EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000005007 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 3756 bases
Position: chrJH127995.1:147820-151575
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000005634	RVT_1	PF00078.27	1.1e-25	1	1
ENSLACP00000005635	RVT_1	PF00078.27	3.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000005683	-	1935	-	ENSLACP00000005634	645 (aa)	-	H3A7L3
ENSLACT00000005684	-	1884	-	ENSLACP00000005635	628 (aa)	-	H3A7L4

Gene Model

Click here to download ENSLACG00000005007's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000005007's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000005007	-	99	38.022	ENSLACG00000018380	-	100	35.294
ENSLACG00000005007	-	100	36.604	ENSLACG00000011272	-	90	37.072
ENSLACG00000005007	-	98	31.646	ENSLACG00000003991	-	73	31.529
ENSLACG00000005007	-	99	46.241	ENSLACG00000016980	-	75	46.241
ENSLACG00000005007	-	74	52.000	ENSLACG00000002665	-	74	41.388
ENSLACG00000005007	-	90	37.990	ENSLACG00000002512	-	99	37.415
ENSLACG00000005007	-	59	32.889	ENSLACG00000009347	-	60	32.889
ENSLACG00000005007	-	99	33.538	ENSLACG00000015558	-	91	33.538
ENSLACG00000005007	-	75	31.679	ENSLACG00000007522	-	84	32.210
ENSLACG00000005007	-	95	35.538	ENSLACG00000008366	-	98	35.648
ENSLACG00000005007	-	99	38.321	ENSLACG00000004343	-	92	36.667
ENSLACG00000005007	-	97	74.841	ENSLACG00000009011	-	98	71.662
ENSLACG00000005007	-	89	31.818	ENSLACG00000009524	-	67	32.468

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000005007	-	79	30.916	ENSATEG00000006997	-	58	30.916	Anabas_testudineus
ENSLACG00000005007	-	91	31.013	ENSATEG00000019692	-	52	31.013	Anabas_testudineus
ENSLACG00000005007	-	96	32.092	ENSATEG00000018698	-	54	33.230	Anabas_testudineus
ENSLACG00000005007	-	82	33.068	ENSACLG00000024556	-	65	33.068	Astatotilapia_calliptera
ENSLACG00000005007	-	98	31.579	ENSACLG00000016581	-	55	31.579	Astatotilapia_calliptera
ENSLACG00000005007	-	94	31.884	ENSACLG00000013947	-	56	33.013	Astatotilapia_calliptera
ENSLACG00000005007	-	81	32.601	ENSAMXG00000033197	-	75	32.601	Astyanax_mexicanus
ENSLACG00000005007	-	87	32.203	ENSAMXG00000035923	-	73	32.203	Astyanax_mexicanus
ENSLACG00000005007	-	89	32.595	ENSAMXG00000039114	-	57	32.595	Astyanax_mexicanus
ENSLACG00000005007	-	73	32.319	ENSAMXG00000041896	-	68	32.319	Astyanax_mexicanus
ENSLACG00000005007	-	68	31.741	ENSAMXG00000043821	-	62	31.864	Astyanax_mexicanus
ENSLACG00000005007	-	50	30.061	ENSAMXG00000043469	-	68	30.061	Astyanax_mexicanus
ENSLACG00000005007	-	85	32.035	ENSAMXG00000038033	-	56	32.035	Astyanax_mexicanus
ENSLACG00000005007	-	89	31.875	ENSAMXG00000030022	-	50	31.875	Astyanax_mexicanus
ENSLACG00000005007	-	99	33.333	ENSAMXG00000033912	-	51	33.333	Astyanax_mexicanus
ENSLACG00000005007	-	92	31.861	ENSAMXG00000041114	-	63	32.601	Astyanax_mexicanus
ENSLACG00000005007	-	89	32.035	ENSAMXG00000032559	-	50	32.035	Astyanax_mexicanus
ENSLACG00000005007	-	93	31.845	ENSAMXG00000034382	-	53	31.845	Astyanax_mexicanus
ENSLACG00000005007	-	68	30.400	ENSCING00000021231	-	61	30.400	Ciona_intestinalis
ENSLACG00000005007	-	88	32.746	ENSCVAG00000020907	-	79	32.746	Cyprinodon_variegatus
ENSLACG00000005007	-	61	31.214	ENSGALG00000044734	-	62	31.214	Gallus_gallus
ENSLACG00000005007	-	53	30.435	ENSGAGG00000013650	-	57	30.769	Gopherus_agassizii
ENSLACG00000005007	-	65	31.250	ENSGAGG00000007552	-	66	31.250	Gopherus_agassizii
ENSLACG00000005007	-	76	32.659	ENSGAGG00000002613	-	64	32.923	Gopherus_agassizii
ENSLACG00000005007	-	97	32.126	ENSLOCG00000009957	-	74	32.126	Lepisosteus_oculatus
ENSLACG00000005007	-	84	34.483	ENSMAMG00000021634	-	77	34.483	Mastacembelus_armatus
ENSLACG00000005007	-	85	32.271	ENSMZEG00005024252	-	58	33.514	Maylandia_zebra
ENSLACG00000005007	-	80	31.336	ENSORLG00000028879	-	56	31.336	Oryzias_latipes
ENSLACG00000005007	-	78	30.508	ENSORLG00000024878	-	55	30.508	Oryzias_latipes
ENSLACG00000005007	-	87	30.415	ENSORLG00000025397	-	54	31.962	Oryzias_latipes
ENSLACG00000005007	-	82	31.336	ENSORLG00020000592	-	63	31.336	Oryzias_latipes_hni
ENSLACG00000005007	-	79	34.100	ENSORLG00020018561	-	55	34.100	Oryzias_latipes_hni
ENSLACG00000005007	-	81	30.415	ENSORLG00020009084	-	71	30.415	Oryzias_latipes_hni
ENSLACG00000005007	-	83	31.250	ENSORLG00020016695	-	72	31.250	Oryzias_latipes_hni
ENSLACG00000005007	-	85	31.065	ENSORLG00015012565	-	51	32.014	Oryzias_latipes_hsok
ENSLACG00000005007	-	95	32.759	ENSORLG00015022011	-	54	33.548	Oryzias_latipes_hsok
ENSLACG00000005007	-	93	31.562	ENSORLG00015000130	-	53	31.562	Oryzias_latipes_hsok
ENSLACG00000005007	-	71	34.274	ENSORLG00015010510	-	72	34.274	Oryzias_latipes_hsok
ENSLACG00000005007	-	90	31.023	ENSORLG00015008388	-	63	30.503	Oryzias_latipes_hsok
ENSLACG00000005007	-	97	31.856	ENSOMEG00000012600	-	70	33.010	Oryzias_melastigma
ENSLACG00000005007	-	61	34.783	ENSOMEG00000005634	-	52	34.783	Oryzias_melastigma
ENSLACG00000005007	-	59	34.146	ENSOMEG00000013479	-	63	34.146	Oryzias_melastigma
ENSLACG00000005007	-	89	37.768	ENSPKIG00000021090	-	68	37.768	Paramormyrops_kingsleyae
ENSLACG00000005007	-	94	33.230	ENSPKIG00000013293	-	55	33.230	Paramormyrops_kingsleyae
ENSLACG00000005007	-	85	33.333	ENSPKIG00000007924	-	59	33.333	Paramormyrops_kingsleyae
ENSLACG00000005007	-	83	32.889	ENSPKIG00000006120	-	58	33.603	Paramormyrops_kingsleyae
ENSLACG00000005007	-	52	36.474	ENSPSIG00000001205	-	69	36.474	Pelodiscus_sinensis
ENSLACG00000005007	-	52	31.193	ENSPSIG00000001197	-	79	31.193	Pelodiscus_sinensis
ENSLACG00000005007	-	51	31.902	ENSPSIG00000001249	-	92	31.902	Pelodiscus_sinensis
ENSLACG00000005007	-	61	33.898	ENSPSIG00000001150	-	51	33.898	Pelodiscus_sinensis
ENSLACG00000005007	-	73	34.462	ENSPSIG00000001614	-	68	34.462	Pelodiscus_sinensis
ENSLACG00000005007	-	53	44.571	ENSPSIG00000001136	-	66	45.342	Pelodiscus_sinensis
ENSLACG00000005007	-	96	31.285	ENSPMEG00000023031	-	54	32.484	Poecilia_mexicana
ENSLACG00000005007	-	86	32.107	ENSPREG00000006052	-	51	32.107	Poecilia_reticulata
ENSLACG00000005007	-	96	30.000	ENSPREG00000006122	-	78	30.000	Poecilia_reticulata
ENSLACG00000005007	-	65	30.667	ENSPREG00000006650	-	74	30.667	Poecilia_reticulata
ENSLACG00000005007	-	78	30.449	ENSPREG00000006496	-	72	30.449	Poecilia_reticulata
ENSLACG00000005007	-	93	31.686	ENSPNAG00000021509	-	61	31.657	Pygocentrus_nattereri
ENSLACG00000005007	-	93	31.776	ENSSDUG00000010009	-	60	31.776	Seriola_dumerili
ENSLACG00000005007	-	95	33.036	ENSSLDG00000003503	-	57	33.036	Seriola_lalandi_dorsalis
ENSLACG00000005007	-	71	30.043	ENSTRUG00000021236	-	71	30.043	Takifugu_rubripes
ENSLACG00000005007	-	92	31.624	ENSXMAG00000026865	-	50	31.624	Xiphophorus_maculatus
ENSLACG00000005007	-	66	32.292	ENSXMAG00000025957	-	74	32.292	Xiphophorus_maculatus
ENSLACG00000005007	-	96	31.742	ENSXMAG00000022159	-	50	32.047	Xiphophorus_maculatus