	79.503	ENSKMAG00000011946	rcl1	92	75.439	Kryptolebias_marmoratus
ENSLACG00000004594	RCL1	100	74.224	ENSLBEG00000003957	rcl1	93	70.231	Labrus_bergylta
ENSLACG00000004594	RCL1	100	82.919	ENSLOCG00000010148	rcl1	92	77.586	Lepisosteus_oculatus
ENSLACG00000004594	RCL1	98	82.965	ENSLAFG00000017495	RCL1	91	79.056	Loxodonta_africana
ENSLACG00000004594	RCL1	98	85.489	ENSMFAG00000037906	RCL1	92	80.702	Macaca_fascicularis
ENSLACG00000004594	RCL1	98	85.489	ENSMNEG00000012288	RCL1	94	85.000	Macaca_nemestrina
ENSLACG00000004594	RCL1	98	85.489	ENSMLEG00000043088	RCL1	92	80.702	Mandrillus_leucophaeus
ENSLACG00000004594	RCL1	100	79.503	ENSMAMG00000008311	rcl1	92	75.731	Mastacembelus_armatus
ENSLACG00000004594	RCL1	100	78.571	ENSMZEG00005017292	rcl1	93	74.277	Maylandia_zebra
ENSLACG00000004594	RCL1	52	80.000	ENSMGAG00000002245	RCL1	84	72.826	Meleagris_gallopavo
ENSLACG00000004594	RCL1	52	87.349	ENSMAUG00000008922	Rcl1	84	79.006	Mesocricetus_auratus
ENSLACG00000004594	RCL1	98	85.489	ENSMICG00000015562	RCL1	91	81.416	Microcebus_murinus
ENSLACG00000004594	RCL1	98	85.174	ENSMOCG00000012145	Rcl1	91	81.121	Microtus_ochrogaster
ENSLACG00000004594	RCL1	100	76.161	ENSMMOG00000021264	rcl1	92	72.303	Mola_mola
ENSLACG00000004594	RCL1	98	84.858	ENSMODG00000015377	RCL1	90	80.826	Monodelphis_domestica
ENSLACG00000004594	RCL1	100	78.261	ENSMALG00000018618	rcl1	92	74.561	Monopterus_albus
ENSLACG00000004594	RCL1	98	85.489	MGP_CAROLIEiJ_G0022853	Rcl1	91	81.121	Mus_caroli
ENSLACG00000004594	RCL1	98	85.174	ENSMUSG00000024785	Rcl1	91	80.826	Mus_musculus
ENSLACG00000004594	RCL1	98	85.174	MGP_PahariEiJ_G0014346	Rcl1	91	81.121	Mus_pahari
ENSLACG00000004594	RCL1	98	85.174	MGP_SPRETEiJ_G0023771	Rcl1	91	80.826	Mus_spretus
ENSLACG00000004594	RCL1	99	84.375	ENSMPUG00000004998	RCL1	92	80.409	Mustela_putorius_furo
ENSLACG00000004594	RCL1	98	85.174	ENSMLUG00000009654	RCL1	91	81.121	Myotis_lucifugus
ENSLACG00000004594	RCL1	98	84.858	ENSNGAG00000015327	Rcl1	92	80.175	Nannospalax_galili
ENSLACG00000004594	RCL1	91	77.474	ENSNBRG00000019854	rcl1	88	70.482	Neolamprologus_brichardi
ENSLACG00000004594	RCL1	98	85.489	ENSNLEG00000008891	RCL1	87	85.489	Nomascus_leucogenys
ENSLACG00000004594	RCL1	98	77.918	ENSMEUG00000007653	RCL1	91	74.336	Notamacropus_eugenii
ENSLACG00000004594	RCL1	98	84.858	ENSOPRG00000010965	RCL1	91	81.121	Ochotona_princeps
ENSLACG00000004594	RCL1	87	67.845	ENSODEG00000004151	RCL1	87	65.781	Octodon_degus
ENSLACG00000004594	RCL1	100	78.571	ENSONIG00000003871	rcl1	93	74.277	Oreochromis_niloticus
ENSLACG00000004594	RCL1	62	82.353	ENSOANG00000013193	-	89	76.549	Ornithorhynchus_anatinus
ENSLACG00000004594	RCL1	98	85.804	ENSOCUG00000008161	RCL1	91	81.711	Oryctolagus_cuniculus
ENSLACG00000004594	RCL1	100	76.708	ENSORLG00000010443	rcl1	93	72.543	Oryzias_latipes
ENSLACG00000004594	RCL1	100	76.708	ENSORLG00020012211	rcl1	93	72.543	Oryzias_latipes_hni
ENSLACG00000004594	RCL1	100	76.087	ENSORLG00015001122	rcl1	93	71.965	Oryzias_latipes_hsok
ENSLACG00000004594	RCL1	100	78.571	ENSOMEG00000022976	rcl1	82	74.277	Oryzias_melastigma
ENSLACG00000004594	RCL1	99	84.688	ENSOGAG00000007480	RCL1	92	80.702	Otolemur_garnettii
ENSLACG00000004594	RCL1	98	83.281	ENSOARG00000013463	RCL1	91	79.351	Ovis_aries
ENSLACG00000004594	RCL1	98	85.174	ENSPPAG00000037958	RCL1	91	81.121	Pan_paniscus
ENSLACG00000004594	RCL1	99	83.438	ENSPPRG00000022645	RCL1	92	79.532	Panthera_pardus
ENSLACG00000004594	RCL1	86	84.477	ENSPTIG00000019031	RCL1	84	78.453	Panthera_tigris_altaica
ENSLACG00000004594	RCL1	98	84.858	ENSPTRG00000020743	RCL1	91	80.826	Pan_troglodytes
ENSLACG00000004594	RCL1	98	85.489	ENSPANG00000025151	RCL1	92	80.702	Papio_anubis
ENSLACG00000004594	RCL1	100	78.571	ENSPKIG00000021022	rcl1	92	74.561	Paramormyrops_kingsleyae
ENSLACG00000004594	RCL1	87	83.154	ENSPSIG00000012302	RCL1	91	79.333	Pelodiscus_sinensis
ENSLACG00000004594	RCL1	100	76.398	ENSPMGG00000024007	rcl1	93	72.254	Periophthalmus_magnuspinnatus
ENSLACG00000004594	RCL1	98	85.489	ENSPEMG00000023275	Rcl1	91	81.416	Peromyscus_maniculatus_bairdii
ENSLACG00000004594	RCL1	92	30.000	ENSPMAG00000009110	rtca	80	30.033	Petromyzon_marinus
ENSLACG00000004594	RCL1	98	85.174	ENSPCIG00000000188	RCL1	91	81.121	Phascolarctos_cinereus
ENSLACG00000004594	RCL1	100	79.503	ENSPFOG00000019682	rcl1	92	75.434	Poecilia_formosa
ENSLACG00000004594	RCL1	100	79.503	ENSPLAG00000022354	rcl1	93	75.362	Poecilia_latipinna
ENSLACG00000004594	RCL1	100	79.503	ENSPMEG00000008131	rcl1	93	75.362	Poecilia_mexicana
ENSLACG00000004594	RCL1	100	79.193	ENSPREG00000008032	rcl1	93	75.072	Poecilia_reticulata
ENSLACG00000004594	RCL1	98	85.174	ENSPPYG00000019244	RCL1	91	81.121	Pongo_abelii
ENSLACG00000004594	RCL1	93	82.392	ENSPCAG00000001440	RCL1	81	82.392	Procavia_capensis
ENSLACG00000004594	RCL1	99	85.000	ENSPCOG00000009611	RCL1	92	80.994	Propithecus_coquereli
ENSLACG00000004594	RCL1	98	85.174	ENSPVAG00000015752	RCL1	91	81.121	Pteropus_vampyrus
ENSLACG00000004594	RCL1	100	78.571	ENSPNYG00000012910	rcl1	93	74.277	Pundamilia_nyererei
ENSLACG00000004594	RCL1	99	78.370	ENSPNAG00000028307	rcl1	79	78.370	Pygocentrus_nattereri
ENSLACG00000004594	RCL1	98	85.174	ENSRNOG00000015491	Rcl1	91	80.826	Rattus_norvegicus
ENSLACG00000004594	RCL1	98	85.489	ENSRBIG00000035818	RCL1	92	80.702	Rhinopithecus_bieti
ENSLACG00000004594	RCL1	98	85.489	ENSRROG00000029781	RCL1	92	80.702	Rhinopithecus_roxellana
ENSLACG00000004594	RCL1	95	39.482	YOL010W	-	84	39.172	Saccharomyces_cerevisiae
ENSLACG00000004594	RCL1	98	85.174	ENSSBOG00000026369	RCL1	91	81.121	Saimiri_boliviensis_boliviensis
ENSLACG00000004594	RCL1	87	84.342	ENSSHAG00000014086	RCL1	92	79.868	Sarcophilus_harrisii
ENSLACG00000004594	RCL1	100	81.988	ENSSFOG00015023020	rcl1	92	78.070	Scleropages_formosus
ENSLACG00000004594	RCL1	100	78.571	ENSSMAG00000019751	rcl1	80	74.352	Scophthalmus_maximus
ENSLACG00000004594	RCL1	100	79.814	ENSSDUG00000006349	rcl1	93	75.434	Seriola_dumerili
ENSLACG00000004594	RCL1	100	79.814	ENSSLDG00000022076	rcl1	93	75.434	Seriola_lalandi_dorsalis
ENSLACG00000004594	RCL1	98	85.174	ENSSARG00000009260	RCL1	91	81.121	Sorex_araneus
ENSLACG00000004594	RCL1	99	82.188	ENSSPUG00000016330	RCL1	91	78.299	Sphenodon_punctatus
ENSLACG00000004594	RCL1	100	78.571	ENSSPAG00000018038	rcl1	92	74.854	Stegastes_partitus
ENSLACG00000004594	RCL1	98	85.174	ENSSSCG00000005217	RCL1	78	79.261	Sus_scrofa
ENSLACG00000004594	RCL1	99	80.745	ENSTGUG00000005138	RCL1	91	76.968	Taeniopygia_guttata
ENSLACG00000004594	RCL1	100	77.640	ENSTRUG00000010493	rcl1	93	73.410	Takifugu_rubripes
ENSLACG00000004594	RCL1	100	75.466	ENSTNIG00000013214	rcl1	91	71.930	Tetraodon_nigroviridis
ENSLACG00000004594	RCL1	98	78.549	ENSTBEG00000016339	RCL1	91	74.926	Tupaia_belangeri
ENSLACG00000004594	RCL1	98	83.912	ENSTTRG00000016525	RCL1	91	79.941	Tursiops_truncatus
ENSLACG00000004594	RCL1	98	86.120	ENSUAMG00000005598	RCL1	98	86.120	Ursus_americanus
ENSLACG00000004594	RCL1	86	85.560	ENSUMAG00000017890	RCL1	89	80.667	Ursus_maritimus
ENSLACG00000004594	RCL1	86	85.971	ENSVPAG00000009188	RCL1	92	81.333	Vicugna_pacos
ENSLACG00000004594	RCL1	87	85.305	ENSVVUG00000007304	RCL1	81	80.731	Vulpes_vulpes
ENSLACG00000004594	RCL1	98	77.987	ENSXETG00000000592	rcl1	85	77.987	Xenopus_tropicalis
ENSLACG00000004594	RCL1	100	79.503	ENSXCOG00000004922	rcl1	93	75.362	Xiphophorus_couchianus
ENSLACG00000004594	RCL1	100	79.503	ENSXMAG00000022366	RCL1	93	75.362	Xiphophorus_maculatus