EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000005334 (Gene tree)
Gene ID: 102358000
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 135672 bases
Position: chrJH127870.1:163018-298689
Accession: 102358000
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000006009	R3H	PF01424.22	8.4e-12	1	1
ENSLACP00000006008	R3H	PF01424.22	8.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000006060	R3HDM1-201	4638	XM_006006175	ENSLACP00000006008	1107 (aa)	XP_006006237	H3A8N7
ENSLACT00000006061	R3HDM1-202	3234	XM_006006185	ENSLACP00000006009	1077 (aa)	XP_006006247	H3A8N8

Gene Model

Click here to download ENSLACG00000005334's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000005334's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000005334	R3HDM1	99	50.000	ENSLACG00000019064	r3hdm2	94	66.954
ENSLACG00000005334	R3HDM1	61	50.074	ENSLACG00000006737	ARPP21	100	45.874

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000005334	R3HDM1	100	71.208	ENSG00000048991	R3HDM1	97	90.541	Homo_sapiens
ENSLACG00000005334	R3HDM1	89	62.648	ENSAPOG00000020850	r3hdm1	89	63.357	Acanthochromis_polyacanthus
ENSLACG00000005334	R3HDM1	100	71.532	ENSAMEG00000014886	R3HDM1	95	71.480	Ailuropoda_melanoleuca
ENSLACG00000005334	R3HDM1	87	51.816	ENSAOCG00000005192	r3hdm1	98	62.884	Amphiprion_ocellaris
ENSLACG00000005334	R3HDM1	89	56.905	ENSAPEG00000016108	r3hdm1	98	57.619	Amphiprion_percula
ENSLACG00000005334	R3HDM1	89	57.857	ENSATEG00000000232	r3hdm1	91	58.571	Anabas_testudineus
ENSLACG00000005334	R3HDM1	99	76.362	ENSAPLG00000015231	R3HDM1	95	75.760	Anas_platyrhynchos
ENSLACG00000005334	R3HDM1	100	76.572	ENSACAG00000001676	R3HDM1	95	75.676	Anolis_carolinensis
ENSLACG00000005334	R3HDM1	100	71.143	ENSANAG00000035334	R3HDM1	96	71.157	Aotus_nancymaae
ENSLACG00000005334	R3HDM1	84	49.431	ENSACLG00000027282	r3hdm1	94	49.483	Astatotilapia_calliptera
ENSLACG00000005334	R3HDM1	100	73.861	ENSAMXG00000012861	R3HDM1	94	77.654	Astyanax_mexicanus
ENSLACG00000005334	R3HDM1	92	72.269	ENSAMXG00000003536	r3hdm1	93	71.989	Astyanax_mexicanus
ENSLACG00000005334	R3HDM1	68	38.380	ENSAMXG00000020587	arpp21	84	56.911	Astyanax_mexicanus
ENSLACG00000005334	R3HDM1	100	79.177	ENSBTAG00000013302	R3HDM1	95	73.689	Bos_taurus
ENSLACG00000005334	R3HDM1	100	70.818	ENSCJAG00000011718	R3HDM1	96	70.817	Callithrix_jacchus
ENSLACG00000005334	R3HDM1	100	71.895	ENSCAFG00000005075	R3HDM1	95	71.751	Canis_familiaris
ENSLACG00000005334	R3HDM1	100	74.433	ENSCAFG00020016119	R3HDM1	95	73.897	Canis_lupus_dingo
ENSLACG00000005334	R3HDM1	100	74.361	ENSCHIG00000020851	R3HDM1	95	73.732	Capra_hircus
ENSLACG00000005334	R3HDM1	100	71.855	ENSCPOG00000012784	R3HDM1	100	70.779	Cavia_porcellus
ENSLACG00000005334	R3HDM1	100	71.026	ENSCCAG00000027199	R3HDM1	94	85.484	Cebus_capucinus
ENSLACG00000005334	R3HDM1	100	73.206	ENSCATG00000023642	R3HDM1	94	85.161	Cercocebus_atys
ENSLACG00000005334	R3HDM1	100	72.011	ENSCLAG00000007962	R3HDM1	100	73.052	Chinchilla_lanigera
ENSLACG00000005334	R3HDM1	100	73.206	ENSCSAG00000016356	R3HDM1	95	73.388	Chlorocebus_sabaeus
ENSLACG00000005334	R3HDM1	87	62.778	ENSCHOG00000013638	R3HDM1	85	62.778	Choloepus_hoffmanni
ENSLACG00000005334	R3HDM1	84	90.809	ENSCPBG00000009645	R3HDM1	100	90.775	Chrysemys_picta_bellii
ENSLACG00000005334	R3HDM1	100	70.962	ENSCANG00000034748	R3HDM1	95	70.551	Colobus_angolensis_palliatus
ENSLACG00000005334	R3HDM1	99	72.167	ENSCGRG00001012357	R3hdm1	92	71.532	Cricetulus_griseus_chok1gshd
ENSLACG00000005334	R3HDM1	100	72.267	ENSCGRG00000012080	R3hdm1	100	75.000	Cricetulus_griseus_crigri
ENSLACG00000005334	R3HDM1	88	45.678	ENSCSEG00000008944	r3hdm1	85	67.742	Cynoglossus_semilaevis
ENSLACG00000005334	R3HDM1	87	50.149	ENSCVAG00000007582	r3hdm1	95	51.087	Cyprinodon_variegatus
ENSLACG00000005334	R3HDM1	68	37.237	ENSDARG00000061081	arpp21	88	37.429	Danio_rerio
ENSLACG00000005334	R3HDM1	100	69.217	ENSDNOG00000000771	R3HDM1	95	69.056	Dasypus_novemcinctus
ENSLACG00000005334	R3HDM1	90	80.760	ENSETEG00000013606	R3HDM1	94	63.753	Echinops_telfairi
ENSLACG00000005334	R3HDM1	100	74.340	ENSEASG00005007392	R3HDM1	95	83.799	Equus_asinus_asinus
ENSLACG00000005334	R3HDM1	100	74.205	ENSECAG00000019114	R3HDM1	95	73.766	Equus_caballus
ENSLACG00000005334	R3HDM1	80	76.497	ENSEEUG00000012589	R3HDM1	77	76.497	Erinaceus_europaeus
ENSLACG00000005334	R3HDM1	91	54.264	ENSELUG00000014413	r3hdm1	87	77.256	Esox_lucius
ENSLACG00000005334	R3HDM1	89	65.829	ENSELUG00000004909	R3HDM1	99	55.874	Esox_lucius
ENSLACG00000005334	R3HDM1	100	74.340	ENSFCAG00000027113	R3HDM1	95	83.799	Felis_catus
ENSLACG00000005334	R3HDM1	73	75.597	ENSFALG00000013731	R3HDM1	89	70.189	Ficedula_albicollis
ENSLACG00000005334	R3HDM1	100	72.127	ENSFDAG00000016478	R3HDM1	100	74.026	Fukomys_damarensis
ENSLACG00000005334	R3HDM1	83	61.905	ENSFHEG00000018713	r3hdm1	95	50.789	Fundulus_heteroclitus
ENSLACG00000005334	R3HDM1	63	69.807	ENSGMOG00000006042	-	82	65.314	Gadus_morhua
ENSLACG00000005334	R3HDM1	100	71.811	ENSGALG00000012246	R3HDM1	99	80.968	Gallus_gallus
ENSLACG00000005334	R3HDM1	83	49.167	ENSGAFG00000006203	r3hdm1	94	49.429	Gambusia_affinis
ENSLACG00000005334	R3HDM1	91	51.727	ENSGACG00000014925	r3hdm1	99	52.111	Gasterosteus_aculeatus
ENSLACG00000005334	R3HDM1	99	78.185	ENSGAGG00000007840	R3HDM1	100	74.576	Gopherus_agassizii
ENSLACG00000005334	R3HDM1	100	71.117	ENSGGOG00000008156	R3HDM1	94	85.806	Gorilla_gorilla
ENSLACG00000005334	R3HDM1	100	72.843	ENSHGLG00000015718	R3HDM1	100	73.377	Heterocephalus_glaber_female
ENSLACG00000005334	R3HDM1	94	55.556	ENSHGLG00100015374	-	95	55.266	Heterocephalus_glaber_male
ENSLACG00000005334	R3HDM1	100	72.661	ENSHGLG00100003184	-	100	73.701	Heterocephalus_glaber_male
ENSLACG00000005334	R3HDM1	83	45.791	ENSHCOG00000013366	r3hdm1	88	60.396	Hippocampus_comes
ENSLACG00000005334	R3HDM1	90	66.176	ENSIPUG00000013629	r3hdm1	94	69.775	Ictalurus_punctatus
ENSLACG00000005334	R3HDM1	80	74.499	ENSIPUG00000001676	R3HDM1	94	74.425	Ictalurus_punctatus
ENSLACG00000005334	R3HDM1	61	39.769	ENSIPUG00000020552	arpp21	84	44.582	Ictalurus_punctatus
ENSLACG00000005334	R3HDM1	100	73.115	ENSSTOG00000007572	R3HDM1	100	73.701	Ictidomys_tridecemlineatus
ENSLACG00000005334	R3HDM1	99	72.340	ENSLOCG00000001641	r3hdm1	95	72.576	Lepisosteus_oculatus
ENSLACG00000005334	R3HDM1	100	74.047	ENSLAFG00000009065	R3HDM1	95	74.229	Loxodonta_africana
ENSLACG00000005334	R3HDM1	100	71.117	ENSMFAG00000030331	R3HDM1	94	85.806	Macaca_fascicularis
ENSLACG00000005334	R3HDM1	100	70.936	ENSMMUG00000009844	R3HDM1	94	85.806	Macaca_mulatta
ENSLACG00000005334	R3HDM1	100	71.026	ENSMNEG00000027793	R3HDM1	94	85.806	Macaca_nemestrina
ENSLACG00000005334	R3HDM1	100	71.117	ENSMLEG00000043189	R3HDM1	94	85.806	Mandrillus_leucophaeus
ENSLACG00000005334	R3HDM1	89	61.229	ENSMAMG00000004532	r3hdm1	91	61.939	Mastacembelus_armatus
ENSLACG00000005334	R3HDM1	87	51.028	ENSMZEG00005003157	r3hdm1	91	62.648	Maylandia_zebra
ENSLACG00000005334	R3HDM1	99	76.221	ENSMGAG00000012461	R3HDM1	95	75.207	Meleagris_gallopavo
ENSLACG00000005334	R3HDM1	100	72.072	ENSMAUG00000010315	R3hdm1	100	75.000	Mesocricetus_auratus
ENSLACG00000005334	R3HDM1	100	70.136	ENSMICG00000005900	-	97	69.646	Microcebus_murinus
ENSLACG00000005334	R3HDM1	96	54.029	ENSMICG00000042655	-	100	56.868	Microcebus_murinus
ENSLACG00000005334	R3HDM1	90	76.887	ENSMODG00000000923	R3HDM1	92	74.850	Monodelphis_domestica
ENSLACG00000005334	R3HDM1	99	61.995	ENSMALG00000009000	r3hdm1	92	62.708	Monopterus_albus
ENSLACG00000005334	R3HDM1	99	72.157	MGP_CAROLIEiJ_G0014543	R3hdm1	100	74.675	Mus_caroli
ENSLACG00000005334	R3HDM1	99	71.975	ENSMUSG00000056211	R3hdm1	100	74.675	Mus_musculus
ENSLACG00000005334	R3HDM1	99	71.520	MGP_PahariEiJ_G0027779	R3hdm1	100	74.675	Mus_pahari
ENSLACG00000005334	R3HDM1	99	71.884	MGP_SPRETEiJ_G0015350	R3hdm1	100	74.675	Mus_spretus
ENSLACG00000005334	R3HDM1	100	71.480	ENSMPUG00000002412	R3HDM1	95	71.274	Mustela_putorius_furo
ENSLACG00000005334	R3HDM1	100	78.935	ENSMLUG00000013824	R3HDM1	95	70.297	Myotis_lucifugus
ENSLACG00000005334	R3HDM1	100	71.117	ENSNLEG00000008622	R3HDM1	94	85.806	Nomascus_leucogenys
ENSLACG00000005334	R3HDM1	84	78.088	ENSMEUG00000011784	R3HDM1	89	77.689	Notamacropus_eugenii
ENSLACG00000005334	R3HDM1	100	71.416	ENSODEG00000008607	R3HDM1	100	74.026	Octodon_degus
ENSLACG00000005334	R3HDM1	99	48.239	ENSONIG00000012017	r3hdm1	99	47.937	Oreochromis_niloticus
ENSLACG00000005334	R3HDM1	100	72.852	ENSOANG00000007987	R3HDM1	95	72.587	Ornithorhynchus_anatinus
ENSLACG00000005334	R3HDM1	89	70.306	ENSOCUG00000017366	R3HDM1	92	70.336	Oryctolagus_cuniculus
ENSLACG00000005334	R3HDM1	87	49.197	ENSORLG00000004297	r3hdm1	90	63.202	Oryzias_latipes
ENSLACG00000005334	R3HDM1	87	49.299	ENSORLG00015017355	r3hdm1	99	47.181	Oryzias_latipes_hsok
ENSLACG00000005334	R3HDM1	100	70.545	ENSOGAG00000003136	R3HDM1	95	70.663	Otolemur_garnettii
ENSLACG00000005334	R3HDM1	100	71.872	ENSOARG00000010788	R3HDM1	95	71.364	Ovis_aries
ENSLACG00000005334	R3HDM1	100	71.079	ENSPPAG00000027858	R3HDM1	96	70.688	Pan_paniscus
ENSLACG00000005334	R3HDM1	100	71.520	ENSPPRG00000002626	R3HDM1	94	85.484	Panthera_pardus
ENSLACG00000005334	R3HDM1	100	71.520	ENSPTIG00000016581	R3HDM1	94	85.806	Panthera_tigris_altaica
ENSLACG00000005334	R3HDM1	100	70.988	ENSPTRG00000012494	R3HDM1	96	70.688	Pan_troglodytes
ENSLACG00000005334	R3HDM1	100	71.117	ENSPANG00000026448	R3HDM1	94	85.806	Papio_anubis
ENSLACG00000005334	R3HDM1	92	75.833	ENSPKIG00000004328	r3hdm1	91	78.135	Paramormyrops_kingsleyae
ENSLACG00000005334	R3HDM1	99	73.597	ENSPSIG00000012915	R3HDM1	95	74.105	Pelodiscus_sinensis
ENSLACG00000005334	R3HDM1	99	72.338	ENSPEMG00000015187	R3hdm1	100	74.675	Peromyscus_maniculatus_bairdii
ENSLACG00000005334	R3HDM1	100	75.982	ENSPCIG00000002491	R3HDM1	95	76.296	Phascolarctos_cinereus
ENSLACG00000005334	R3HDM1	87	50.640	ENSPFOG00000015036	r3hdm1	95	51.133	Poecilia_formosa
ENSLACG00000005334	R3HDM1	83	48.960	ENSPLAG00000018042	r3hdm1	94	49.168	Poecilia_latipinna
ENSLACG00000005334	R3HDM1	83	49.324	ENSPMEG00000023947	r3hdm1	94	49.428	Poecilia_mexicana
ENSLACG00000005334	R3HDM1	88	50.980	ENSPREG00000007902	r3hdm1	86	64.423	Poecilia_reticulata
ENSLACG00000005334	R3HDM1	100	70.145	ENSPPYG00000012815	R3HDM1	95	70.145	Pongo_abelii
ENSLACG00000005334	R3HDM1	95	70.321	ENSPCAG00000006208	R3HDM1	94	73.887	Procavia_capensis
ENSLACG00000005334	R3HDM1	100	68.659	ENSPCOG00000012698	R3HDM1	94	71.330	Propithecus_coquereli
ENSLACG00000005334	R3HDM1	100	63.587	ENSPVAG00000006098	R3HDM1	95	63.587	Pteropus_vampyrus
ENSLACG00000005334	R3HDM1	92	73.864	ENSPNAG00000013952	r3hdm1	93	73.371	Pygocentrus_nattereri
ENSLACG00000005334	R3HDM1	88	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSLACG00000005334	R3HDM1	53	58.400	ENSPNAG00000004162	arpp21	78	58.400	Pygocentrus_nattereri
ENSLACG00000005334	R3HDM1	99	71.429	ENSRNOG00000004099	R3hdm1	95	70.683	Rattus_norvegicus
ENSLACG00000005334	R3HDM1	94	68.953	ENSRBIG00000033317	R3HDM1	100	71.161	Rhinopithecus_bieti
ENSLACG00000005334	R3HDM1	94	68.953	ENSRROG00000034534	R3HDM1	96	71.157	Rhinopithecus_roxellana
ENSLACG00000005334	R3HDM1	100	71.026	ENSSBOG00000020389	R3HDM1	94	85.806	Saimiri_boliviensis_boliviensis
ENSLACG00000005334	R3HDM1	100	74.220	ENSSHAG00000016999	R3HDM1	95	73.723	Sarcophilus_harrisii
ENSLACG00000005334	R3HDM1	99	58.510	ENSSFOG00015019851	-	92	67.647	Scleropages_formosus
ENSLACG00000005334	R3HDM1	100	73.317	ENSSFOG00015014134	r3hdm1	94	79.772	Scleropages_formosus
ENSLACG00000005334	R3HDM1	98	45.263	ENSSMAG00000001669	r3hdm1	95	45.702	Scophthalmus_maximus
ENSLACG00000005334	R3HDM1	88	48.738	ENSSDUG00000010749	r3hdm1	95	49.031	Seriola_dumerili
ENSLACG00000005334	R3HDM1	98	48.316	ENSSLDG00000004499	r3hdm1	94	48.802	Seriola_lalandi_dorsalis
ENSLACG00000005334	R3HDM1	70	66.883	ENSSARG00000000352	-	64	66.883	Sorex_araneus
ENSLACG00000005334	R3HDM1	100	76.972	ENSSPUG00000004167	R3HDM1	95	76.789	Sphenodon_punctatus
ENSLACG00000005334	R3HDM1	89	62.648	ENSSPAG00000004648	r3hdm1	91	63.357	Stegastes_partitus
ENSLACG00000005334	R3HDM1	100	74.273	ENSSSCG00000015692	R3HDM1	95	73.736	Sus_scrofa
ENSLACG00000005334	R3HDM1	99	71.389	ENSTGUG00000011750	R3HDM1	94	71.230	Taeniopygia_guttata
ENSLACG00000005334	R3HDM1	83	49.231	ENSTRUG00000011654	r3hdm1	93	49.437	Takifugu_rubripes
ENSLACG00000005334	R3HDM1	88	48.069	ENSTNIG00000010362	r3hdm1	96	48.004	Tetraodon_nigroviridis
ENSLACG00000005334	R3HDM1	100	73.850	ENSTTRG00000003935	R3HDM1	95	66.910	Tursiops_truncatus
ENSLACG00000005334	R3HDM1	69	71.615	ENSUAMG00000024806	R3HDM1	84	81.799	Ursus_americanus
ENSLACG00000005334	R3HDM1	99	70.545	ENSUMAG00000005552	R3HDM1	94	85.806	Ursus_maritimus
ENSLACG00000005334	R3HDM1	92	67.988	ENSVPAG00000007333	R3HDM1	88	67.720	Vicugna_pacos
ENSLACG00000005334	R3HDM1	100	74.319	ENSVVUG00000006457	R3HDM1	95	74.763	Vulpes_vulpes
ENSLACG00000005334	R3HDM1	87	66.910	ENSXETG00000019330	r3hdm1	92	66.632	Xenopus_tropicalis
ENSLACG00000005334	R3HDM1	71	48.348	ENSXCOG00000017448	r3hdm1	94	49.024	Xiphophorus_couchianus
ENSLACG00000005334	R3HDM1	87	49.805	ENSXMAG00000007885	r3hdm1	91	62.143	Xiphophorus_maculatus